Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007316

Physical Location & Seq

Genomic Coordinates Reverse (-)

13537755 .. 13539804

Gene Structure 2050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G31840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGATTCTTCCATTTTCGACACAGTTCACTTGCCCTGTTCAGGATAATGGATTCAGCCCTTCTTCACTACTTTCCCATTGCAAAAGAGATCGTTTTGAAGTTACTTCGTTGAGATATGACTCTTTTGGTTCGGTGAAGACTGCCTCCTCCTCGAAGTGGAATGTTATGAGGTCGAGGAGAAATGTGAAAGCTTTTGGGTTAGTTGATAAACTTGGGAAGAAGGTATGGAGAAAGAAAGAAGAAGATAGTGACAGTGAAGATGAGGAAGATGAAGTGAAAGAAGAGACCTTTGGCGGGAAAGAAGCGAGTCTCGATGATCCAGTAGAGAGACGGGAATGGAGGAAGACGATAAGAGAGGTGATTGATAAGCATCCTGATATTGAAGAAGACGAAGAGATTGATATGGTTGAGAAGAGGAGGAAGATGCAGAAGCTTCTTGCTGATTACCCACTTGTTGTGAATGAAGAGGATCCTAATTGGCCTGAAGATGCTGATGGTTGGGGGTTTAGTTTCAATCAGTTTTTTAATAAGATAACGATTAAGAATGAAAAGAAGGAAGAAGAGGATGATGATGAAGATAGTGAAGGAGATGATAGTGAGAAGGAGATTGTTTGGCAAGATGATAACTATATACGCCCGATTAAAGATCTCACAACGGCAGAATGGGAAGAGGCGGTGTTCAAAGATATTAGTCCTCTCATGGTCCTTGTTCACAACCGCTACAAGAGGCCTAAGGAAAACGAAAAGTTCAGGGAAGAACTAGAGAAGGCGATTCAAGTTATATGGAACTGTGGACTTCCTTCACCAAGATGTGTTGCTGTTGATGCTGTGGTTGAGACAGATTTGGTCTCTGCTCTGAAAGTATCTGTCTTCCCAGAGATCATCTTCACTAAAGCCGGGAAGATACTATACCGCGAGAAAGGCATTAGAACAGCAGATGAGCTTTCAAAAATCATGGCTTTCTTCTATTATGGAGCTGCAAAACCACCTTGTTTGAATGGTGTCGTGAATTCGCAAGAACAGATTCCTTTAGTCGATGTAAGTGTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

350

Amino Acids

40.54

Weight (kDa)

4.79

Isoelectric Point (pI)

