Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007316

Physical Location & Seq

Genomic Coordinates Forward (+)

10551690 .. 10553760

Gene Structure 2071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1142700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGTGGAGGCCCATTTGCAGTTGCAGCAGGCGCTTTGCGTTCTGCTGGTTGGGGTTTTGGGCTGCTGCGGCTGATGCAGAGGGTTTTGGTTTCTCCTCGTCATCATCGTCCCAAGCTCAGATTTGCTATCTGCCATTTACCGACTGCTGTCAAGTGTTGAAAATGGCTCTGCAAACTACCACCGCACTTCCCTATCTCTTCTCCTCACCAAAACCCAACAACAAATTCTTCATGCTCCTTTCGTTGTCTCCTCATTCCCAGCAAACCCAAGCTAATCACAACAGAGTATGGATGAACACCGCTGCGAGTGTCCCAACACATGTCCATAGCTTCAACTTTACTAGATTGTATGCTTCTAAAACGTATAGCCAACAAGAGGGAGACTCTGATGATGATGATGATGATGATGAACCTTCTTCCGGTAACAAAGATGATCCCTATTTCATGGGTTCTCAAGAGAGACGTGAATGGAGAAACACAATTAGACGAGTTTTGGATACCAACCCCGCTGTTGAGGAGGAGTTAGACCCTAGTGAAAGGACAAAGAAGGTGCAACAACTTCTGGCCAATTATCCTCTTGTTGTAGAAGAGGAGGATCCTGAATGGCCTGAGGATGCGGATGGCCGCGGTTTCAAGTTGGATCAATTCTTTGACAAGATTACCATCAAGAATACGCCAAAGAAGGATGACGATGAGAATGATGACAGCGACAGTGAAGTAGTGTGGCAAGATGATAACTACATTCGTCCCATTAAAGATGTATCAACTGCAGAATGGGAAGAGACTGTTTTCAAGGACATCAGCCCTTTGATCATTCTTGTACACAATCGCTATAGAAGACCAAAAGAGAACGAAAAAATTCGGAATGAACTGGAGAAGGCTATACACATCATATGGAACTGCAGGCTACCTTCACCAAGATGTATTGCAGTTGATGCTGTTACTGAGCATGATTTGGTATCTGCTCTCCAAGTGTCTGCCTTCCCTGAGATCATCTTCACTAAAGCTGGGAAGATCTTATATCGTGAGAAAGAAATTCGAAGTGGAGATGAGTTGTCAAAGGTGATGGCTTTCTTTTACTATGGAGCAGCCAGACCACCTTGTTTGAATGGCATTGGAGATAGGCAGGAAGCAATTCCATATGTTCCCGTCAGCTCCCAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

389

Amino Acids

44.5

Weight (kDa)

4.91

Isoelectric Point (pI)

