chloroplast organization
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G31840 AT2G31840 |
| fragaria_vesca | FvH4_1g00130 FvH4_1g00130 FvH4_1g00130 FvH4_1g00130 |
| malus_domestica | MD15G1142700.v1.1 |
| prunus_persica | Prupe.7G270500_v2.0.a1 Prupe.7G270500_v2.0.a1 |
| pyrus_communis | pycom15g12870 |
| rosa_chinensis | RchiOBHm_Chr2g0084441 |
| rosa_laevigata | RLG00000015617 |
| rosa_multiflora | Rmu_sc0009404.1_g000006 Rmu_sc0025868.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00156080 |
| rosa_rugosa | Rorug01G0453600 Rorug01G0453700 Rorug01G0453700 Rorug01G0453800 Rorug01G0453900 |
| rosa_samantha | Rh2AG001900 Rh2BG001600 Rh2CG001800 Rh2DG002000 |
| rosa_wichuraiana | Rw2G000160 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 708 |
| AciI | CCGC | 1 cut(s) | 785 |
| AclWI | GGATC | 1 cut(s) | 308 |
| AcoI | YGGCCR | 1 cut(s) | 340 |
| AcsI | RAATTY | 1 cut(s) | 585 |
| AcuI | CTGAAG | 2 cut(s) | 192, 480 |
| AfaI | GTAC | 1 cut(s) | 612 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 229 |
| AgsI | TTSAA | 2 cut(s) | 352, 520 |
| AjiI | CACGTC | 1 cut(s) | 182 |
| AjnI | CCWGG | 1 cut(s) | 395 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 37, 69, 212, 244 |
| AluBI | AGCT | 2 cut(s) | 241, 718 |
| AluI | AGCT | 2 cut(s) | 241, 718 |
| Alw21I | GWGCWC | 1 cut(s) | 720 |
| Alw26I | GTCTC | 2 cut(s) | 172, 186 |
| AlwI | GGATC | 1 cut(s) | 308 |
| AoxI | GGCC | 2 cut(s) | 323, 340 |
| ApoI | RAATTY | 1 cut(s) | 585 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 585 |
| AspS9I | GGNCC | 1 cut(s) | 274 |
| AsuC2I | CCSGG | 1 cut(s) | 344 |
| AsuHPI | GGTGA | 1 cut(s) | 633 |
| AvaII | GGWCC | 1 cut(s) | 274 |
| BanII | GRGCYC | 1 cut(s) | 720 |
| Bbv12I | GWGCWC | 1 cut(s) | 720 |
| BbvCI | CCTCAGC | 1 cut(s) | 11 |
| BccI | CCATC | 2 cut(s) | 157, 485 |
| BceAI | ACGGC | 1 cut(s) | 355 |
| BciT130I | CCWGG | 1 cut(s) | 397 |
| BcnI | CCSGG | 1 cut(s) | 344 |
| BcoDI | GTCTC | 2 cut(s) | 172, 186 |
| BfaI | CTAG | 3 cut(s) | 132, 242, 249 |
| Bme1390I | CCNGG | 2 cut(s) | 344, 397 |
| Bme18I | GGWCC | 1 cut(s) | 274 |
| BmgBI | CACGTC | 1 cut(s) | 182 |
| BmgT120I | GGNCC | 1 cut(s) | 274 |
| BmiI | GGNNCC | 1 cut(s) | 17 |
| BmrFI | CCNGG | 2 cut(s) | 344, 397 |
| BmsI | GCATC | 3 cut(s) | 85, 322, 652 |
| BpmI | CTGGAG | 1 cut(s) | 620 |
| Bpu10I | CCTNAGC | 2 cut(s) | 11, 714 |
| BpuMI | CCSGG | 1 cut(s) | 344 |
