Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007316

Physical Location & Seq

Genomic Coordinates Reverse (-)

92555115 .. 92560441

Gene Structure 5327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00156080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGAGTGCCATCTCCATGTGGAGCTTCATCGGATAGAAGAGACAGAGACAAACAACTTTGATGAAGGAAGGATTTTGATCGAGGTCCCCATCAAGATGTTTCGGGGCATGCAAATAGGCCGATCTGCACAGAACGAGAGTGCCGCCGTGCCGCTGCGGGGGCAGCGGGCGTGCGACGATGCTACAGGGGCAGTAGGCGGCACACGGGTGCTCAAAGGGCTGCAGGGGCAGTGCAAGATATATAGTAGTGAAAAAGTGGCTGGGGGTTCCTTCTGCCAGGTGAAGCTAATACGAGTTCAGTTGAGCGCAGTCGGCACAAAAAGAAGAGAGGTTACTAGATTGTATGCCTCTAGTTCAGGCGACAAAAGCGACCCCTATTTGATGGATTCTGATGAGAGACTTGAATGGAGAGAGAAAATTAGACAAGTGTTGGATAAAAACCCGGATGTGGAGGAGGAGGAGCTAGACCCTACTGATAGGACGAGGAAAGTGCAGGACCTTCTGGTCAACTATCCCCTCGTTGTGGATGAGGATGATCCTGAATGGCCTGATGATGCCGACGGCCGCGGTTTCAAGTTGGATCAATTCTTTGACAAGATTACTATCAACAACACTCCAAGGAAGGACGACGATGATAGTGACAATGAACTAGTATGGCAGGATGATAATTATATTCGTCCCATCAAAGATATAACCACTGCTGAATGGGAAGAGACCGTTTTCAAGGACATTAGCCCTTTGGTCATTCTTGTACATAATCGCTATAAAAGACCAAAAGAGAATGAAAAAATTCGGACTGAACTGGAGAAGGCTGTACAAATTATATGGAATTGCAGGCTACCTTCACCAAGATGTATTGCAATTGATGCTGTTACTGAGCATGACTTGGTTTCTGCTCTCCAAGTGTCTGTCTACCCCGAGATCATCTTCACCAAGGCTGGGAAGATCTTGTATCGTGAGAAAGCAATACGAAGCGGAGATGAGCTCTCAAAAGTAATGGCTTTCTTTTACTATGGAGCAGCCAAACCAGCTTGTTTGAATGGAATTGGTGATAGGCAGGAAGAAATTCCATCCATTCCTATCAATGCCCAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

365

Amino Acids

41.61

Weight (kDa)

