Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007316

Physical Location & Seq

Genomic Coordinates Forward (+)

209480 .. 213853

Gene Structure 4374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46003

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCTCTGCAACATGCTATGAGGCTCCCATATCTCTTCTCCTCATCAACACACAACAAACCCATTTCGTTGATTAGTCGTCAAGGGCATCAATTCAGGGCAGTCAGCACAAAAAGAAGATTGTATGCCTCTAGTTCAGGCGACCCCTATTTGATGGATTCTGATGAGAGACGTGAATGGAGAGAGAAAATTAGACAAGTGTTGGATAAAAACCCGGATGTGGAGGAGGAGCTAGAACCTACTGATAGGACCAGGAAAGTGCAGGACCTTCTGGCCAACTATCCTCTCGTTGTGGATGAGGATGATCCTGAATGGCCTGATGATGCCGACGGCCGTGGTTTCAAGTTGGATCAATTCTTTGACAAGATTACCATCAACAACACTCCAAGGAAGGATGACGACGATGATAGTGACAATGAACTAGTATGGCAAGATGATAATTATATTCGTCCCATCAAAGATATAACCACTGCTGAATGGGAAGAGACCGTTTTCAAGGACATTAGCCCTTTGGTCATTCTTGTACATAATCGCTATAAAAGACCAAAAGAGAATGAAAAAATTCGGGCTGAACTGGATAAGGCTGTACAAATTATATGGAATTGCAGGCTACCTTCACCAAGATGTATTGCAATTGATGCTGTTACTGAGCATGACTTGGTTTCTGCTCTCCAAGTGTCTGTCTACCCCGAGATCATCTTCACCAAGGCTGGGAAGATCTTGTATCGTGACAAAGCAATACGAAGCGGAGATGAGCTCTCAAAAGTAATGGCTTTCTTTTACTATGGAGCAGCCAAACCAGCTTGTTTGAATGGAATTGGTGATAGGCAGGAAGAAATTCCATCCATTCCTATCAATGCCCAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

289

Amino Acids

33.42

Weight (kDa)

5.09

Isoelectric Point (pI)