51.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31840 AT2G31840
fragaria_vesca	FvH4_1g00130 FvH4_1g00130 FvH4_1g00130 FvH4_1g00130
malus_domestica	MD15G1142700.v1.1
prunus_persica	Prupe.7G270500_v2.0.a1 Prupe.7G270500_v2.0.a1
pyrus_communis	pycom15g12870
rosa_chinensis	RchiOBHm_Chr2g0084441
rosa_laevigata	RLG00000015617
rosa_multiflora	Rmu_sc0009404.1_g000006 Rmu_sc0025868.1_g000001
rosa_roxburghii	Rroxscaffold_2G00156080
rosa_rugosa	Rorug01G0453600 Rorug01G0453700 Rorug01G0453700 Rorug01G0453800 Rorug01G0453900
rosa_samantha	Rh2AG001900 Rh2BG001600 Rh2CG001800 Rh2DG002000
rosa_wichuraiana	Rw2G000160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	915
AciI	CCGC	4 cut(s)	294, 674, 718, 913
AclWI	GGATC	3 cut(s)	311, 464, 477
AcsI	RAATTY	1 cut(s)	1009
AcuI	CTGAAG	1 cut(s)	504
AfiI	CCNNNNNNNGG	3 cut(s)	40, 156, 294
AgsI	TTSAA	7 cut(s)	98, 383, 514, 682, 776, 948, 997
AjuI	GAANNNNNNNTTGG	2 cut(s)	273, 305
AluBI	AGCT	4 cut(s)	191, 433, 943, 977
AluI	AGCT	4 cut(s)	191, 433, 943, 977
Alw26I	GTCTC	5 cut(s)	278, 314, 322, 830, 853
AlwI	GGATC	3 cut(s)	311, 464, 477
AoxI	GGCC	2 cut(s)	479, 728
ApeKI	GCWGC	1 cut(s)	977
ApoI	RAATTY	1 cut(s)	1009
Asp700I	GAANNNNTTC	1 cut(s)	1023
AspS9I	GGNCC	1 cut(s)	703
AsuC2I	CCSGG	1 cut(s)	898
AsuHPI	GGTGA	3 cut(s)	145, 370, 795
AvaII	GGWCC	1 cut(s)	703
AxyI	CCTNAGG	1 cut(s)	732
BamHI	GGATCC	1 cut(s)	469
BarI	GAAGNNNNNNTAC	2 cut(s)	893, 925
BbsI	GAAGAC	4 cut(s)	143, 350, 393, 862
BbvI	GCAGC	1 cut(s)	964
BccI	CCATC	1 cut(s)	488
BceAI	ACGGC	1 cut(s)	672
BcnI	CCSGG	1 cut(s)	898
BcoDI	GTCTC	5 cut(s)	278, 314, 322, 830, 853
BfaI	CTAG	1 cut(s)	761
BglII	AGATCT	1 cut(s)	646
BisI	GCNGC	1 cut(s)	978
BlsI	GCNGC	1 cut(s)	979
Bme1390I	CCNGG	1 cut(s)	898
Bme18I	GGWCC	1 cut(s)	703
BmgT120I	GGNCC	1 cut(s)	703
BmiI	GGNNCC	1 cut(s)	471
BmrFI	CCNGG	1 cut(s)	898
BmsI	GCATC	4 cut(s)	379, 414, 478, 814
BpiI	GAAGAC	4 cut(s)	143, 350, 393, 862
BpuMI	CCSGG	1 cut(s)	898
BsaBI	GATNNNNATC	1 cut(s)	369
BsaI	GGTCTC	2 cut(s)	278, 853
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 156, 294
Bse1I	ACTGG	1 cut(s)	320
Bse21I	CCTNAGG	1 cut(s)	732
Bse3DI	GCAATG	1 cut(s)	76
Bse8I	GATNNNNATC	1 cut(s)	369
BseGI	GGATG	2 cut(s)	370, 571
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	3 cut(s)	40, 156, 294
BseMI	GCAATG	1 cut(s)	76
BseNI	ACTGG	1 cut(s)	320
BseRI	GAGGAG	4 cut(s)	136, 139, 190, 430
BseXI	GCAGC	1 cut(s)	964
Bsh1236I	CGCG	1 cut(s)	915