5.01

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31840 AT2G31840
fragaria_vesca	FvH4_1g00130 FvH4_1g00130 FvH4_1g00130 FvH4_1g00130
malus_domestica	MD15G1142700.v1.1
prunus_persica	Prupe.7G270500_v2.0.a1 Prupe.7G270500_v2.0.a1
pyrus_communis	pycom15g12870
rosa_chinensis	RchiOBHm_Chr2g0084441
rosa_laevigata	RLG00000015617
rosa_multiflora	Rmu_sc0009404.1_g000006 Rmu_sc0025868.1_g000001
rosa_roxburghii	Rroxscaffold_2G00156080
rosa_rugosa	Rorug01G0453600 Rorug01G0453700 Rorug01G0453700 Rorug01G0453800 Rorug01G0453900
rosa_samantha	Rh2AG001900 Rh2BG001600 Rh2CG001800 Rh2DG002000
rosa_wichuraiana	Rw2G000160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	503
AccI	GTMKAC	1 cut(s)	912
AccII	CGCG	1 cut(s)	567
AciI	CCGC	8 cut(s)	144, 152, 157, 166, 198, 565, 567, 975
AclWI	GGATC	2 cut(s)	530, 588
AcoI	YGGCCR	1 cut(s)	562
AcsI	RAATTY	2 cut(s)	789, 1065
AfaI	GTAC	2 cut(s)	753, 816
AfiI	CCNNNNNNNGG	4 cut(s)	158, 448, 523, 939
AgsI	TTSAA	4 cut(s)	404, 574, 724, 1039
AhlI	ACTAGT	1 cut(s)	649
AjnI	CCWGG	1 cut(s)	276
AleI	CACNNNNGTG	1 cut(s)	206
AluBI	AGCT	5 cut(s)	25, 286, 463, 985, 1031
AluI	AGCT	5 cut(s)	25, 286, 463, 985, 1031
Alw21I	GWGCWC	2 cut(s)	213, 987
Alw26I	GTCTC	4 cut(s)	35, 41, 391, 707
AlwI	GGATC	2 cut(s)	530, 588
Ama87I	CYCGRG	1 cut(s)	917
AoxI	GGCC	3 cut(s)	118, 545, 562
ApeKI	GCWGC	4 cut(s)	154, 163, 220, 1019
ApoI	RAATTY	2 cut(s)	789, 1065
Asp700I	GAANNNNTTC	2 cut(s)	789, 1065
AspLEI	GCGC	1 cut(s)	308
AspS9I	GGNCC	2 cut(s)	85, 496
AsuC2I	CCSGG	1 cut(s)	443
AsuHPI	GGTGA	4 cut(s)	292, 837, 922, 1061
AvaI	CYCGRG	1 cut(s)	917
AvaII	GGWCC	2 cut(s)	85, 496
BanII	GRGCYC	1 cut(s)	987
BarI	GAAGNNNNNNTAC	2 cut(s)	316, 348
Bbv12I	GWGCWC	2 cut(s)	213, 987
BbvI	GCAGC	4 cut(s)	141, 175, 207, 1031
BccI	CCATC	5 cut(s)	18, 98, 376, 689, 1078
BceAI	ACGGC	2 cut(s)	131, 577
BcgI	CGANNNNNNTGC	2 cut(s)	472, 506
BciT130I	CCWGG	1 cut(s)	278
BcnI	CCSGG	1 cut(s)	443
BcoDI	GTCTC	4 cut(s)	35, 41, 391, 707
BcuI	ACTAGT	1 cut(s)	649
BfaI	CTAG	4 cut(s)	336, 351, 464, 650
BfmI	CTRYAG	2 cut(s)	183, 221
BglII	AGATCT	1 cut(s)	945
BisI	GCNGC	8 cut(s)	144, 152, 155, 164, 199, 221, 565, 1020
BlsI	GCNGC	8 cut(s)	145, 153, 156, 165, 200, 222, 566, 1021
Bme1390I	CCNGG	2 cut(s)	278, 443
Bme18I	GGWCC	2 cut(s)	85, 496
BmeT110I	CYCGRG	1 cut(s)	917
BmgT120I	GGNCC	2 cut(s)	85, 496
BmiI	GGNNCC	2 cut(s)	87, 268
BmrFI	CCNGG	2 cut(s)	278, 443
BmsI	GCATC	3 cut(s)	169, 544, 856
BplI	GAGNNNNNCTC	2 cut(s)	969, 1001
BpmI	CTGGAG	1 cut(s)	824
BpuMI	CCSGG	1 cut(s)	443
BsaBI	GATNNNNATC	2 cut(s)	77, 602
BsaI	GGTCTC	1 cut(s)	707
BsaJI	CCNNGG	3 cut(s)	565, 617, 933
Bsc4I	CCNNNNNNNGG	4 cut(s)	158, 448, 523, 939