42.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31840 AT2G31840
fragaria_vesca	FvH4_1g00130 FvH4_1g00130 FvH4_1g00130 FvH4_1g00130
malus_domestica	MD15G1142700.v1.1
prunus_persica	Prupe.7G270500_v2.0.a1 Prupe.7G270500_v2.0.a1
pyrus_communis	pycom15g12870
rosa_chinensis	RchiOBHm_Chr2g0084441
rosa_laevigata	RLG00000015617
rosa_multiflora	Rmu_sc0009404.1_g000006 Rmu_sc0025868.1_g000001
rosa_roxburghii	Rroxscaffold_2G00156080
rosa_rugosa	Rorug01G0453600 Rorug01G0453700 Rorug01G0453700 Rorug01G0453800 Rorug01G0453900
rosa_samantha	Rh2AG001900 Rh2BG001600 Rh2CG001800 Rh2DG002000
rosa_wichuraiana	Rw2G000160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	684
AciI	CCGC	1 cut(s)	747
AclWI	GGATC	2 cut(s)	299, 357
AcoI	YGGCCR	2 cut(s)	273, 331
AcsI	RAATTY	2 cut(s)	561, 837
AfaI	GTAC	2 cut(s)	525, 588
AfiI	CCNNNNNNNGG	2 cut(s)	220, 711
AgsI	TTSAA	3 cut(s)	343, 496, 811
AhlI	ACTAGT	1 cut(s)	421
AjiI	CACGTC	1 cut(s)	173
AjnI	CCWGG	1 cut(s)	251
AluBI	AGCT	3 cut(s)	232, 757, 803
AluI	AGCT	3 cut(s)	232, 757, 803
Alw21I	GWGCWC	1 cut(s)	759
Alw26I	GTCTC	2 cut(s)	163, 479
AlwI	GGATC	2 cut(s)	299, 357
Ama87I	CYCGRG	1 cut(s)	689
AoxI	GGCC	3 cut(s)	273, 314, 331
ApeKI	GCWGC	1 cut(s)	791
ApoI	RAATTY	2 cut(s)	561, 837
Asp700I	GAANNNNTTC	2 cut(s)	561, 837
AspS9I	GGNCC	2 cut(s)	249, 265
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	3 cut(s)	609, 694, 833
AvaI	CYCGRG	1 cut(s)	689
AvaII	GGWCC	2 cut(s)	249, 265
BalI	TGGCCA	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	759
Bbv12I	GWGCWC	1 cut(s)	759
BbvI	GCAGC	1 cut(s)	803
BccI	CCATC	4 cut(s)	148, 380, 461, 850
BceAI	ACGGC	2 cut(s)	318, 346
BciT130I	CCWGG	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	215
BcoDI	GTCTC	2 cut(s)	163, 479
BcuI	ACTAGT	1 cut(s)	421
BfaI	CTAG	3 cut(s)	132, 233, 422
BglII	AGATCT	1 cut(s)	717
BisI	GCNGC	1 cut(s)	792
BlsI	GCNGC	1 cut(s)	793
Bme1390I	CCNGG	2 cut(s)	215, 253
Bme18I	GGWCC	2 cut(s)	249, 265
BmeT110I	CYCGRG	1 cut(s)	689
BmgBI	CACGTC	1 cut(s)	173
BmgT120I	GGNCC	2 cut(s)	249, 265
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	2 cut(s)	215, 253
BmsI	GCATC	3 cut(s)	97, 313, 628
BplI	GAGNNNNNCTC	2 cut(s)	741, 773
BpuMI	CCSGG	1 cut(s)	215
BsaBI	GATNNNNATC	1 cut(s)	371
BsaI	GGTCTC	1 cut(s)	479
BsaJI	CCNNGG	3 cut(s)	334, 386, 705
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 711
Bse1I	ACTGG	1 cut(s)	579
Bse8I	GATNNNNATC	1 cut(s)	371
BseBI	CCWGG	1 cut(s)	253
BseDI	CCNNGG	3 cut(s)	334, 386, 705
BseGI	GGATG	5 cut(s)	223, 301, 307, 400, 842
BseJI	GATNNNNATC	1 cut(s)	371
BseLI	CCNNNNNNNGG	2 cut(s)	220, 711
BseMII	CTCAG	1 cut(s)	639
BseNI	ACTGG	1 cut(s)	579
BseRI	GAGGAG	3 cut(s)	31, 239, 242
BseX3I	CGGCCG	1 cut(s)	331
BseXI	GCAGC	1 cut(s)	803
BseYI	CCCAGC	1 cut(s)	710
BsgI	GTGCAG	1 cut(s)	281
Bsh1285I	CGRYCG	1 cut(s)	334
BshFI	GGCC	3 cut(s)	275, 316, 333
BsiEI	CGRYCG	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	759
BsiHKCI	CYCGRG	1 cut(s)	689
