Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007316

Physical Location & Seq

Genomic Coordinates Forward (+)

156675 .. 157964

Gene Structure 1290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG002000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCTCTGCAACATGCTATGCGGCTCCCATATCTGTTCTCCTCATCAACACACAACAAACCCATTTCGTTGATTAGTCGTCTAGGGCATCAATTCAGGGCAGTCAGCACAAAAAGAAGATTGTATGCCTCTAGTTCAGGCGACCCCTATTTGATGGATTCTGATGAGAGACTTGAATGGAGAGAGAAAATTAGACAAGTGTTGGATAAAAACCCGGATGTGGAGGAGGAGGAGGAGGAGCTAGACCCTACTGATAGGACCAGGAAAGTGCAGGACCTTCTGGCCAACTATCCTCTCGTTGTGGATGAGGATGATCCTGAATGGCCTGATGATGCCGACGGCCGTGGTTTCAAGTTGGATCAATTCTTTGACAAGATTACCATCAAGAACACTCCAAGGAAGGATGACAATGACGACGACGATGATAGTGACAATGAACTAGTATGGCAAGATGATAATTATATTCGTCCCATCAAAGATATAACCACTGCTGAATGGGAAGAGACCGTTTTCAAGGACATTAGCCCTTTGGTCATTCTTGTACATAATCGCTATAAAAGACCAAAAGAGAATGAAAAAATTCGGACTGAACTGGAGAAGGCTGTACAAATTATATGGAATTGCAGGCTACCTTCACCAAGATGTATTGCAATTGATGCTGTTACTGAGCATGACTTGGTTTCTGCTCTCCAAGTGTCTGTCTACCCCGAGATCATCTTCACCAAGGCTGGGAAGATCTTGTATCGTGACAAAGCAATACGAAGCGGAGATGAGCTCTCAAAAGTAATGGCTTTCTTTTACTATGGAGCAGCCAAACCAGCTTGTTTGAATGGAATTGGTGATAGGCAGGAAGAAATTCCATCCATTCCTATCAATGCCCAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

295

Amino Acids

34.14

Weight (kDa)

4.85

Isoelectric Point (pI)