Bse1I	ACTGG	1 cut(s)	807
Bse8I	GATNNNNATC	2 cut(s)	77, 602
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	3 cut(s)	565, 617, 933
BseGI	GGATG	5 cut(s)	451, 532, 538, 667, 1070
BseJI	GATNNNNATC	2 cut(s)	77, 602
BseLI	CCNNNNNNNGG	4 cut(s)	158, 448, 523, 939
BseMII	CTCAG	1 cut(s)	867
BseNI	ACTGG	1 cut(s)	807
BseRI	GAGGAG	3 cut(s)	467, 470, 473
BseX3I	CGGCCG	1 cut(s)	562
BseXI	GCAGC	4 cut(s)	141, 175, 207, 1031
BseYI	CCCAGC	2 cut(s)	260, 938
BsgI	GTGCAG	2 cut(s)	111, 512
Bsh1236I	CGCG	1 cut(s)	567
Bsh1285I	CGRYCG	1 cut(s)	565
BshFI	GGCC	3 cut(s)	120, 547, 564
BsiEI	CGRYCG	1 cut(s)	565
BsiHKAI	GWGCWC	2 cut(s)	213, 987
BsiHKCI	CYCGRG	1 cut(s)	917
BsiSI	CCGG	1 cut(s)	443
BslFI	GGGAC	2 cut(s)	71, 663
BslI	CCNNNNNNNGG	4 cut(s)	158, 448, 523, 939
BsmAI	GTCTC	4 cut(s)	35, 41, 391, 707
BsmFI	GGGAC	2 cut(s)	71, 663
BsnI	GGCC	3 cut(s)	120, 547, 564
Bso31I	GGTCTC	1 cut(s)	707
BsoBI	CYCGRG	1 cut(s)	917
Bsp1286I	GDGCHC	2 cut(s)	213, 987
Bsp1407I	TGTACA	2 cut(s)	751, 814
Bsp143I	GATC	6 cut(s)	78, 122, 535, 580, 921, 945
BspACI	CCGC	8 cut(s)	144, 152, 157, 166, 198, 565, 567, 975
BspANI	GGCC	3 cut(s)	120, 547, 564
BspCNI	CTCAG	1 cut(s)	868
BspFNI	CGCG	1 cut(s)	567
BspLI	GGNNCC	2 cut(s)	87, 268
BspMAI	CTGCAG	1 cut(s)	225
BspPI	GGATC	2 cut(s)	530, 588
BspTNI	GGTCTC	1 cut(s)	707
BsrGI	TGTACA	2 cut(s)	751, 814
BsrI	ACTGG	1 cut(s)	807
BssECI	CCNNGG	3 cut(s)	565, 617, 933
BssMI	GATC	6 cut(s)	78, 122, 535, 580, 921, 945
BssT1I	CCWWGG	2 cut(s)	617, 933
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	718
Bst6I	CTCTTC	3 cut(s)	33, 319, 705
BstAPI	GCANNNNNTGC	1 cut(s)	866
BstAUI	TGTACA	2 cut(s)	751, 814
BstC8I	GCNNGC	4 cut(s)	110, 168, 172, 836
BstDEI	CTNAG	1 cut(s)	876
BstDSI	CCRYGG	1 cut(s)	565
BstF5I	GGATG	5 cut(s)	451, 532, 538, 667, 1070
BstFNI	CGCG	1 cut(s)	567
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	6 cut(s)	81, 125, 538, 583, 924, 948
BstMAI	GTCTC	4 cut(s)	35, 41, 391, 707
BstMBI	GATC	6 cut(s)	78, 122, 535, 580, 921, 945
BstMCI	CGRYCG	1 cut(s)	565
BstMWI	GCNNNNNNNGC	9 cut(s)	160, 163, 188, 217, 226, 312, 366, 866, 1028
BstNI	CCWGG	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	112
BstSCI	CCNGG	2 cut(s)	276, 441
BstSFI	CTRYAG	2 cut(s)	183, 221
BstUI	CGCG	1 cut(s)	567
BstV1I	GCAGC	4 cut(s)	141, 175, 207, 1031
BstX2I	RGATCY	1 cut(s)	945
BstYI	RGATCY	1 cut(s)	945
BstZI	CGGCCG	1 cut(s)	562
BsuRI	GGCC	3 cut(s)	120, 547, 564
BtgI	CCRYGG	1 cut(s)	565
BtsCI	GGATG	5 cut(s)	451, 532, 538, 667, 1070
BtsI	GCAGTG	2 cut(s)	236, 696
BtsIMutI	CAGTG	2 cut(s)	236, 696
Cac8I	GCNNGC	4 cut(s)	110, 168, 172, 836
CfoI	GCGC	1 cut(s)	308
Cfr13I	GGNCC	2 cut(s)	85, 496
Cfr42I	CCGCGG	1 cut(s)	568