BsiSI	CCGG	1 cut(s)	215
BslFI	GGGAC	1 cut(s)	435
BslI	CCNNNNNNNGG	2 cut(s)	220, 711
BsmAI	GTCTC	2 cut(s)	163, 479
BsmBI	CGTCTC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	435
BsnI	GGCC	3 cut(s)	275, 316, 333
Bso31I	GGTCTC	1 cut(s)	479
BsoBI	CYCGRG	1 cut(s)	689
Bsp1286I	GDGCHC	1 cut(s)	759
Bsp1407I	TGTACA	2 cut(s)	523, 586
Bsp143I	GATC	4 cut(s)	304, 349, 693, 717
BspACI	CCGC	1 cut(s)	747
BspANI	GGCC	3 cut(s)	275, 316, 333
BspCNI	CTCAG	1 cut(s)	640
BspLI	GGNNCC	1 cut(s)	26
BspPI	GGATC	2 cut(s)	299, 357
BspTNI	GGTCTC	1 cut(s)	479
BsrGI	TGTACA	2 cut(s)	523, 586
BsrI	ACTGG	1 cut(s)	579
BssECI	CCNNGG	3 cut(s)	334, 386, 705
BssMI	GATC	4 cut(s)	304, 349, 693, 717
BssT1I	CCWWGG	2 cut(s)	386, 705
Bst2UI	CCWGG	1 cut(s)	253
Bst4CI	ACNGT	1 cut(s)	490
Bst6I	CTCTTC	2 cut(s)	41, 477
BstAPI	GCANNNNNTGC	1 cut(s)	638
BstAUI	TGTACA	2 cut(s)	523, 586
BstC8I	GCNNGC	1 cut(s)	608
BstDEI	CTNAG	1 cut(s)	648
BstDSI	CCRYGG	1 cut(s)	334
BstF5I	GGATG	5 cut(s)	223, 301, 307, 400, 842
BstKTI	GATC	4 cut(s)	307, 352, 696, 720
BstMAI	GTCTC	2 cut(s)	163, 479
BstMBI	GATC	4 cut(s)	304, 349, 693, 717
BstMCI	CGRYCG	1 cut(s)	334
BstMWI	GCNNNNNNNGC	2 cut(s)	638, 800
BstNI	CCWGG	1 cut(s)	253
BstNSI	RCATGY	1 cut(s)	17
BstSCI	CCNGG	2 cut(s)	213, 251
BstV1I	GCAGC	1 cut(s)	803
BstX2I	RGATCY	1 cut(s)	717
BstYI	RGATCY	1 cut(s)	717
BstZI	CGGCCG	1 cut(s)	331
BsuRI	GGCC	3 cut(s)	275, 316, 333
BtgI	CCRYGG	1 cut(s)	334
BtrI	CACGTC	1 cut(s)	173
BtsCI	GGATG	5 cut(s)	223, 301, 307, 400, 842
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	1 cut(s)	608
Cfr13I	GGNCC	2 cut(s)	249, 265
Csp6I	GTAC	2 cut(s)	524, 587
CviAII	CATG	3 cut(s)	14, 653, 867
CviQI	GTAC	2 cut(s)	524, 587
DdeI	CTNAG	1 cut(s)	648
DpnI	GATC	4 cut(s)	306, 351, 695, 719
DpnII	GATC	4 cut(s)	304, 349, 693, 717
EaeI	YGGCCR	2 cut(s)	273, 331
EagI	CGGCCG	1 cut(s)	331
Eam1104I	CTCTTC	2 cut(s)	41, 477
EarI	CTCTTC	2 cut(s)	41, 477
Ecl136II	GAGCTC	1 cut(s)	757
EclXI	CGGCCG	1 cut(s)	331
Eco130I	CCWWGG	2 cut(s)	386, 705
Eco24I	GRGCYC	1 cut(s)	759
Eco31I	GGTCTC	1 cut(s)	479
Eco47I	GGWCC	2 cut(s)	249, 265
Eco52I	CGGCCG	1 cut(s)	331
Eco53kI	GAGCTC	1 cut(s)	757
Eco88I	CYCGRG	1 cut(s)	689
EcoICRI	GAGCTC	1 cut(s)	757
EcoO109I	RGGNCCY	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	251
EcoT14I	CCWWGG	2 cut(s)	386, 705
EcoT38I	GRGCYC	1 cut(s)	759
ErhI	CCWWGG	2 cut(s)	386, 705
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	3 cut(s)	17, 656, 870
FaqI	GGGAC	1 cut(s)	435
FatI	CATG	3 cut(s)	13, 652, 866
FblI	GTMKAC	1 cut(s)	684
Fnu4HI	GCNGC	1 cut(s)	792
FokI	GGATG	5 cut(s)	230, 308, 314, 407, 829
FriOI	GRGCYC	1 cut(s)	759
Fsp4HI	GCNGC	1 cut(s)	792
FspBI	CTAG	3 cut(s)	132, 233, 422
GluI	GCNGC	1 cut(s)	792
GsaI	CCCAGC	1 cut(s)	714
HaeIII	GGCC	3 cut(s)	275, 316, 333
HapII	CCGG	1 cut(s)	215
Hin1II	CATG	3 cut(s)	17, 656, 870
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	3 cut(s)	609, 694, 833
Hpy166II	GTNNAC	1 cut(s)	685