| BsaBI | GATNNNNATC | 1 cut(s) | 380 |
| BsaJI | CCNNGG | 2 cut(s) | 343, 395 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 229 |
| Bse1I | ACTGG | 1 cut(s) | 603 |
| Bse8I | GATNNNNATC | 1 cut(s) | 380 |
| BseBI | CCWGG | 1 cut(s) | 397 |
| BseDI | CCNNGG | 2 cut(s) | 343, 395 |
| BseGI | GGATG | 4 cut(s) | 76, 310, 316, 781 |
| BseJI | GATNNNNATC | 1 cut(s) | 380 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 229 |
| BseMII | CTCAG | 2 cut(s) | 663, 705 |
| BseNI | ACTGG | 1 cut(s) | 603 |
| BseRI | GAGGAG | 2 cut(s) | 248, 251 |
| BseX3I | CGGCCG | 1 cut(s) | 340 |
| BseYI | CCCAGC | 1 cut(s) | 734 |
| BsgI | GTGCAG | 1 cut(s) | 290 |
| Bsh1285I | CGRYCG | 1 cut(s) | 343 |
| BshFI | GGCC | 2 cut(s) | 325, 342 |
| BsiEI | CGRYCG | 1 cut(s) | 343 |
| BsiHKAI | GWGCWC | 1 cut(s) | 720 |
| BsiSI | CCGG | 1 cut(s) | 343 |
| BslFI | GGGAC | 1 cut(s) | 459 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 229 |
| BsmAI | GTCTC | 2 cut(s) | 172, 186 |
| BsmBI | CGTCTC | 1 cut(s) | 172 |
| BsmFI | GGGAC | 1 cut(s) | 459 |
| BsnI | GGCC | 2 cut(s) | 325, 342 |
| Bsp1286I | GDGCHC | 1 cut(s) | 720 |
| Bsp1407I | TGTACA | 1 cut(s) | 610 |
| Bsp143I | GATC | 2 cut(s) | 198, 313 |
| BspACI | CCGC | 1 cut(s) | 785 |
| BspANI | GGCC | 2 cut(s) | 325, 342 |
| BspCNI | CTCAG | 2 cut(s) | 664, 706 |
| BspLI | GGNNCC | 1 cut(s) | 17 |
| BspPI | GGATC | 1 cut(s) | 308 |
| BsrGI | TGTACA | 1 cut(s) | 610 |
| BsrI | ACTGG | 1 cut(s) | 603 |
| BssECI | CCNNGG | 2 cut(s) | 343, 395 |
| BssMI | GATC | 2 cut(s) | 198, 313 |
| Bst2UI | CCWGG | 1 cut(s) | 397 |
| Bst4CI | ACNGT | 1 cut(s) | 514 |
| Bst6I | CTCTTC | 2 cut(s) | 32, 168 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 662 |
| BstAUI | TGTACA | 1 cut(s) | 610 |
| BstC8I | GCNNGC | 1 cut(s) | 632 |
| BstDEI | CTNAG | 4 cut(s) | 11, 672, 714, 729 |
| BstF5I | GGATG | 4 cut(s) | 76, 310, 316, 781 |
| BstKTI | GATC | 2 cut(s) | 201, 316 |
| BstMAI | GTCTC | 2 cut(s) | 172, 186 |
| BstMBI | GATC | 2 cut(s) | 198, 313 |
| BstMCI | CGRYCG | 1 cut(s) | 343 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 662 |
| BstNI | CCWGG | 1 cut(s) | 397 |
| BstSCI | CCNGG | 2 cut(s) | 342, 395 |
| BstZI | CGGCCG | 1 cut(s) | 340 |
| BsuRI | GGCC | 2 cut(s) | 325, 342 |
| BtrI | CACGTC | 1 cut(s) | 182 |
| BtsCI | GGATG | 4 cut(s) | 76, 310, 316, 781 |
| BtsIMutI | CAGTG | 1 cut(s) | 591 |
| Cac8I | GCNNGC | 1 cut(s) | 632 |
| Cfr13I | GGNCC | 1 cut(s) | 274 |
