Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007316

Physical Location & Seq

Genomic Coordinates Forward (+)

54831343 .. 54832271

Gene Structure 929 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0453600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCAGAGAATAATAAGGAAGCAACATCTCCCTATCCGTTGATGCCCTCCGCCCCCAGCTACATGAGGAGCGATCAGGAAGCCGCGGCGTCCGCTCCGCCTAGCGCGGAGGAGCTTCGTCACAAGAAGCGCATGAGGTGCCTTCTCTACGTAGCTATCTTCGCCGTGTTCCAAGTCGTAGTGATAACAGTGTTTGCACTCACCGTGATGAAAATCAAGAGCCCCAAATTCCGGGTCCGGAAGGCGTCGATCACTGACTTTGAAGTCGGCAACGCCACGAGTCCGTCGTTTGATTTGGAAATGGACGTTCATTTTGGGGTGAAGAACACCAACTTTGGTCACTTCGAGTATGAAGATGGAATAGTTGTGTTTTCGCACAGAGGTGTGAGAATTGGACAGGCCAATGTGGAGGAGGCACGTGTCAGGGCAAGATCGACTAGGAAGGTGGACGTTTCATCGGTGGACTTGACTTCGAAAGGTTTGCCGGCAAACTCACGGTTGGGGAGTGATATTAGTACGGGGATTATTCCGATTACGACGTCCTCAAAGTTAGATGGGAAGATTCATCTGATGAAGGTGATCAAGAAGAAGAAGTCTGCTCAGATGAATTGCACCATGGAAGTTGTTCTTGCCACAAAGTCTGTTCAAAATGTCGTATGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

221

Amino Acids

24.35

Weight (kDa)