Csp6I	GTAC	2 cut(s)	752, 815
CviAII	CATG	4 cut(s)	17, 109, 881, 1095
CviQI	GTAC	2 cut(s)	752, 815
DdeI	CTNAG	1 cut(s)	876
DpnI	GATC	6 cut(s)	80, 124, 537, 582, 923, 947
DpnII	GATC	6 cut(s)	78, 122, 535, 580, 921, 945
DrdI	GACNNNNNNGTC	1 cut(s)	503
DseDI	GACNNNNNNGTC	1 cut(s)	503
EaeI	YGGCCR	1 cut(s)	562
EagI	CGGCCG	1 cut(s)	562
Eam1104I	CTCTTC	3 cut(s)	33, 319, 705
EarI	CTCTTC	3 cut(s)	33, 319, 705
Ecl136II	GAGCTC	1 cut(s)	985
EclXI	CGGCCG	1 cut(s)	562
Eco130I	CCWWGG	2 cut(s)	617, 933
Eco24I	GRGCYC	1 cut(s)	987
Eco31I	GGTCTC	1 cut(s)	707
Eco47I	GGWCC	2 cut(s)	85, 496
Eco52I	CGGCCG	1 cut(s)	562
Eco53kI	GAGCTC	1 cut(s)	985
Eco88I	CYCGRG	1 cut(s)	917
EcoICRI	GAGCTC	1 cut(s)	985
EcoO109I	RGGNCCY	2 cut(s)	85, 496
EcoRII	CCWGG	1 cut(s)	276
EcoT14I	CCWWGG	2 cut(s)	617, 933
EcoT38I	GRGCYC	1 cut(s)	987
ErhI	CCWWGG	2 cut(s)	617, 933
FaeI	CATG	4 cut(s)	20, 112, 884, 1098
FaqI	GGGAC	2 cut(s)	71, 663
FatI	CATG	4 cut(s)	16, 108, 880, 1094
FauI	CCCGC	2 cut(s)	150, 159
FblI	GTMKAC	1 cut(s)	912
Fnu4HI	GCNGC	8 cut(s)	144, 152, 155, 164, 199, 221, 565, 1020
FokI	GGATG	5 cut(s)	458, 539, 545, 674, 1057
FriOI	GRGCYC	1 cut(s)	987
Fsp4HI	GCNGC	8 cut(s)	144, 152, 155, 164, 199, 221, 565, 1020
FspBI	CTAG	4 cut(s)	336, 351, 464, 650
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	8 cut(s)	144, 152, 155, 164, 199, 221, 565, 1020
GsaI	CCCAGC	2 cut(s)	264, 942
GsuI	CTGGAG	1 cut(s)	824
HaeIII	GGCC	3 cut(s)	120, 547, 564
HapII	CCGG	1 cut(s)	443
HhaI	GCGC	1 cut(s)	308
Hin1II	CATG	4 cut(s)	20, 112, 884, 1098
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HinfI	GANTC	1 cut(s)	386
HpaII	CCGG	1 cut(s)	443
HphI	GGTGA	4 cut(s)	292, 837, 922, 1061
Hpy166II	GTNNAC	2 cut(s)	508, 913
Hpy188I	TCNGA	3 cut(s)	33, 391, 795
Hpy188III	TCNNGA	3 cut(s)	94, 539, 956
Hpy8I	GTNNAC	2 cut(s)	508, 913
Hpy99I	CGWCG	3 cut(s)	179, 563, 632
HpyAV	CCTTC	7 cut(s)	59, 63, 280, 509, 616, 802, 852
HpyCH4III	ACNGT	1 cut(s)	718
HpyCH4V	TGCA	7 cut(s)	112, 128, 223, 234, 493, 834, 860
HpyF10VI	GCNNNNNNNGC	9 cut(s)	160, 163, 188, 217, 226, 312, 366, 866, 1028
HpyF3I	CTNAG	1 cut(s)	876
Hsp92II	CATG	4 cut(s)	20, 112, 884, 1098
HspAI	GCGC	1 cut(s)	306
KspI	CCGCGG	1 cut(s)	568
Kzo9I	GATC	6 cut(s)	78, 122, 535, 580, 921, 945
LmnI	GCTCC	3 cut(s)	22, 460, 1016
Lsp1109I	GCAGC	4 cut(s)	141, 175, 207, 1031
LweI	GCATC	3 cut(s)	169, 544, 856
MaeI	CTAG	4 cut(s)	336, 351, 464, 650
MaeIII	GTNAC	3 cut(s)	331, 638, 871
MalI	GATC	6 cut(s)	80, 124, 537, 582, 923, 947
MboI	GATC	6 cut(s)	78, 122, 535, 580, 921, 945
MboII	GAAGA	6 cut(s)	50, 336, 722, 919, 955, 1073
MfeI	CAATTG	1 cut(s)	861
MflI	RGATCY	1 cut(s)	945
MhlI	GDGCHC	2 cut(s)	213, 987