| Csp6I | GTAC | 1 cut(s) | 611 |
| CviQI | GTAC | 1 cut(s) | 611 |
| DdeI | CTNAG | 4 cut(s) | 11, 672, 714, 729 |
| DpnI | GATC | 2 cut(s) | 200, 315 |
| DpnII | GATC | 2 cut(s) | 198, 313 |
| EaeI | YGGCCR | 1 cut(s) | 340 |
| EagI | CGGCCG | 1 cut(s) | 340 |
| Eam1104I | CTCTTC | 2 cut(s) | 32, 168 |
| EarI | CTCTTC | 2 cut(s) | 32, 168 |
| Ecl136II | GAGCTC | 1 cut(s) | 718 |
| EclXI | CGGCCG | 1 cut(s) | 340 |
| Eco24I | GRGCYC | 1 cut(s) | 720 |
| Eco47I | GGWCC | 1 cut(s) | 274 |
| Eco52I | CGGCCG | 1 cut(s) | 340 |
| Eco53kI | GAGCTC | 1 cut(s) | 718 |
| Eco57I | CTGAAG | 2 cut(s) | 192, 480 |
| EcoICRI | GAGCTC | 1 cut(s) | 718 |
| EcoO109I | RGGNCCY | 1 cut(s) | 274 |
| EcoRI | GAATTC | 1 cut(s) | 585 |
| EcoRII | CCWGG | 1 cut(s) | 395 |
| EcoT38I | GRGCYC | 1 cut(s) | 720 |
| Esp3I | CGTCTC | 1 cut(s) | 172 |
| FaiI | YATR | 8 cut(s) | 22, 124, 126, 451, 552, 561, 620, 622 |
| FaqI | GGGAC | 1 cut(s) | 459 |
| FblI | GTMKAC | 1 cut(s) | 708 |
| FokI | GGATG | 4 cut(s) | 63, 317, 323, 768 |
| FriOI | GRGCYC | 1 cut(s) | 720 |
| FspBI | CTAG | 3 cut(s) | 132, 242, 249 |
| GsaI | CCCAGC | 1 cut(s) | 738 |
| GsuI | CTGGAG | 1 cut(s) | 620 |
| HaeIII | GGCC | 2 cut(s) | 325, 342 |
| HapII | CCGG | 1 cut(s) | 343 |
| HinfI | GANTC | 1 cut(s) | 167 |
| HpaII | CCGG | 1 cut(s) | 343 |
| HphI | GGTGA | 1 cut(s) | 633 |
| Hpy166II | GTNNAC | 1 cut(s) | 709 |
| Hpy188I | TCNGA | 4 cut(s) | 95, 172, 282, 499 |
| Hpy188III | TCNNGA | 6 cut(s) | 117, 317, 385, 752, 774, 795 |
| Hpy8I | GTNNAC | 1 cut(s) | 709 |
| Hpy99I | CGWCG | 5 cut(s) | 422, 425, 428, 431, 443 |
| HpyAV | CCTTC | 3 cut(s) | 287, 598, 648 |
| HpyCH4III | ACNGT | 1 cut(s) | 514 |
| HpyCH4IV | ACGT | 1 cut(s) | 181 |
| HpyCH4V | TGCA | 3 cut(s) | 271, 630, 656 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 662 |
| HpyF3I | CTNAG | 4 cut(s) | 11, 672, 714, 729 |
| HpySE526I | ACGT | 1 cut(s) | 181 |
| Kzo9I | GATC | 2 cut(s) | 198, 313 |
| LmnI | GCTCC | 3 cut(s) | 21, 238, 258 |
| LweI | GCATC | 3 cut(s) | 85, 322, 652 |
| MaeI | CTAG | 3 cut(s) | 132, 242, 249 |
| MaeII | ACGT | 1 cut(s) | 181 |
| MaeIII | GTNAC | 3 cut(s) | 434, 487, 667 |
| MalI | GATC | 2 cut(s) | 200, 315 |
| MboI | GATC | 2 cut(s) | 198, 313 |
| MboII | GAAGA | 8 cut(s) | 19, 45, 185, 412, 415, 518, 715, 751 |
| MfeI | CAATTG | 1 cut(s) | 657 |
| MhlI | GDGCHC | 1 cut(s) | 720 |
| MluCI | AATT | 8 cut(s) | 361, 444, 463, 585, 615, 625, 657, 763 |