9.68

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	105 - 205	5.3e-07	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31840 AT2G31840
fragaria_vesca	FvH4_1g00130 FvH4_1g00130 FvH4_1g00130 FvH4_1g00130
malus_domestica	MD15G1142700.v1.1
prunus_persica	Prupe.7G270500_v2.0.a1 Prupe.7G270500_v2.0.a1
pyrus_communis	pycom15g12870
rosa_chinensis	RchiOBHm_Chr2g0084441
rosa_laevigata	RLG00000015617
rosa_multiflora	Rmu_sc0009404.1_g000006 Rmu_sc0025868.1_g000001
rosa_roxburghii	Rroxscaffold_2G00156080
rosa_rugosa	Rorug01G0453600 Rorug01G0453700 Rorug01G0453700 Rorug01G0453800 Rorug01G0453900
rosa_samantha	Rh2AG001900 Rh2BG001600 Rh2CG001800 Rh2DG002000
rosa_wichuraiana	Rw2G000160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AatII	GACGTC	1 cut(s)	542
AccB1I	GGYRCC	1 cut(s)	138
AccBSI	CCGCTC	1 cut(s)	95
AccII	CGCG	2 cut(s)	86, 107
AccIII	TCCGGA	1 cut(s)	237
AciI	CCGC	6 cut(s)	51, 84, 86, 93, 98, 107
AcsI	RAATTY	1 cut(s)	227
AcvI	CACGTG	1 cut(s)	419
AcyI	GRCGYC	3 cut(s)	89, 245, 539
AfaI	GTAC	1 cut(s)	517
AfiI	CCNNNNNNNGG	1 cut(s)	231
AflIII	ACRYGT	1 cut(s)	418
AgsI	TTSAA	2 cut(s)	263, 647
AleI	CACNNNNGTG	1 cut(s)	381
AluBI	AGCT	3 cut(s)	60, 115, 155
AluI	AGCT	3 cut(s)	60, 115, 155
Aor13HI	TCCGGA	1 cut(s)	237
AoxI	GGCC	1 cut(s)	399
ApoI	RAATTY	1 cut(s)	227
ArsI	GACNNNNNNTTYG	4 cut(s)	219, 251, 296, 328
Asp700I	GAANNNNTTC	1 cut(s)	624
AspLEI	GCGC	2 cut(s)	107, 132
AspS9I	GGNCC	1 cut(s)	235
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	3 cut(s)	193, 331, 589
AsuII	TTCGAA	1 cut(s)	473
AvaII	GGWCC	1 cut(s)	235
BanI	GGYRCC	1 cut(s)	138
BanII	GRGCYC	1 cut(s)	224
BauI	CACGAG	1 cut(s)	277
BbrPI	CACGTG	1 cut(s)	419
BccI	CCATC	2 cut(s)	350, 548
BceAI	ACGGC	1 cut(s)	149
BcgI	CGANNNNNNTGC	2 cut(s)	463, 497
BclI	TGATCA	1 cut(s)	579
BcnI	CCSGG	1 cut(s)	233
BfaI	CTAG	2 cut(s)	102, 438
BisI	GCNGC	2 cut(s)	84, 87
BlsI	GCNGC	2 cut(s)	85, 88
Bme1390I	CCNGG	1 cut(s)	233
Bme18I	GGWCC	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	235
BmiI	GGNNCC	2 cut(s)	140, 236
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	1 cut(s)	33
Bpu14I	TTCGAA	1 cut(s)	473
BpuMI	CCSGG	1 cut(s)	233
BsaAI	YACGTR	2 cut(s)	151, 419
BsaBI	GATNNNNATC	1 cut(s)	212
BsaHI	GRCGYC	3 cut(s)	89, 245, 539
BsaJI	CCNNGG	2 cut(s)	84, 615
BsaWI	WCCGGW	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse118I	RCCGGY	1 cut(s)	484
Bse8I	GATNNNNATC	1 cut(s)	212
BseAI	TCCGGA	1 cut(s)	237
BseDI	CCNNGG	2 cut(s)	84, 615
BseJI	GATNNNNATC	1 cut(s)	212
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMII	CTCAG	1 cut(s)	614
BseRI	GAGGAG	3 cut(s)	82, 125, 425
BseYI	CCCAGC	1 cut(s)	56
Bsh1236I	CGCG	2 cut(s)	86, 107
BshFI	GGCC	1 cut(s)	401
BshNI	GGYRCC	1 cut(s)	138
BsiSI	CCGG	3 cut(s)	232, 238, 485
BslI	CCNNNNNNNGG	1 cut(s)	231
BsnI	GGCC	1 cut(s)	401
Bsp119I	TTCGAA	1 cut(s)	473
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp13I	TCCGGA	1 cut(s)	237
Bsp143I	GATC	4 cut(s)	73, 249, 431, 579
Bsp19I	CCATGG	1 cut(s)	615
BspACI	CCGC	6 cut(s)	51, 84, 86, 93, 98, 107
BspANI	GGCC	1 cut(s)	401