54.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31840 AT2G31840
fragaria_vesca	FvH4_1g00130 FvH4_1g00130 FvH4_1g00130 FvH4_1g00130
malus_domestica	MD15G1142700.v1.1
prunus_persica	Prupe.7G270500_v2.0.a1 Prupe.7G270500_v2.0.a1
pyrus_communis	pycom15g12870
rosa_chinensis	RchiOBHm_Chr2g0084441
rosa_laevigata	RLG00000015617
rosa_multiflora	Rmu_sc0009404.1_g000006 Rmu_sc0025868.1_g000001
rosa_roxburghii	Rroxscaffold_2G00156080
rosa_rugosa	Rorug01G0453600 Rorug01G0453700 Rorug01G0453700 Rorug01G0453800 Rorug01G0453900
rosa_samantha	Rh2AG001900 Rh2BG001600 Rh2CG001800 Rh2DG002000
rosa_wichuraiana	Rw2G000160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	627
AciI	CCGC	7 cut(s)	68, 183, 300, 507, 617, 625, 627
AclWI	GGATC	4 cut(s)	428, 590, 603, 648
AcoI	YGGCCR	2 cut(s)	564, 622
AcsI	RAATTY	3 cut(s)	224, 858, 1035
AfaI	GTAC	1 cut(s)	822
AfiI	CCNNNNNNNGG	2 cut(s)	376, 419
AflIII	ACRYGT	1 cut(s)	319
AgsI	TTSAA	5 cut(s)	160, 334, 634, 793, 1108
AjiI	CACGTC	1 cut(s)	464
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AluBI	AGCT	5 cut(s)	116, 272, 330, 1007, 1155
AluI	AGCT	5 cut(s)	116, 272, 330, 1007, 1155
Alw26I	GTCTC	4 cut(s)	252, 375, 454, 776
AlwI	GGATC	4 cut(s)	428, 590, 603, 648
AoxI	GGCC	4 cut(s)	8, 564, 605, 622
ApeKI	GCWGC	5 cut(s)	24, 62, 65, 302, 1088
ApoI	RAATTY	3 cut(s)	224, 858, 1035
Asp700I	GAANNNNTTC	2 cut(s)	858, 1134
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	1 cut(s)	9
AsuHPI	GGTGA	3 cut(s)	198, 906, 1075
AsuII	TTCGAA	1 cut(s)	1039
AxyI	CCTNAGG	1 cut(s)	609
BalI	TGGCCA	1 cut(s)	566
BamHI	GGATCC	1 cut(s)	595
BbsI	GAAGAC	1 cut(s)	844
BbvI	GCAGC	5 cut(s)	36, 49, 52, 289, 1100
BccI	CCATC	3 cut(s)	614, 671, 1060
BciVI	GTATCC	1 cut(s)	490
BclI	TGATCA	1 cut(s)	810
BcoDI	GTCTC	4 cut(s)	252, 375, 454, 776
BfaI	CTAG	2 cut(s)	342, 531
BfmI	CTRYAG	3 cut(s)	768, 832, 901
BfoI	RGCGCY	1 cut(s)	34
BfuI	GTATCC	1 cut(s)	490
BglII	AGATCT	1 cut(s)	1014
BisI	GCNGC	7 cut(s)	25, 63, 66, 69, 303, 625, 1089
BlsI	GCNGC	7 cut(s)	26, 64, 67, 70, 304, 626, 1090
BmgBI	CACGTC	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	9
BmiI	GGNNCC	1 cut(s)	597
BmsI	GCATC	3 cut(s)	64, 604, 925
BoxI	GACNNNNGTC	1 cut(s)	147
BpiI	GAAGAC	1 cut(s)	844
BplI	GAGNNNNNCTC	2 cut(s)	368, 400
BpmI	CTGGAG	1 cut(s)	893
Bpu14I	TTCGAA	1 cut(s)	1039
BpuEI	CTTGAG	1 cut(s)	438
BsaBI	GATNNNNATC	1 cut(s)	662