42.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31840 AT2G31840
fragaria_vesca	FvH4_1g00130 FvH4_1g00130 FvH4_1g00130 FvH4_1g00130
malus_domestica	MD15G1142700.v1.1
prunus_persica	Prupe.7G270500_v2.0.a1 Prupe.7G270500_v2.0.a1
pyrus_communis	pycom15g12870
rosa_chinensis	RchiOBHm_Chr2g0084441
rosa_laevigata	RLG00000015617
rosa_multiflora	Rmu_sc0009404.1_g000006 Rmu_sc0025868.1_g000001
rosa_roxburghii	Rroxscaffold_2G00156080
rosa_rugosa	Rorug01G0453600 Rorug01G0453700 Rorug01G0453700 Rorug01G0453800 Rorug01G0453900
rosa_samantha	Rh2AG001900 Rh2BG001600 Rh2CG001800 Rh2DG002000
rosa_wichuraiana	Rw2G000160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	702
AciI	CCGC	2 cut(s)	22, 765
AclWI	GGATC	2 cut(s)	308, 366
AcoI	YGGCCR	2 cut(s)	282, 340
AcsI	RAATTY	2 cut(s)	579, 855
AfaI	GTAC	2 cut(s)	543, 606
AfiI	CCNNNNNNNGG	2 cut(s)	220, 729
AgsI	TTSAA	4 cut(s)	176, 352, 514, 829
AhlI	ACTAGT	1 cut(s)	439
AjnI	CCWGG	1 cut(s)	260
AluBI	AGCT	3 cut(s)	241, 775, 821
AluI	AGCT	3 cut(s)	241, 775, 821
Alw21I	GWGCWC	1 cut(s)	777
Alw26I	GTCTC	2 cut(s)	163, 497
AlwI	GGATC	2 cut(s)	308, 366
Ama87I	CYCGRG	1 cut(s)	707
AoxI	GGCC	3 cut(s)	282, 323, 340
ApeKI	GCWGC	1 cut(s)	809
ApoI	RAATTY	2 cut(s)	579, 855
Asp700I	GAANNNNTTC	2 cut(s)	579, 855
AspS9I	GGNCC	2 cut(s)	258, 274
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	3 cut(s)	627, 712, 851
AvaI	CYCGRG	1 cut(s)	707
AvaII	GGWCC	2 cut(s)	258, 274
BalI	TGGCCA	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	777
Bbv12I	GWGCWC	1 cut(s)	777
BbvI	GCAGC	1 cut(s)	821
BccI	CCATC	4 cut(s)	148, 389, 479, 868
BceAI	ACGGC	2 cut(s)	327, 355
BciT130I	CCWGG	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	215
BcoDI	GTCTC	2 cut(s)	163, 497
BcuI	ACTAGT	1 cut(s)	439
BfaI	CTAG	4 cut(s)	83, 132, 242, 440
BglII	AGATCT	1 cut(s)	735
BisI	GCNGC	2 cut(s)	23, 810
BlsI	GCNGC	2 cut(s)	24, 811
Bme1390I	CCNGG	2 cut(s)	215, 262
Bme18I	GGWCC	2 cut(s)	258, 274
BmeT110I	CYCGRG	1 cut(s)	707
BmgT120I	GGNCC	2 cut(s)	258, 274
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	2 cut(s)	215, 262
BmsI	GCATC	3 cut(s)	97, 322, 646
BplI	GAGNNNNNCTC	2 cut(s)	759, 791
BpmI	CTGGAG	1 cut(s)	614
BpuMI	CCSGG	1 cut(s)	215
BsaBI	GATNNNNATC	1 cut(s)	380
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	3 cut(s)	343, 395, 723
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 729
Bse1I	ACTGG	1 cut(s)	597
Bse8I	GATNNNNATC	1 cut(s)	380
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	3 cut(s)	343, 395, 723
BseGI	GGATG	5 cut(s)	223, 310, 316, 409, 860
BseJI	GATNNNNATC	1 cut(s)	380
BseLI	CCNNNNNNNGG	2 cut(s)	220, 729
BseMII	CTCAG	1 cut(s)	657
BseNI	ACTGG	1 cut(s)	597
BseRI	GAGGAG	6 cut(s)	31, 239, 242, 245, 248, 251
BseX3I	CGGCCG	1 cut(s)	340
BseXI	GCAGC	1 cut(s)	821
BseYI	CCCAGC	1 cut(s)	728
BsgI	GTGCAG	1 cut(s)	290
Bsh1285I	CGRYCG	1 cut(s)	343
BshFI	GGCC	3 cut(s)	284, 325, 342
BsiEI	CGRYCG	1 cut(s)	343
BsiHKAI	GWGCWC	1 cut(s)	777