BshFI	GGCC	2 cut(s)	481, 730
BsiSI	CCGG	1 cut(s)	897
BslI	CCNNNNNNNGG	3 cut(s)	40, 156, 294
BsmAI	GTCTC	5 cut(s)	278, 314, 322, 830, 853
BsmBI	CGTCTC	1 cut(s)	322
BsnI	GGCC	2 cut(s)	481, 730
Bso31I	GGTCTC	2 cut(s)	278, 853
Bsp143I	GATC	5 cut(s)	88, 316, 469, 646, 879
BspACI	CCGC	4 cut(s)	294, 674, 718, 913
BspANI	GGCC	2 cut(s)	481, 730
BspFNI	CGCG	1 cut(s)	915
BspLI	GGNNCC	1 cut(s)	471
BspPI	GGATC	3 cut(s)	311, 464, 477
BspTNI	GGTCTC	2 cut(s)	278, 853
BsrDI	GCAATG	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	320
BssMI	GATC	5 cut(s)	88, 316, 469, 646, 879
Bst4CI	ACNGT	3 cut(s)	24, 254, 791
Bst6I	CTCTTC	6 cut(s)	276, 387, 407, 459, 555, 663
BstDEI	CTNAG	1 cut(s)	732
BstF5I	GGATG	2 cut(s)	370, 571
BstFNI	CGCG	1 cut(s)	915
BstKTI	GATC	5 cut(s)	91, 319, 472, 649, 882
BstMAI	GTCTC	5 cut(s)	278, 314, 322, 830, 853
BstMBI	GATC	5 cut(s)	88, 316, 469, 646, 879
BstMWI	GCNNNNNNNGC	2 cut(s)	824, 921
BstSCI	CCNGG	1 cut(s)	896
BstUI	CGCG	1 cut(s)	915
BstV1I	GCAGC	1 cut(s)	964
BstV2I	GAAGAC	4 cut(s)	143, 350, 393, 862
BstX2I	RGATCY	2 cut(s)	469, 646
BstYI	RGATCY	2 cut(s)	469, 646
Bsu36I	CCTNAGG	1 cut(s)	732
BsuRI	GGCC	2 cut(s)	481, 730
BtsCI	GGATG	2 cut(s)	370, 571
BtsIMutI	CAGTG	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	703
CspCI	CAANNNNNGTGG	2 cut(s)	975, 1010
CviAII	CATG	2 cut(s)	700, 955
CviJI	RGCY	9 cut(s)	57, 191, 433, 481, 730, 896, 943, 959, 977
CviKI_1	RGCY	9 cut(s)	57, 191, 433, 481, 730, 896, 943, 959, 977
DdeI	CTNAG	1 cut(s)	732
DpnI	GATC	5 cut(s)	90, 318, 471, 648, 881
DpnII	GATC	5 cut(s)	88, 316, 469, 646, 879
Eam1104I	CTCTTC	6 cut(s)	276, 387, 407, 459, 555, 663
EarI	CTCTTC	6 cut(s)	276, 387, 407, 459, 555, 663
Eco147I	AGGCCT	1 cut(s)	730
Eco31I	GGTCTC	2 cut(s)	278, 853
Eco47I	GGWCC	1 cut(s)	703
Eco57I	CTGAAG	1 cut(s)	504
Eco81I	CCTNAGG	1 cut(s)	732
EcoRI	GAATTC	1 cut(s)	1009
Esp3I	CGTCTC	1 cut(s)	322
FaeI	CATG	2 cut(s)	703, 958
FatI	CATG	2 cut(s)	699, 954
FauI	CCCGC	1 cut(s)	287
Fnu4HI	GCNGC	1 cut(s)	978
FokI	GGATG	2 cut(s)	357, 578
Fsp4HI	GCNGC	1 cut(s)	978
FspBI	CTAG	1 cut(s)	761
GluI	GCNGC	1 cut(s)	978
HaeIII	GGCC	2 cut(s)	481, 730
HapII	CCGG	1 cut(s)	897
Hin1II	CATG	2 cut(s)	703, 958
HindIII	AAGCTT	2 cut(s)	189, 431
HinfI	GANTC	6 cut(s)	4, 51, 119, 307, 772, 1024
HpaII	CCGG	1 cut(s)	897
HphI	GGTGA	3 cut(s)	145, 370, 795
Hpy166II	GTNNAC	3 cut(s)	27, 712, 794
Hpy188I	TCNGA	1 cut(s)	858
Hpy188III	TCNNGA	4 cut(s)	41, 311, 374, 1006