BsaJI	CCNNGG	1 cut(s)	625
BsaWI	WCCGGW	1 cut(s)	419
Bsc4I	CCNNNNNNNGG	2 cut(s)	376, 419
Bse1I	ACTGG	1 cut(s)	876
Bse21I	CCTNAGG	1 cut(s)	609
Bse8I	GATNNNNATC	1 cut(s)	662
BseDI	CCNNGG	1 cut(s)	625
BseGI	GGATG	4 cut(s)	297, 619, 625, 691
BseJI	GATNNNNATC	1 cut(s)	662
BseLI	CCNNNNNNNGG	2 cut(s)	376, 419
BseMII	CTCAG	4 cut(s)	131, 600, 936, 978
BseNI	ACTGG	1 cut(s)	876
BseRI	GAGGAG	6 cut(s)	85, 193, 240, 530, 533, 605
BseXI	GCAGC	5 cut(s)	36, 49, 52, 289, 1100
BseYI	CCCAGC	2 cut(s)	258, 1007
Bsh1236I	CGCG	1 cut(s)	627
BshFI	GGCC	4 cut(s)	10, 566, 607, 624
BsiSI	CCGG	1 cut(s)	420
BslFI	GGGAC	3 cut(s)	94, 296, 732
BslI	CCNNNNNNNGG	2 cut(s)	376, 419
BsmAI	GTCTC	4 cut(s)	252, 375, 454, 776
BsmBI	CGTCTC	1 cut(s)	454
BsmFI	GGGAC	3 cut(s)	94, 296, 732
BsnI	GGCC	4 cut(s)	10, 566, 607, 624
Bsp119I	TTCGAA	1 cut(s)	1039
Bsp1407I	TGTACA	1 cut(s)	820
Bsp143I	GATC	6 cut(s)	433, 595, 640, 810, 990, 1014
BspACI	CCGC	7 cut(s)	68, 183, 300, 507, 617, 625, 627
BspANI	GGCC	4 cut(s)	10, 566, 607, 624
BspCNI	CTCAG	4 cut(s)	130, 601, 937, 979
BspFNI	CGCG	1 cut(s)	627
BspLI	GGNNCC	1 cut(s)	597
BspMAI	CTGCAG	2 cut(s)	772, 905
BspPI	GGATC	4 cut(s)	428, 590, 603, 648
BspT104I	TTCGAA	1 cut(s)	1039
BsrGI	TGTACA	1 cut(s)	820
BsrI	ACTGG	1 cut(s)	876
BssECI	CCNNGG	1 cut(s)	625
BssMI	GATC	6 cut(s)	433, 595, 640, 810, 990, 1014
Bst4CI	ACNGT	2 cut(s)	713, 787
Bst6I	CTCTTC	3 cut(s)	203, 582, 774
BstAPI	GCANNNNNTGC	1 cut(s)	935
BstAUI	TGTACA	1 cut(s)	820
BstBI	TTCGAA	1 cut(s)	1039
BstC8I	GCNNGC	2 cut(s)	29, 905
BstDEI	CTNAG	4 cut(s)	117, 609, 945, 987
BstDSI	CCRYGG	1 cut(s)	625
BstF5I	GGATG	4 cut(s)	297, 619, 625, 691
BstFNI	CGCG	1 cut(s)	627
BstH2I	RGCGCY	1 cut(s)	34
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	6 cut(s)	436, 598, 643, 813, 993, 1017
BstMAI	GTCTC	4 cut(s)	252, 375, 454, 776
BstMBI	GATC	6 cut(s)	433, 595, 640, 810, 990, 1014
BstMWI	GCNNNNNNNGC	5 cut(s)	24, 30, 68, 74, 935
BstNSI	RCATGY	1 cut(s)	323
BstPAI	GACNNNNGTC	1 cut(s)	147
BstSFI	CTRYAG	3 cut(s)	768, 832, 901
BstUI	CGCG	1 cut(s)	627
BstV1I	GCAGC	5 cut(s)	36, 49, 52, 289, 1100
BstV2I	GAAGAC	1 cut(s)	844
BstX2I	RGATCY	2 cut(s)	595, 1014
BstYI	RGATCY	2 cut(s)	595, 1014
Bsu36I	CCTNAGG	1 cut(s)	609
BsuI	GTATCC	1 cut(s)	490
BsuRI	GGCC	4 cut(s)	10, 566, 607, 624
BtgI	CCRYGG	1 cut(s)	625
BtrI	CACGTC	1 cut(s)	464
BtsCI	GGATG	4 cut(s)	297, 619, 625, 691