BsiHKCI	CYCGRG	1 cut(s)	707
BsiSI	CCGG	1 cut(s)	215
BslFI	GGGAC	1 cut(s)	453
BslI	CCNNNNNNNGG	2 cut(s)	220, 729
BsmAI	GTCTC	2 cut(s)	163, 497
BsmFI	GGGAC	1 cut(s)	453
BsnI	GGCC	3 cut(s)	284, 325, 342
Bso31I	GGTCTC	1 cut(s)	497
BsoBI	CYCGRG	1 cut(s)	707
Bsp1286I	GDGCHC	1 cut(s)	777
Bsp1407I	TGTACA	2 cut(s)	541, 604
Bsp143I	GATC	4 cut(s)	313, 358, 711, 735
BspACI	CCGC	2 cut(s)	22, 765
BspANI	GGCC	3 cut(s)	284, 325, 342
BspCNI	CTCAG	1 cut(s)	658
BspLI	GGNNCC	1 cut(s)	26
BspPI	GGATC	2 cut(s)	308, 366
BspTNI	GGTCTC	1 cut(s)	497
BsrGI	TGTACA	2 cut(s)	541, 604
BsrI	ACTGG	1 cut(s)	597
BssECI	CCNNGG	3 cut(s)	343, 395, 723
BssMI	GATC	4 cut(s)	313, 358, 711, 735
BssT1I	CCWWGG	2 cut(s)	395, 723
Bst2UI	CCWGG	1 cut(s)	262
Bst4CI	ACNGT	1 cut(s)	508
Bst6I	CTCTTC	1 cut(s)	495
BstAPI	GCANNNNNTGC	1 cut(s)	656
BstAUI	TGTACA	2 cut(s)	541, 604
BstC8I	GCNNGC	1 cut(s)	626
BstDEI	CTNAG	1 cut(s)	666
BstDSI	CCRYGG	1 cut(s)	343
BstF5I	GGATG	5 cut(s)	223, 310, 316, 409, 860
BstKTI	GATC	4 cut(s)	316, 361, 714, 738
BstMAI	GTCTC	2 cut(s)	163, 497
BstMBI	GATC	4 cut(s)	313, 358, 711, 735
BstMCI	CGRYCG	1 cut(s)	343
BstMWI	GCNNNNNNNGC	2 cut(s)	656, 818
BstNI	CCWGG	1 cut(s)	262
BstNSI	RCATGY	1 cut(s)	17
BstSCI	CCNGG	2 cut(s)	213, 260
BstV1I	GCAGC	1 cut(s)	821
BstX2I	RGATCY	1 cut(s)	735
BstYI	RGATCY	1 cut(s)	735
BstZI	CGGCCG	1 cut(s)	340
BsuRI	GGCC	3 cut(s)	284, 325, 342
BtgI	CCRYGG	1 cut(s)	343
BtsCI	GGATG	5 cut(s)	223, 310, 316, 409, 860
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	1 cut(s)	486
Cac8I	GCNNGC	1 cut(s)	626
Cfr13I	GGNCC	2 cut(s)	258, 274
Csp6I	GTAC	2 cut(s)	542, 605
CviAII	CATG	3 cut(s)	14, 671, 885
CviQI	GTAC	2 cut(s)	542, 605
DdeI	CTNAG	1 cut(s)	666
DpnI	GATC	4 cut(s)	315, 360, 713, 737
DpnII	GATC	4 cut(s)	313, 358, 711, 735
EaeI	YGGCCR	2 cut(s)	282, 340
EagI	CGGCCG	1 cut(s)	340
Eam1104I	CTCTTC	1 cut(s)	495
EarI	CTCTTC	1 cut(s)	495
Ecl136II	GAGCTC	1 cut(s)	775
EclXI	CGGCCG	1 cut(s)	340
Eco130I	CCWWGG	2 cut(s)	395, 723
Eco24I	GRGCYC	1 cut(s)	777
Eco31I	GGTCTC	1 cut(s)	497
Eco47I	GGWCC	2 cut(s)	258, 274
Eco52I	CGGCCG	1 cut(s)	340
Eco53kI	GAGCTC	1 cut(s)	775
Eco88I	CYCGRG	1 cut(s)	707
EcoICRI	GAGCTC	1 cut(s)	775
EcoO109I	RGGNCCY	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	260
EcoT14I	CCWWGG	2 cut(s)	395, 723
EcoT38I	GRGCYC	1 cut(s)	777
ErhI	CCWWGG	2 cut(s)	395, 723
FaeI	CATG	3 cut(s)	17, 674, 888
FaqI	GGGAC	1 cut(s)	453
FatI	CATG	3 cut(s)	13, 670, 884
FblI	GTMKAC	1 cut(s)	702
Fnu4HI	GCNGC	2 cut(s)	23, 810
FokI	GGATG	5 cut(s)	230, 317, 323, 416, 847
FriOI	GRGCYC	1 cut(s)	777
Fsp4HI	GCNGC	2 cut(s)	23, 810
FspBI	CTAG	4 cut(s)	83, 132, 242, 440
GluI	GCNGC	2 cut(s)	23, 810
GsaI	CCCAGC	1 cut(s)	732
GsuI	CTGGAG	1 cut(s)	614
HaeIII	GGCC	3 cut(s)	284, 325, 342
HapII	CCGG	1 cut(s)	215
Hin1II	CATG	3 cut(s)	17, 674, 888
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	3 cut(s)	627, 712, 851
Hpy166II	GTNNAC	1 cut(s)	703
Hpy188I	TCNGA	2 cut(s)	163, 585
