Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007316

Physical Location & Seq

Genomic Coordinates Forward (+)

194086 .. 195036

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG001600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGATTCTGATGAGAGACGTGAATGGAGAGAGAAAATTAGACAAGTGTTAGATAAAAACCCGGATGTGGAGGAGCTAGACCCTACTGATAGGACCAGGAAAGTGCAGGACCTTCTGGCCAACTATCCTCTCGTTGTGGATGAGGATGATCCTGAATGGCCTGATGATGCCGACGGCCGTGGTTTCAAGTTGGATCAATTCTTTGACAAGATTACTATCAACAACACCCCAAGGAAGGATGACGACGACGATAGTGACAATGAACTAGTATGGCAAGATGATAATTATATTCGTCCCATCAAAGATATAACAACTGCTGAATGGGAAGAGACCGTTTTCAAGGACATTAGCCCTTTGGTCATTCTTGTACATAATCGCTATAAAAGACCAAAAGAGAATGAAAAAATTCGGACTGAACTGGACAAGGCTGTACAAATTATATGGAATTGCAGGCTACCTTCACCAAGATGCATTGCAATTGATGCTGTTACTGAGCATGACTTGGTTTCTGCTCTCCAAGTGTCTGTCTACCCCGAGATCATCTTCACTAAGGCTGGGAAGATCTTGTATCATGAGAAAGGTAATTTCAATTTTGGAACAAATGCGCTTCATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

24.05

Weight (kDa)

4.65

Isoelectric Point (pI)