BtsIMutI	CAGTG	1 cut(s)	718
Cac8I	GCNNGC	2 cut(s)	29, 905
CfoI	GCGC	1 cut(s)	33
Cfr13I	GGNCC	1 cut(s)	9
Cfr42I	CCGCGG	1 cut(s)	628
Csp6I	GTAC	1 cut(s)	821
CspCI	CAANNNNNGTGG	2 cut(s)	1086, 1121
CviAII	CATG	4 cut(s)	232, 320, 445, 950
CviQI	GTAC	1 cut(s)	821
DdeI	CTNAG	4 cut(s)	117, 609, 945, 987
DpnI	GATC	6 cut(s)	435, 597, 642, 812, 992, 1016
DpnII	GATC	6 cut(s)	433, 595, 640, 810, 990, 1014
EaeI	YGGCCR	2 cut(s)	564, 622
Eam1104I	CTCTTC	3 cut(s)	203, 582, 774
EarI	CTCTTC	3 cut(s)	203, 582, 774
Eco81I	CCTNAGG	1 cut(s)	609
Esp3I	CGTCTC	1 cut(s)	454
FaeI	CATG	4 cut(s)	235, 323, 448, 953
FaqI	GGGAC	3 cut(s)	94, 296, 732
FatI	CATG	4 cut(s)	231, 319, 444, 949
FauI	CCCGC	1 cut(s)	514
FauNDI	CATATG	2 cut(s)	893, 1141
FbaI	TGATCA	1 cut(s)	810
Fnu4HI	GCNGC	7 cut(s)	25, 63, 66, 69, 303, 625, 1089
FokI	GGATG	4 cut(s)	304, 626, 632, 698
Fsp4HI	GCNGC	7 cut(s)	25, 63, 66, 69, 303, 625, 1089
FspBI	CTAG	2 cut(s)	342, 531
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	7 cut(s)	25, 63, 66, 69, 303, 625, 1089
GsaI	CCCAGC	2 cut(s)	262, 1011
GsuI	CTGGAG	1 cut(s)	893
HaeII	RGCGCY	1 cut(s)	34
HaeIII	GGCC	4 cut(s)	10, 566, 607, 624
HapII	CCGG	1 cut(s)	420
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	4 cut(s)	235, 323, 448, 953
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HinfI	GANTC	1 cut(s)	383
HpaII	CCGG	1 cut(s)	420
HphI	GGTGA	3 cut(s)	198, 906, 1075
Hpy166II	GTNNAC	1 cut(s)	823
Hpy188I	TCNGA	3 cut(s)	120, 388, 864
Hpy188III	TCNNGA	4 cut(s)	455, 599, 667, 1025
Hpy8I	GTNNAC	1 cut(s)	823
HpyAV	CCTTC	6 cut(s)	423, 541, 676, 871, 921, 991
HpyCH4III	ACNGT	2 cut(s)	713, 787
HpyCH4IV	ACGT	2 cut(s)	362, 463
HpyCH4V	TGCA	8 cut(s)	18, 24, 77, 172, 553, 770, 903, 929
HpyF10VI	GCNNNNNNNGC	5 cut(s)	24, 30, 68, 74, 935
HpyF3I	CTNAG	4 cut(s)	117, 609, 945, 987
HpySE526I	ACGT	2 cut(s)	362, 463
Hsp92II	CATG	4 cut(s)	235, 323, 448, 953
HspAI	GCGC	1 cut(s)	31
Ksp22I	TGATCA	1 cut(s)	810
KspI	CCGCGG	1 cut(s)	628
Kzo9I	GATC	6 cut(s)	433, 595, 640, 810, 990, 1014
LmnI	GCTCC	3 cut(s)	240, 1085, 1160
Lsp1109I	GCAGC	5 cut(s)	36, 49, 52, 289, 1100
LweI	GCATC	3 cut(s)	64, 604, 925
MaeI	CTAG	2 cut(s)	342, 531
MaeII	ACGT	2 cut(s)	362, 463
MaeIII	GTNAC	2 cut(s)	422, 940
MalI	GATC	6 cut(s)	435, 597, 642, 812, 992, 1016
MboI	GATC	6 cut(s)	433, 595, 640, 810, 990, 1014
MboII	GAAGA	8 cut(s)	190, 220, 408, 599, 791, 849, 988, 1024