Hpy8I	GTNNAC	3 cut(s)	27, 712, 794
HpyAV	CCTTC	7 cut(s)	69, 214, 547, 578, 595, 760, 810
HpyCH4III	ACNGT	3 cut(s)	24, 254, 791
HpyCH4V	TGCA	3 cut(s)	81, 427, 980
HpyF10VI	GCNNNNNNNGC	2 cut(s)	824, 921
HpyF3I	CTNAG	1 cut(s)	732
Hsp92II	CATG	2 cut(s)	703, 958
Kzo9I	GATC	5 cut(s)	88, 316, 469, 646, 879
LmnI	GCTCC	1 cut(s)	974
LpnPI	CCDG	8 cut(s)	26, 48, 333, 387, 495, 736, 888, 910
Lsp1109I	GCAGC	1 cut(s)	964
LweI	GCATC	4 cut(s)	379, 414, 478, 814
MaeI	CTAG	1 cut(s)	761
MaeIII	GTNAC	2 cut(s)	100, 248
MalI	GATC	5 cut(s)	90, 318, 471, 648, 881
MboI	GATC	5 cut(s)	88, 316, 469, 646, 879
MflI	RGATCY	2 cut(s)	469, 646
MluCI	AATT	3 cut(s)	475, 1009, 1048
MlyI	GAGTC	2 cut(s)	113, 316
MroXI	GAANNNNTTC	1 cut(s)	1023
MseI	TTAA	4 cut(s)	525, 540, 642, 1051
MslI	CAYNNNNRTG	1 cut(s)	808
MspI	CCGG	1 cut(s)	897
MspR9I	CCNGG	1 cut(s)	898
MvnI	CGCG	1 cut(s)	915
MwoI	GCNNNNNNNGC	2 cut(s)	824, 921
NciI	CCSGG	1 cut(s)	898
NdeII	GATC	5 cut(s)	88, 316, 469, 646, 879
NlaIII	CATG	2 cut(s)	703, 958
NlaIV	GGNNCC	1 cut(s)	471
NmuCI	GTSAC	1 cut(s)	248
PceI	AGGCCT	1 cut(s)	730
PdmI	GAANNNNTTC	1 cut(s)	1023
PfeI	GAWTC	4 cut(s)	4, 51, 772, 1024
PkrI	GCNGC	1 cut(s)	979
PleI	GAGTC	2 cut(s)	113, 315
PpsI	GAGTC	2 cut(s)	113, 315
PspN4I	GGNNCC	1 cut(s)	471
PspPI	GGNCC	1 cut(s)	703
PsuI	RGATCY	2 cut(s)	469, 646
RseI	CAYNNNNRTG	1 cut(s)	808
SaqAI	TTAA	4 cut(s)	525, 540, 642, 1051
SatI	GCNGC	1 cut(s)	978
Sau3AI	GATC	5 cut(s)	88, 316, 469, 646, 879
Sau96I	GGNCC	1 cut(s)	703
SchI	GAGTC	2 cut(s)	113, 316
ScrFI	CCNGG	1 cut(s)	898
SetI	ASST	9 cut(s)	173, 193, 225, 290, 360, 435, 945, 979, 991
SfaNI	GCATC	4 cut(s)	379, 414, 478, 814
SinI	GGWCC	1 cut(s)	703
SmiMI	CAYNNNNRTG	1 cut(s)	808
Sse9I	AATT	3 cut(s)	475, 1009, 1048
SseBI	AGGCCT	1 cut(s)	730
SsiI	CCGC	4 cut(s)	294, 674, 718, 913
SspMI	CTAG	1 cut(s)	761
StuI	AGGCCT	1 cut(s)	730
StyD4I	CCNGG	1 cut(s)	896
TaaI	ACNGT	3 cut(s)	24, 254, 791
TaqI	TCGA	5 cut(s)	17, 152, 173, 312, 1035
TasI	AATT	3 cut(s)	475, 1009, 1048
TfiI	GAWTC	4 cut(s)	4, 51, 772, 1024
Tru1I	TTAA	4 cut(s)	525, 540, 642, 1051
Tru9I	TTAA	4 cut(s)	525, 540, 642, 1051
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	1 cut(s)	977
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	4 cut(s)	285, 477, 561, 588
TspRI	CASTG	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	703
XapI	RAATTY	1 cut(s)	1009
XmnI	GAANNNNTTC	1 cut(s)	1023
XspI	CTAG	1 cut(s)	761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.