BspCNI	CTCAG	1 cut(s)	613
BspEI	TCCGGA	1 cut(s)	237
BspFNI	CGCG	2 cut(s)	86, 107
BspLI	GGNNCC	2 cut(s)	140, 236
BspT104I	TTCGAA	1 cut(s)	473
BspT107I	GGYRCC	1 cut(s)	138
BsrBI	CCGCTC	1 cut(s)	95
BsrFI	RCCGGY	1 cut(s)	484
BssAI	RCCGGY	1 cut(s)	484
BssECI	CCNNGG	2 cut(s)	84, 615
BssMI	GATC	4 cut(s)	73, 249, 431, 579
BssNI	GRCGYC	3 cut(s)	89, 245, 539
BssSI	CACGAG	1 cut(s)	277
BssT1I	CCWWGG	1 cut(s)	615
Bst2BI	CACGAG	1 cut(s)	277
Bst4CI	ACNGT	3 cut(s)	190, 205, 498
BstACI	GRCGYC	3 cut(s)	89, 245, 539
BstAPI	GCANNNNNTGC	1 cut(s)	138
BstBAI	YACGTR	2 cut(s)	151, 419
BstBI	TTCGAA	1 cut(s)	473
BstC8I	GCNNGC	1 cut(s)	486
BstDEI	CTNAG	1 cut(s)	600
BstDSI	CCRYGG	2 cut(s)	84, 615
BstFNI	CGCG	2 cut(s)	86, 107
BstHHI	GCGC	2 cut(s)	107, 132
BstKTI	GATC	4 cut(s)	76, 252, 434, 582
BstMBI	GATC	4 cut(s)	73, 249, 431, 579
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 138, 161
BstSCI	CCNGG	1 cut(s)	231
BstSNI	TACGTA	1 cut(s)	151
BstUI	CGCG	2 cut(s)	86, 107
BsuRI	GGCC	1 cut(s)	401
BtgI	CCRYGG	2 cut(s)	84, 615
BtsIMutI	CAGTG	2 cut(s)	195, 252
Cac8I	GCNNGC	1 cut(s)	486
CfoI	GCGC	2 cut(s)	107, 132
Cfr10I	RCCGGY	1 cut(s)	484
Cfr13I	GGNCC	1 cut(s)	235
Cfr42I	CCGCGG	1 cut(s)	87
CseI	GACGC	2 cut(s)	78, 234
Csp6I	GTAC	1 cut(s)	516
CviAII	CATG	3 cut(s)	64, 133, 616
CviJI	RGCY	6 cut(s)	60, 83, 115, 155, 222, 401
CviKI_1	RGCY	6 cut(s)	60, 83, 115, 155, 222, 401
CviQI	GTAC	1 cut(s)	516
DdeI	CTNAG	1 cut(s)	600
DpnI	GATC	4 cut(s)	75, 251, 433, 581
DpnII	GATC	4 cut(s)	73, 249, 431, 579
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
EciI	GGCGGA	2 cut(s)	40, 87
Eco105I	TACGTA	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	615
Eco24I	GRGCYC	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	235
Eco72I	CACGTG	1 cut(s)	419
EcoT14I	CCWWGG	1 cut(s)	615
EcoT38I	GRGCYC	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	615
FaeI	CATG	3 cut(s)	67, 136, 619
FaiI	YATR	5 cut(s)	65, 134, 351, 617, 658
FalI	AAGNNNNNCTT	2 cut(s)	612, 644
FatI	CATG	3 cut(s)	63, 132, 615
FbaI	TGATCA	1 cut(s)	579
Fnu4HI	GCNGC	2 cut(s)	84, 87
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	2 cut(s)	84, 87
FspBI	CTAG	2 cut(s)	102, 438
GlaI	GCGC	2 cut(s)	106, 131
GluI	GCNGC	2 cut(s)	84, 87
GsaI	CCCAGC	1 cut(s)	60
HaeIII	GGCC	1 cut(s)	401
HapII	CCGG	3 cut(s)	232, 238, 485
HgaI	GACGC	2 cut(s)	78, 234
HhaI	GCGC	2 cut(s)	107, 132
Hin1I	GRCGYC	3 cut(s)	89, 245, 539
Hin1II	CATG	3 cut(s)	67, 136, 619
Hin6I	GCGC	2 cut(s)	105, 130
HinP1I	GCGC	2 cut(s)	105, 130
HinfI	GANTC	2 cut(s)	280, 562
HpaII	CCGG	3 cut(s)	232, 238, 485
HphI	GGTGA	3 cut(s)	193, 331, 589
Hpy166II	GTNNAC	2 cut(s)	448, 463
Hpy188I	TCNGA	3 cut(s)	531, 570, 603
Hpy188III	TCNNGA	4 cut(s)	77, 217, 238, 583
Hpy8I	GTNNAC	2 cut(s)	448, 463
Hpy99I	CGWCG	3 cut(s)	250, 289, 541
HpyAV	CCTTC	4 cut(s)	152, 235, 436, 568
HpyCH4III	ACNGT	3 cut(s)	190, 205, 498
HpyCH4IV	ACGT	5 cut(s)	150, 306, 418, 450, 539
HpyCH4V	TGCA	3 cut(s)	197, 612, 660
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 138, 161
HpyF3I	CTNAG	1 cut(s)	600