24.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31840 AT2G31840
fragaria_vesca	FvH4_1g00130 FvH4_1g00130 FvH4_1g00130 FvH4_1g00130
malus_domestica	MD15G1142700.v1.1
prunus_persica	Prupe.7G270500_v2.0.a1 Prupe.7G270500_v2.0.a1
pyrus_communis	pycom15g12870
rosa_chinensis	RchiOBHm_Chr2g0084441
rosa_laevigata	RLG00000015617
rosa_multiflora	Rmu_sc0009404.1_g000006 Rmu_sc0025868.1_g000001
rosa_roxburghii	Rroxscaffold_2G00156080
rosa_rugosa	Rorug01G0453600 Rorug01G0453700 Rorug01G0453700 Rorug01G0453800 Rorug01G0453900
rosa_samantha	Rh2AG001900 Rh2BG001600 Rh2CG001800 Rh2DG002000
rosa_wichuraiana	Rw2G000160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	528
AclWI	GGATC	2 cut(s)	143, 201
AcoI	YGGCCR	2 cut(s)	117, 175
AcsI	RAATTY	1 cut(s)	405
AfaI	GTAC	2 cut(s)	369, 432
AfiI	CCNNNNNNNGG	2 cut(s)	67, 235
AgsI	TTSAA	3 cut(s)	187, 340, 589
AhlI	ACTAGT	1 cut(s)	265
AjiI	CACGTC	1 cut(s)	20
AjnI	CCWGG	1 cut(s)	95
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
Alw26I	GTCTC	2 cut(s)	10, 323
AlwI	GGATC	2 cut(s)	143, 201
Ama87I	CYCGRG	1 cut(s)	533
AoxI	GGCC	3 cut(s)	117, 158, 175
ApoI	RAATTY	1 cut(s)	405
Asp700I	GAANNNNTTC	1 cut(s)	405
AspLEI	GCGC	1 cut(s)	607
AspS9I	GGNCC	2 cut(s)	93, 109
AsuC2I	CCSGG	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	453
AvaI	CYCGRG	1 cut(s)	533
AvaII	GGWCC	2 cut(s)	93, 109
BalI	TGGCCA	1 cut(s)	119
BccI	CCATC	1 cut(s)	305
BceAI	ACGGC	2 cut(s)	162, 190
BciT130I	CCWGG	1 cut(s)	97
BcnI	CCSGG	1 cut(s)	62
BcoDI	GTCTC	2 cut(s)	10, 323
BcuI	ACTAGT	1 cut(s)	265
BfaI	CTAG	2 cut(s)	77, 266
BglII	AGATCT	1 cut(s)	561
Bme1390I	CCNGG	2 cut(s)	62, 97
Bme18I	GGWCC	2 cut(s)	93, 109
BmeT110I	CYCGRG	1 cut(s)	533
BmgBI	CACGTC	1 cut(s)	20
BmgT120I	GGNCC	2 cut(s)	93, 109
BmrFI	CCNGG	2 cut(s)	62, 97
BmsI	GCATC	3 cut(s)	157, 458, 472
BpuMI	CCSGG	1 cut(s)	62
BsaBI	GATNNNNATC	1 cut(s)	215
BsaI	GGTCTC	1 cut(s)	323
BsaJI	CCNNGG	2 cut(s)	178, 230
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 235
Bse1I	ACTGG	1 cut(s)	423
Bse3DI	GCAATG	1 cut(s)	471
Bse8I	GATNNNNATC	1 cut(s)	215
BseBI	CCWGG	1 cut(s)	97
BseDI	CCNNGG	2 cut(s)	178, 230
BseGI	GGATG	4 cut(s)	70, 145, 151, 244
BseJI	GATNNNNATC	1 cut(s)	215
BseLI	CCNNNNNNNGG	2 cut(s)	67, 235
BseMI	GCAATG	1 cut(s)	471
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	1 cut(s)	423
BseRI	GAGGAG	1 cut(s)	86
BseX3I	CGGCCG	1 cut(s)	175
BseYI	CCCAGC	1 cut(s)	554
BsgI	GTGCAG	1 cut(s)	125
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	3 cut(s)	119, 160, 177
BsiEI	CGRYCG	1 cut(s)	178
BsiHKCI	CYCGRG	1 cut(s)	533
BsiSI	CCGG	1 cut(s)	62
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	2 cut(s)	67, 235
BsmAI	GTCTC	2 cut(s)	10, 323
BsmBI	CGTCTC	1 cut(s)	10
BsmFI	GGGAC	1 cut(s)	279
BsnI	GGCC	3 cut(s)	119, 160, 177
Bso31I	GGTCTC	1 cut(s)	323
BsoBI	CYCGRG	1 cut(s)	533
Bsp1407I	TGTACA	2 cut(s)	367, 430
Bsp143I	GATC	4 cut(s)	148, 193, 537, 561
BspANI	GGCC	3 cut(s)	119, 160, 177
BspCNI	CTCAG	1 cut(s)	484
BspHI	TCATGA	1 cut(s)	571
BspPI	GGATC	2 cut(s)	143, 201
BspTNI	GGTCTC	1 cut(s)	323
BsrDI	GCAATG	1 cut(s)	471
BsrGI	TGTACA	2 cut(s)	367, 430
BsrI	ACTGG	1 cut(s)	423
BssECI	CCNNGG	2 cut(s)	178, 230
BssMI	GATC	4 cut(s)	148, 193, 537, 561
BssT1I	CCWWGG	1 cut(s)	230
Bst2UI	CCWGG	1 cut(s)	97
Bst4CI	ACNGT	1 cut(s)	334
Bst6I	CTCTTC	1 cut(s)	321
BstAPI	GCANNNNNTGC	1 cut(s)	482
BstAUI	TGTACA	2 cut(s)	367, 430
BstC8I	GCNNGC	1 cut(s)	452
BstDEI	CTNAG	2 cut(s)	492, 549
BstDSI	CCRYGG	1 cut(s)	178
BstF5I	GGATG	4 cut(s)	70, 145, 151, 244
BstHHI	GCGC	1 cut(s)	607
BstKTI	GATC	4 cut(s)	151, 196, 540, 564
BstMAI	GTCTC	2 cut(s)	10, 323
BstMBI	GATC	4 cut(s)	148, 193, 537, 561
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstNI	CCWGG	1 cut(s)	97
BstSCI	CCNGG	2 cut(s)	60, 95
BstX2I	RGATCY	1 cut(s)	561
BstYI	RGATCY	1 cut(s)	561
BstZI	CGGCCG	1 cut(s)	175
BsuRI	GGCC	3 cut(s)	119, 160, 177
BtgI	CCRYGG	1 cut(s)	178
BtrI	CACGTC	1 cut(s)	20
BtsCI	GGATG	4 cut(s)	70, 145, 151, 244
Cac8I	GCNNGC	1 cut(s)	452
CciI	TCATGA	1 cut(s)	571
CfoI	GCGC	1 cut(s)	607
Cfr13I	GGNCC	2 cut(s)	93, 109