MluCI	AATT	9 cut(s)	417, 584, 667, 789, 819, 829, 861, 1044, 1065
MmeI	TCCRAC	2 cut(s)	411, 558
MnlI	CCTC	9 cut(s)	76, 322, 358, 445, 448, 451, 477, 523, 527
MroXI	GAANNNNTTC	2 cut(s)	789, 1065
MslI	CAYNNNNRTG	4 cut(s)	15, 95, 206, 850
MspA1I	CMGCKG	3 cut(s)	154, 166, 567
MspI	CCGG	1 cut(s)	443
MspR9I	CCNGG	2 cut(s)	278, 443
MunI	CAATTG	1 cut(s)	861
MvaI	CCWGG	1 cut(s)	278
MvnI	CGCG	1 cut(s)	567
MwoI	GCNNNNNNNGC	9 cut(s)	160, 163, 188, 217, 226, 312, 366, 866, 1028
NciI	CCSGG	1 cut(s)	443
NdeII	GATC	6 cut(s)	78, 122, 535, 580, 921, 945
NlaIII	CATG	4 cut(s)	20, 112, 884, 1098
NlaIV	GGNNCC	2 cut(s)	87, 268
NmuCI	GTSAC	1 cut(s)	638
NspI	RCATGY	1 cut(s)	112
OliI	CACNNNNGTG	1 cut(s)	206
PaeI	GCATGC	1 cut(s)	112
PdmI	GAANNNNTTC	2 cut(s)	789, 1065
PfeI	GAWTC	1 cut(s)	386
PkrI	GCNGC	8 cut(s)	145, 153, 156, 165, 200, 222, 566, 1021
PpuMI	RGGWCCY	2 cut(s)	85, 496
Psp124BI	GAGCTC	1 cut(s)	987
Psp5II	RGGWCCY	2 cut(s)	85, 496
Psp6I	CCWGG	1 cut(s)	276
PspFI	CCCAGC	2 cut(s)	260, 938
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	2 cut(s)	87, 268
PspPI	GGNCC	2 cut(s)	85, 496
PspPPI	RGGWCCY	2 cut(s)	85, 496
PstI	CTGCAG	1 cut(s)	225
PsuI	RGATCY	1 cut(s)	945
RsaI	GTAC	2 cut(s)	753, 816
RsaNI	GTAC	2 cut(s)	752, 815
RseI	CAYNNNNRTG	4 cut(s)	15, 95, 206, 850
SacI	GAGCTC	1 cut(s)	987
SacII	CCGCGG	1 cut(s)	568
SatI	GCNGC	8 cut(s)	144, 152, 155, 164, 199, 221, 565, 1020
Sau3AI	GATC	6 cut(s)	78, 122, 535, 580, 921, 945
Sau96I	GGNCC	2 cut(s)	85, 496
ScrFI	CCNGG	2 cut(s)	278, 443
SduI	GDGCHC	2 cut(s)	213, 987
SfaNI	GCATC	3 cut(s)	169, 544, 856
SfcI	CTRYAG	2 cut(s)	183, 221
Sfr303I	CCGCGG	1 cut(s)	568
SgrBI	CCGCGG	1 cut(s)	568
SinI	GGWCC	2 cut(s)	85, 496
SmiMI	CAYNNNNRTG	4 cut(s)	15, 95, 206, 850
SpeI	ACTAGT	1 cut(s)	649
SphI	GCATGC	1 cut(s)	112
Sse9I	AATT	9 cut(s)	417, 584, 667, 789, 819, 829, 861, 1044, 1065
SsiI	CCGC	8 cut(s)	144, 152, 157, 166, 198, 565, 567, 975
SspMI	CTAG	4 cut(s)	336, 351, 464, 650
SstI	GAGCTC	1 cut(s)	987
StyD4I	CCNGG	2 cut(s)	276, 441
StyI	CCWWGG	2 cut(s)	617, 933
TaaI	ACNGT	1 cut(s)	718
TaqI	TCGA	1 cut(s)	81
TasI	AATT	9 cut(s)	417, 584, 667, 789, 819, 829, 861, 1044, 1065
TatI	WGTACW	2 cut(s)	751, 814
TauI	GCSGC	4 cut(s)	146, 154, 201, 567
TfiI	GAWTC	1 cut(s)	386
TscAI	CASTG	2 cut(s)	236, 703
TseFI	GTSAC	1 cut(s)	638
TseI	GCWGC	4 cut(s)	154, 163, 220, 1019
Tsp45I	GTSAC	1 cut(s)	638
TspDTI	ATGAA	4 cut(s)	17, 78, 660, 798
TspRI	CASTG	2 cut(s)	236, 703
VpaK11BI	GGWCC	2 cut(s)	85, 496
XapI	RAATTY	2 cut(s)	789, 1065
XceI	RCATGY	1 cut(s)	112
XmiI	GTMKAC	1 cut(s)	912
XmnI	GAANNNNTTC	2 cut(s)	789, 1065
XspI	CTAG	4 cut(s)	336, 351, 464, 650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.