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	2 cut(s)	308, 728
Hpy8I	GTNNAC	1 cut(s)	685
Hpy99I	CGWCG	2 cut(s)	332, 404
HpyAV	CCTTC	3 cut(s)	278, 385, 624
HpyCH4III	ACNGT	1 cut(s)	490
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	4 cut(s)	10, 262, 606, 632
HpyF10VI	GCNNNNNNNGC	2 cut(s)	638, 800
HpyF3I	CTNAG	1 cut(s)	648
HpySE526I	ACGT	1 cut(s)	172
Hsp92II	CATG	3 cut(s)	17, 656, 870
Kzo9I	GATC	4 cut(s)	304, 349, 693, 717
LmnI	GCTCC	3 cut(s)	30, 229, 788
Lsp1109I	GCAGC	1 cut(s)	803
LweI	GCATC	3 cut(s)	97, 313, 628
MaeI	CTAG	3 cut(s)	132, 233, 422
MaeII	ACGT	1 cut(s)	172
MaeIII	GTNAC	3 cut(s)	410, 643, 728
MalI	GATC	4 cut(s)	306, 351, 695, 719
MboI	GATC	4 cut(s)	304, 349, 693, 717
MboII	GAAGA	6 cut(s)	28, 129, 494, 691, 727, 845
MfeI	CAATTG	1 cut(s)	633
MflI	RGATCY	1 cut(s)	717
MhlI	GDGCHC	1 cut(s)	759
MlsI	TGGCCA	1 cut(s)	275
MluNI	TGGCCA	1 cut(s)	275
MmeI	TCCRAC	2 cut(s)	183, 327
MnlI	CCTC	7 cut(s)	15, 52, 139, 217, 220, 292, 294
Mox20I	TGGCCA	1 cut(s)	275
MroXI	GAANNNNTTC	2 cut(s)	561, 837
MscI	TGGCCA	1 cut(s)	275
MslI	CAYNNNNRTG	1 cut(s)	622
Msp20I	TGGCCA	1 cut(s)	275
MspI	CCGG	1 cut(s)	215
MspR9I	CCNGG	2 cut(s)	215, 253
MunI	CAATTG	1 cut(s)	633
MvaI	CCWGG	1 cut(s)	253
MwoI	GCNNNNNNNGC	2 cut(s)	638, 800
NciI	CCSGG	1 cut(s)	215
NdeII	GATC	4 cut(s)	304, 349, 693, 717
NlaIII	CATG	3 cut(s)	17, 656, 870
NlaIV	GGNNCC	1 cut(s)	26
NmuCI	GTSAC	2 cut(s)	410, 728
NspI	RCATGY	1 cut(s)	17
PdmI	GAANNNNTTC	2 cut(s)	561, 837
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	793
PpuMI	RGGWCCY	1 cut(s)	265
Psp124BI	GAGCTC	1 cut(s)	759
Psp5II	RGGWCCY	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	251
PspFI	CCCAGC	1 cut(s)	710
PspGI	CCWGG	1 cut(s)	251
PspN4I	GGNNCC	1 cut(s)	26
PspPI	GGNCC	2 cut(s)	249, 265
PspPPI	RGGWCCY	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	717
RsaI	GTAC	2 cut(s)	525, 588
RsaNI	GTAC	2 cut(s)	524, 587
RseI	CAYNNNNRTG	1 cut(s)	622
SacI	GAGCTC	1 cut(s)	759
SatI	GCNGC	1 cut(s)	792
Sau3AI	GATC	4 cut(s)	304, 349, 693, 717
Sau96I	GGNCC	2 cut(s)	249, 265
ScrFI	CCNGG	2 cut(s)	215, 253
SduI	GDGCHC	1 cut(s)	759
SetI	ASST	7 cut(s)	175, 234, 241, 270, 616, 759, 805
SfaNI	GCATC	3 cut(s)	97, 313, 628
SinI	GGWCC	2 cut(s)	249, 265
SmiMI	CAYNNNNRTG	1 cut(s)	622
SpeI	ACTAGT	1 cut(s)	421
SsiI	CCGC	1 cut(s)	747
SspMI	CTAG	3 cut(s)	132, 233, 422
SstI	GAGCTC	1 cut(s)	759
StyD4I	CCNGG	2 cut(s)	213, 251
StyI	CCWWGG	2 cut(s)	386, 705
TaaI	ACNGT	1 cut(s)	490
TaiI	ACGT	1 cut(s)	175
TatI	WGTACW	2 cut(s)	523, 586
TfiI	GAWTC	1 cut(s)	158
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	2 cut(s)	410, 728
TseI	GCWGC	1 cut(s)	791
Tsp45I	GTSAC	2 cut(s)	410, 728
TspDTI	ATGAA	2 cut(s)	432, 570
TspRI	CASTG	1 cut(s)	475
VpaK11BI	GGWCC	2 cut(s)	249, 265
XapI	RAATTY	2 cut(s)	561, 837
XceI	RCATGY	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	684
XmnI	GAANNNNTTC	2 cut(s)	561, 837
XspI	CTAG	3 cut(s)	132, 233, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.