Csp6I	GTAC	2 cut(s)	368, 431
CviAII	CATG	2 cut(s)	497, 572
CviJI	RGCY	8 cut(s)	76, 119, 160, 177, 351, 428, 454, 554
CviKI_1	RGCY	8 cut(s)	76, 119, 160, 177, 351, 428, 454, 554
CviQI	GTAC	2 cut(s)	368, 431
DdeI	CTNAG	2 cut(s)	492, 549
DpnI	GATC	4 cut(s)	150, 195, 539, 563
DpnII	GATC	4 cut(s)	148, 193, 537, 561
EaeI	YGGCCR	2 cut(s)	117, 175
EagI	CGGCCG	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
EclXI	CGGCCG	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	230
Eco31I	GGTCTC	1 cut(s)	323
Eco47I	GGWCC	2 cut(s)	93, 109
Eco52I	CGGCCG	1 cut(s)	175
Eco88I	CYCGRG	1 cut(s)	533
EcoO109I	RGGNCCY	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	230
EcoT22I	ATGCAT	1 cut(s)	473
ErhI	CCWWGG	1 cut(s)	230
Esp3I	CGTCTC	1 cut(s)	10
FaeI	CATG	2 cut(s)	500, 575
FaiI	YATR	9 cut(s)	271, 288, 308, 372, 381, 440, 442, 498, 573
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	2 cut(s)	496, 571
FblI	GTMKAC	1 cut(s)	528
FokI	GGATG	4 cut(s)	77, 152, 158, 251
FspBI	CTAG	2 cut(s)	77, 266
GlaI	GCGC	1 cut(s)	606
GsaI	CCCAGC	1 cut(s)	558
HaeIII	GGCC	3 cut(s)	119, 160, 177
HapII	CCGG	1 cut(s)	62
HhaI	GCGC	1 cut(s)	607
Hin1II	CATG	2 cut(s)	500, 575
Hin6I	GCGC	1 cut(s)	605
HinP1I	GCGC	1 cut(s)	605
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	1 cut(s)	453
Hpy166II	GTNNAC	1 cut(s)	529
Hpy188I	TCNGA	2 cut(s)	10, 411
Hpy188III	TCNNGA	3 cut(s)	152, 572, 615
Hpy8I	GTNNAC	1 cut(s)	529
Hpy99I	CGWCG	3 cut(s)	176, 248, 251
HpyAV	CCTTC	3 cut(s)	122, 229, 468
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	4 cut(s)	106, 450, 471, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	2 cut(s)	492, 549
HpySE526I	ACGT	1 cut(s)	19
Hsp92II	CATG	2 cut(s)	500, 575
HspAI	GCGC	1 cut(s)	605
Kzo9I	GATC	4 cut(s)	148, 193, 537, 561
LmnI	GCTCC	1 cut(s)	73
LweI	GCATC	3 cut(s)	157, 458, 472
MaeI	CTAG	2 cut(s)	77, 266
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	2 cut(s)	254, 487
MalI	GATC	4 cut(s)	150, 195, 539, 563
MboI	GATC	4 cut(s)	148, 193, 537, 561
MboII	GAAGA	3 cut(s)	338, 535, 571
MfeI	CAATTG	1 cut(s)	477
MflI	RGATCY	1 cut(s)	561
MlsI	TGGCCA	1 cut(s)	119
MluCI	AATT	9 cut(s)	36, 197, 283, 405, 435, 445, 477, 583, 589
MluNI	TGGCCA	1 cut(s)	119
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	3 cut(s)	64, 136, 138
Mox20I	TGGCCA	1 cut(s)	119
Mph1103I	ATGCAT	1 cut(s)	473
MroXI	GAANNNNTTC	1 cut(s)	405
MscI	TGGCCA	1 cut(s)	119
MslI	CAYNNNNRTG	1 cut(s)	466
Msp20I	TGGCCA	1 cut(s)	119
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	2 cut(s)	62, 97
MunI	CAATTG	1 cut(s)	477
MvaI	CCWGG	1 cut(s)	97
MwoI	GCNNNNNNNGC	1 cut(s)	482
NciI	CCSGG	1 cut(s)	62
NdeII	GATC	4 cut(s)	148, 193, 537, 561
NlaIII	CATG	2 cut(s)	500, 575
NmuCI	GTSAC	1 cut(s)	254
NsiI	ATGCAT	1 cut(s)	473
PagI	TCATGA	1 cut(s)	571
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	5
PpuMI	RGGWCCY	1 cut(s)	109
Psp5II	RGGWCCY	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	95
PspFI	CCCAGC	1 cut(s)	554
PspGI	CCWGG	1 cut(s)	95
PspPI	GGNCC	2 cut(s)	93, 109
PspPPI	RGGWCCY	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	561
RsaI	GTAC	2 cut(s)	369, 432
RsaNI	GTAC	2 cut(s)	368, 431
RseI	CAYNNNNRTG	1 cut(s)	466
Sau3AI	GATC	4 cut(s)	148, 193, 537, 561
Sau96I	GGNCC	2 cut(s)	93, 109
ScrFI	CCNGG	2 cut(s)	62, 97
SetI	ASST	5 cut(s)	22, 78, 114, 460, 583
SfaNI	GCATC	3 cut(s)	157, 458, 472
SinI	GGWCC	2 cut(s)	93, 109
SmiMI	CAYNNNNRTG	1 cut(s)	466
SpeI	ACTAGT	1 cut(s)	265
Sse9I	AATT	9 cut(s)	36, 197, 283, 405, 435, 445, 477, 583, 589
SspMI	CTAG	2 cut(s)	77, 266
StyD4I	CCNGG	2 cut(s)	60, 95
StyI	CCWWGG	1 cut(s)	230
TaaI	ACNGT	1 cut(s)	334
TaiI	ACGT	1 cut(s)	22
TasI	AATT	9 cut(s)	36, 197, 283, 405, 435, 445, 477, 583, 589
TatI	WGTACW	2 cut(s)	367, 430
TfiI	GAWTC	1 cut(s)	5
TseFI	GTSAC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	3 cut(s)	276, 414, 599
VpaK11BI	GGWCC	2 cut(s)	93, 109
XapI	RAATTY	1 cut(s)	405
XmiI	GTMKAC	1 cut(s)	528
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	2 cut(s)	77, 266
Zsp2I	ATGCAT	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.