Hpy188III	TCNNGA	3 cut(s)	317, 385, 746
Hpy8I	GTNNAC	1 cut(s)	703
Hpy99I	CGWCG	3 cut(s)	341, 419, 422
HpyAV	CCTTC	4 cut(s)	287, 394, 592, 642
HpyCH4III	ACNGT	1 cut(s)	508
HpyCH4V	TGCA	4 cut(s)	10, 271, 624, 650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	656, 818
HpyF3I	CTNAG	1 cut(s)	666
Hsp92II	CATG	3 cut(s)	17, 674, 888
Kzo9I	GATC	4 cut(s)	313, 358, 711, 735
LmnI	GCTCC	3 cut(s)	30, 238, 806
Lsp1109I	GCAGC	1 cut(s)	821
LweI	GCATC	3 cut(s)	97, 322, 646
MaeI	CTAG	4 cut(s)	83, 132, 242, 440
MaeIII	GTNAC	3 cut(s)	428, 661, 746
MalI	GATC	4 cut(s)	315, 360, 713, 737
MboI	GATC	4 cut(s)	313, 358, 711, 735
MboII	GAAGA	5 cut(s)	129, 512, 709, 745, 863
MfeI	CAATTG	1 cut(s)	651
MflI	RGATCY	1 cut(s)	735
MhlI	GDGCHC	1 cut(s)	777
MlsI	TGGCCA	1 cut(s)	284
MluNI	TGGCCA	1 cut(s)	284
MmeI	TCCRAC	2 cut(s)	183, 336
MnlI	CCTC	9 cut(s)	52, 139, 217, 220, 223, 226, 229, 301, 303
Mox20I	TGGCCA	1 cut(s)	284
MroXI	GAANNNNTTC	2 cut(s)	579, 855
MscI	TGGCCA	1 cut(s)	284
MslI	CAYNNNNRTG	1 cut(s)	640
Msp20I	TGGCCA	1 cut(s)	284
MspI	CCGG	1 cut(s)	215
MspR9I	CCNGG	2 cut(s)	215, 262
MunI	CAATTG	1 cut(s)	651
MvaI	CCWGG	1 cut(s)	262
MwoI	GCNNNNNNNGC	2 cut(s)	656, 818
NciI	CCSGG	1 cut(s)	215
NdeII	GATC	4 cut(s)	313, 358, 711, 735
NlaIII	CATG	3 cut(s)	17, 674, 888
NlaIV	GGNNCC	1 cut(s)	26
NmuCI	GTSAC	2 cut(s)	428, 746
NspI	RCATGY	1 cut(s)	17
PdmI	GAANNNNTTC	2 cut(s)	579, 855
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	2 cut(s)	24, 811
PpuMI	RGGWCCY	1 cut(s)	274
Psp124BI	GAGCTC	1 cut(s)	777
Psp5II	RGGWCCY	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	260
PspFI	CCCAGC	1 cut(s)	728
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	1 cut(s)	26
PspPI	GGNCC	2 cut(s)	258, 274
PspPPI	RGGWCCY	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	735
RsaI	GTAC	2 cut(s)	543, 606
RsaNI	GTAC	2 cut(s)	542, 605
RseI	CAYNNNNRTG	1 cut(s)	640
SacI	GAGCTC	1 cut(s)	777
SatI	GCNGC	2 cut(s)	23, 810
Sau3AI	GATC	4 cut(s)	313, 358, 711, 735
Sau96I	GGNCC	2 cut(s)	258, 274
ScrFI	CCNGG	2 cut(s)	215, 262
SduI	GDGCHC	1 cut(s)	777
SetI	ASST	5 cut(s)	243, 279, 634, 777, 823
SfaNI	GCATC	3 cut(s)	97, 322, 646
SinI	GGWCC	2 cut(s)	258, 274
SmiMI	CAYNNNNRTG	1 cut(s)	640
SpeI	ACTAGT	1 cut(s)	439
SsiI	CCGC	2 cut(s)	22, 765
SspMI	CTAG	4 cut(s)	83, 132, 242, 440
SstI	GAGCTC	1 cut(s)	777
StyD4I	CCNGG	2 cut(s)	213, 260
StyI	CCWWGG	2 cut(s)	395, 723
TaaI	ACNGT	1 cut(s)	508
TatI	WGTACW	2 cut(s)	541, 604
TauI	GCSGC	1 cut(s)	25
TfiI	GAWTC	1 cut(s)	158
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	2 cut(s)	428, 746
TseI	GCWGC	1 cut(s)	809
Tsp45I	GTSAC	2 cut(s)	428, 746
TspDTI	ATGAA	2 cut(s)	450, 588
TspRI	CASTG	1 cut(s)	493
VpaK11BI	GGWCC	2 cut(s)	258, 274
XapI	RAATTY	2 cut(s)	579, 855
XceI	RCATGY	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	702
XmnI	GAANNNNTTC	2 cut(s)	579, 855
XspI	CTAG	4 cut(s)	83, 132, 242, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.