MflI	RGATCY	2 cut(s)	595, 1014
MlsI	TGGCCA	1 cut(s)	566
MluCI	AATT	7 cut(s)	224, 480, 568, 644, 858, 1035, 1134
MluNI	TGGCCA	1 cut(s)	566
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	618
Mox20I	TGGCCA	1 cut(s)	566
MroXI	GAANNNNTTC	2 cut(s)	858, 1134
MscI	TGGCCA	1 cut(s)	566
MseI	TTAA	1 cut(s)	753
MslI	CAYNNNNRTG	1 cut(s)	919
Msp20I	TGGCCA	1 cut(s)	566
MspA1I	CMGCKG	3 cut(s)	302, 509, 627
MspI	CCGG	1 cut(s)	420
MvnI	CGCG	1 cut(s)	627
MwoI	GCNNNNNNNGC	5 cut(s)	24, 30, 68, 74, 935
NdeI	CATATG	2 cut(s)	893, 1141
NdeII	GATC	6 cut(s)	433, 595, 640, 810, 990, 1014
NlaIII	CATG	4 cut(s)	235, 323, 448, 953
NlaIV	GGNNCC	1 cut(s)	597
NspI	RCATGY	1 cut(s)	323
NspV	TTCGAA	1 cut(s)	1039
PciI	ACATGT	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	1 cut(s)	104
PdmI	GAANNNNTTC	2 cut(s)	858, 1134
PkrI	GCNGC	7 cut(s)	26, 64, 67, 70, 304, 626, 1090
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
PscI	ACATGT	1 cut(s)	319
PshAI	GACNNNNGTC	1 cut(s)	147
PspFI	CCCAGC	2 cut(s)	258, 1007
PspN4I	GGNNCC	1 cut(s)	597
PspPI	GGNCC	1 cut(s)	9
PstI	CTGCAG	2 cut(s)	772, 905
PsuI	RGATCY	2 cut(s)	595, 1014
RsaI	GTAC	1 cut(s)	822
RsaNI	GTAC	1 cut(s)	821
RseI	CAYNNNNRTG	1 cut(s)	919
SacII	CCGCGG	1 cut(s)	628
SaqAI	TTAA	1 cut(s)	753
SatI	GCNGC	7 cut(s)	25, 63, 66, 69, 303, 625, 1089
Sau3AI	GATC	6 cut(s)	433, 595, 640, 810, 990, 1014
Sau96I	GGNCC	1 cut(s)	9
SchI	GAGTC	1 cut(s)	377
SfaNI	GCATC	3 cut(s)	64, 604, 925
SfcI	CTRYAG	3 cut(s)	768, 832, 901
Sfr303I	CCGCGG	1 cut(s)	628
SfuI	TTCGAA	1 cut(s)	1039
SgrBI	CCGCGG	1 cut(s)	628
SmiMI	CAYNNNNRTG	1 cut(s)	919
SmlI	CTYRAG	1 cut(s)	453
SmoI	CTYRAG	1 cut(s)	453
Sse9I	AATT	7 cut(s)	224, 480, 568, 644, 858, 1035, 1134
SsiI	CCGC	7 cut(s)	68, 183, 300, 507, 617, 625, 627
SspMI	CTAG	2 cut(s)	342, 531
TaaI	ACNGT	2 cut(s)	713, 787
TaiI	ACGT	2 cut(s)	365, 466
TaqI	TCGA	1 cut(s)	1039
TasI	AATT	7 cut(s)	224, 480, 568, 644, 858, 1035, 1134
TatI	WGTACW	1 cut(s)	820
TauI	GCSGC	2 cut(s)	71, 627
Tru1I	TTAA	1 cut(s)	753
Tru9I	TTAA	1 cut(s)	753
TscAI	CASTG	1 cut(s)	718
TseI	GCWGC	5 cut(s)	24, 62, 65, 302, 1088
TspDTI	ATGAA	5 cut(s)	220, 308, 423, 433, 882
TspRI	CASTG	1 cut(s)	718
XapI	RAATTY	3 cut(s)	224, 858, 1035
XceI	RCATGY	1 cut(s)	323
XmnI	GAANNNNTTC	2 cut(s)	858, 1134
XspI	CTAG	2 cut(s)	342, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.