HpySE526I	ACGT	5 cut(s)	150, 306, 418, 450, 539
Hsp92I	GRCGYC	3 cut(s)	89, 245, 539
Hsp92II	CATG	3 cut(s)	67, 136, 619
HspAI	GCGC	2 cut(s)	105, 130
Kpn2I	TCCGGA	1 cut(s)	237
KroI	GCCGGC	1 cut(s)	484
KroNI	GCCGGC	1 cut(s)	486
Ksp22I	TGATCA	1 cut(s)	579
KspI	CCGCGG	1 cut(s)	87
Kzo9I	GATC	4 cut(s)	73, 249, 431, 579
LmnI	GCTCC	3 cut(s)	69, 100, 112
LpnPI	CCDG	7 cut(s)	62, 70, 245, 251, 383, 409, 498
LweI	GCATC	1 cut(s)	33
MaeI	CTAG	2 cut(s)	102, 438
MaeII	ACGT	5 cut(s)	150, 306, 418, 450, 539
MaeIII	GTNAC	2 cut(s)	119, 338
MalI	GATC	4 cut(s)	75, 251, 433, 581
MbiI	CCGCTC	1 cut(s)	95
MboI	GATC	4 cut(s)	73, 249, 431, 579
MboII	GAAGA	6 cut(s)	151, 334, 365, 571, 598, 601
MhlI	GDGCHC	1 cut(s)	224
MluCI	AATT	3 cut(s)	227, 390, 607
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	8 cut(s)	58, 60, 103, 129, 374, 403, 406, 553
MroI	TCCGGA	1 cut(s)	237
MroNI	GCCGGC	1 cut(s)	484
MroXI	GAANNNNTTC	1 cut(s)	624
MslI	CAYNNNNRTG	2 cut(s)	206, 381
MspA1I	CMGCKG	1 cut(s)	86
MspI	CCGG	3 cut(s)	232, 238, 485
MspR9I	CCNGG	1 cut(s)	233
MvnI	CGCG	2 cut(s)	86, 107
MwoI	GCNNNNNNNGC	3 cut(s)	92, 138, 161
NaeI	GCCGGC	1 cut(s)	486
NciI	CCSGG	1 cut(s)	233
NcoI	CCATGG	1 cut(s)	615
NdeII	GATC	4 cut(s)	73, 249, 431, 579
NgoMIV	GCCGGC	1 cut(s)	484
NlaIII	CATG	3 cut(s)	67, 136, 619
NlaIV	GGNNCC	2 cut(s)	140, 236
NmuCI	GTSAC	2 cut(s)	119, 338
NspV	TTCGAA	1 cut(s)	473
OliI	CACNNNNGTG	1 cut(s)	381
PcsI	WCGNNNNNNNCGW	1 cut(s)	284
PdiI	GCCGGC	1 cut(s)	486
PdmI	GAANNNNTTC	1 cut(s)	624
PfeI	GAWTC	1 cut(s)	562
PkrI	GCNGC	2 cut(s)	85, 88
PleI	GAGTC	1 cut(s)	288
PmaCI	CACGTG	1 cut(s)	419
PmlI	CACGTG	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	288
Ppu21I	YACGTR	2 cut(s)	151, 419
PspCI	CACGTG	1 cut(s)	419
PspFI	CCCAGC	1 cut(s)	56
PspN4I	GGNNCC	2 cut(s)	140, 236
PspPI	GGNCC	1 cut(s)	235
RsaI	GTAC	1 cut(s)	517
RsaNI	GTAC	1 cut(s)	516
RseI	CAYNNNNRTG	2 cut(s)	206, 381
SacII	CCGCGG	1 cut(s)	87
SatI	GCNGC	2 cut(s)	84, 87
Sau3AI	GATC	4 cut(s)	73, 249, 431, 579
Sau96I	GGNCC	1 cut(s)	235
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	1 cut(s)	233
SduI	GDGCHC	1 cut(s)	224
SfaNI	GCATC	1 cut(s)	33
Sfr303I	CCGCGG	1 cut(s)	87
SfuI	TTCGAA	1 cut(s)	473
SgrBI	CCGCGG	1 cut(s)	87
SinI	GGWCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	2 cut(s)	206, 381
SnaBI	TACGTA	1 cut(s)	151
Sse9I	AATT	3 cut(s)	227, 390, 607
SsiI	CCGC	6 cut(s)	51, 84, 86, 93, 98, 107
SspMI	CTAG	2 cut(s)	102, 438
StyD4I	CCNGG	1 cut(s)	231
StyI	CCWWGG	1 cut(s)	615
TaaI	ACNGT	3 cut(s)	190, 205, 498
TaiI	ACGT	5 cut(s)	153, 309, 421, 453, 542
TaqI	TCGA	4 cut(s)	248, 345, 434, 473
TasI	AATT	3 cut(s)	227, 390, 607
TauI	GCSGC	2 cut(s)	86, 89
TfiI	GAWTC	1 cut(s)	562
TscAI	CASTG	2 cut(s)	195, 259
TseFI	GTSAC	2 cut(s)	119, 338
Tsp45I	GTSAC	2 cut(s)	119, 338
TspDTI	ATGAA	7 cut(s)	224, 299, 366, 444, 554, 587, 620
TspGWI	ACGGA	2 cut(s)	27, 273
TspRI	CASTG	2 cut(s)	195, 259
VpaK11BI	GGWCC	1 cut(s)	235
XapI	RAATTY	1 cut(s)	227
XmnI	GAANNNNTTC	1 cut(s)	624
XspI	CTAG	2 cut(s)	102, 438
ZraI	GACGTC	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.