| MlyI | GAGTC | 1 cut(s) | 161 |
| MmeI | TCCRAC | 1 cut(s) | 336 |
| MnlI | CCTC | 7 cut(s) | 6, 103, 139, 226, 229, 301, 303 |
| MroXI | GAANNNNTTC | 1 cut(s) | 585 |
| MslI | CAYNNNNRTG | 1 cut(s) | 646 |
| MspI | CCGG | 1 cut(s) | 343 |
| MspR9I | CCNGG | 2 cut(s) | 344, 397 |
| MunI | CAATTG | 1 cut(s) | 657 |
| MvaI | CCWGG | 1 cut(s) | 397 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 662 |
| NciI | CCSGG | 1 cut(s) | 344 |
| NdeII | GATC | 2 cut(s) | 198, 313 |
| NlaIV | GGNNCC | 1 cut(s) | 17 |
| NmuCI | GTSAC | 1 cut(s) | 434 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 423, 426, 435 |
| PdmI | GAANNNNTTC | 1 cut(s) | 585 |
| PleI | GAGTC | 1 cut(s) | 161 |
| PpsI | GAGTC | 1 cut(s) | 161 |
| PpuMI | RGGWCCY | 1 cut(s) | 274 |
| Psp124BI | GAGCTC | 1 cut(s) | 720 |
| Psp5II | RGGWCCY | 1 cut(s) | 274 |
| Psp6I | CCWGG | 1 cut(s) | 395 |
| PspFI | CCCAGC | 1 cut(s) | 734 |
| PspGI | CCWGG | 1 cut(s) | 395 |
| PspN4I | GGNNCC | 1 cut(s) | 17 |
| PspPI | GGNCC | 1 cut(s) | 274 |
| PspPPI | RGGWCCY | 1 cut(s) | 274 |
| RsaI | GTAC | 1 cut(s) | 612 |
| RsaNI | GTAC | 1 cut(s) | 611 |
| RseI | CAYNNNNRTG | 1 cut(s) | 646 |
| SacI | GAGCTC | 1 cut(s) | 720 |
| Sau3AI | GATC | 2 cut(s) | 198, 313 |
| Sau96I | GGNCC | 1 cut(s) | 274 |
| SchI | GAGTC | 1 cut(s) | 161 |
| ScrFI | CCNGG | 2 cut(s) | 344, 397 |
| SduI | GDGCHC | 1 cut(s) | 720 |
| SetI | ASST | 8 cut(s) | 114, 142, 184, 243, 279, 640, 720, 763 |
| SfaNI | GCATC | 3 cut(s) | 85, 322, 652 |
| SinI | GGWCC | 1 cut(s) | 274 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 646 |
| Sse9I | AATT | 8 cut(s) | 361, 444, 463, 585, 615, 625, 657, 763 |
| SsiI | CCGC | 1 cut(s) | 785 |
| SspMI | CTAG | 3 cut(s) | 132, 242, 249 |
| SstI | GAGCTC | 1 cut(s) | 720 |
| StyD4I | CCNGG | 2 cut(s) | 342, 395 |
| TaaI | ACNGT | 1 cut(s) | 514 |
| TaiI | ACGT | 1 cut(s) | 184 |
| TasI | AATT | 8 cut(s) | 361, 444, 463, 585, 615, 625, 657, 763 |
| TatI | WGTACW | 1 cut(s) | 610 |
| TscAI | CASTG | 1 cut(s) | 598 |
| TseFI | GTSAC | 1 cut(s) | 434 |
| Tsp45I | GTSAC | 1 cut(s) | 434 |
| TspDTI | ATGAA | 4 cut(s) | 45, 594, 757, 779 |
| TspGWI | ACGGA | 1 cut(s) | 69 |
| TspRI | CASTG | 1 cut(s) | 598 |
| VpaK11BI | GGWCC | 1 cut(s) | 274 |
| XapI | RAATTY | 1 cut(s) | 585 |
| XmiI | GTMKAC | 1 cut(s) | 708 |
| XmnI | GAANNNNTTC | 1 cut(s) | 585 |
| XspI | CTAG | 3 cut(s) | 132, 242, 249 |