Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007316

Physical Location & Seq

Genomic Coordinates Forward (+)

217890 .. 219242

Gene Structure 1353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015617

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCTGTGCAACATGCTATGAGGCTCCCATATCTCTTCTCCTCATCAACACACAACAAATTTGTAGCACCCATTTCGTTGATTAGTCGTCAAGGGCATCAATTCAGCACAAAAAGAAGAGAGGTTACTAGATTGTATGCCTCTAGTTCAGGCGACAAAAGCGACCCCTATTTGATGGATTCTGATGAGAGACTTGAATGGAGAGAGAAAATTAGACAAGTGTTGGACAAAAACCCGGATGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGCTAGACCCTACTGATAGGACCAGGAAAGTGCAGGACCTTCTGGCCAACTATCCTCTCGTTGTGGATGAGGATGATCCTGAATGGCCTGATGATGCCGACGGCCGCGGTTTCAAGTTGGATCAATTCTTTGACAAGATTACTATCAACAACACTCCAAGGAAGGATGACGACGATGATAGTGACAATGAACTAGTATGGCAAGATGATAATTATATACGCCCCATCAAAGATATAACCACTGCTGAATGGGAAGAGACCGTTTTCAAGGACATTAGCCCTTTGGTCATTCTTGTACATAATCGCTATAAAAGACCAAAAGAGAATGAAAAAATTCGGACTGAACTGGAGAAGGCTGTACAAATTATATGGAATTGCAGGCTACCTTCACCAAGATGTATTGCAATTGATGCTGTTACTGAGCATGACTTGGTTTCTGCTCTCCAAGTGTCTGTCTACCCCGAGATCATCTTCACCAAGGCTGGGAAGATCTTGTATCGTGAGAAAGCAATACGAAGCGGAGATCAGCTCTCAAAAGTAATGGCTTTCTTTTACTATGGAGCAGCCAAACCAGCTTGTTTGAATGGAATTGGTGATAGGCAGGAAGAAATTCCATCCATTCCTATCAATGCCCAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

303

Amino Acids

34.99

Weight (kDa)

4.8

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31840 AT2G31840
fragaria_vesca	FvH4_1g00130 FvH4_1g00130 FvH4_1g00130 FvH4_1g00130
malus_domestica	MD15G1142700.v1.1
prunus_persica	Prupe.7G270500_v2.0.a1 Prupe.7G270500_v2.0.a1
pyrus_communis	pycom15g12870
rosa_chinensis	RchiOBHm_Chr2g0084441
rosa_laevigata	RLG00000015617
rosa_multiflora	Rmu_sc0009404.1_g000006 Rmu_sc0025868.1_g000001
rosa_roxburghii	Rroxscaffold_2G00156080
rosa_rugosa	Rorug01G0453600 Rorug01G0453700 Rorug01G0453700 Rorug01G0453800 Rorug01G0453900
rosa_samantha	Rh2AG001900 Rh2BG001600 Rh2CG001800 Rh2DG002000
rosa_wichuraiana	Rw2G000160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	723
AccII	CGCG	1 cut(s)	375
AciI	CCGC	3 cut(s)	373, 375, 786
AclWI	GGATC	2 cut(s)	338, 396
AcoI	YGGCCR	2 cut(s)	312, 370
AcsI	RAATTY	3 cut(s)	59, 600, 876
AfaI	GTAC	2 cut(s)	564, 627
AfiI	CCNNNNNNNGG	2 cut(s)	241, 750
AgsI	TTSAA	4 cut(s)	197, 382, 535, 850
AhlI	ACTAGT	1 cut(s)	460
AjnI	CCWGG	1 cut(s)	290
AluBI	AGCT	3 cut(s)	271, 796, 842
AluI	AGCT	3 cut(s)	271, 796, 842
Alw26I	GTCTC	2 cut(s)	184, 518
AlwI	GGATC	2 cut(s)	338, 396
Ama87I	CYCGRG	1 cut(s)	728
AoxI	GGCC	3 cut(s)	312, 353, 370
ApeKI	GCWGC	1 cut(s)	830
ApoI	RAATTY	3 cut(s)	59, 600, 876
Asp700I	GAANNNNTTC	2 cut(s)	600, 876
AspS9I	GGNCC	2 cut(s)	288, 304
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	3 cut(s)	648, 733, 872
AvaI	CYCGRG	1 cut(s)	728
AvaII	GGWCC	2 cut(s)	288, 304
BalI	TGGCCA	1 cut(s)	314
BarI	GAAGNNNNNNTAC	2 cut(s)	109, 141
BbvI	GCAGC	1 cut(s)	842
BccI	CCATC	3 cut(s)	169, 500, 889
BceAI	ACGGC	1 cut(s)	385
BcgI	CGANNNNNNTGC	2 cut(s)	57, 91
BciT130I	CCWGG	1 cut(s)	292
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	2 cut(s)	184, 518
BcuI	ACTAGT	1 cut(s)	460
BfaI	CTAG	4 cut(s)	129, 144, 272, 461
BglII	AGATCT	1 cut(s)	756
BisI	GCNGC	2 cut(s)	373, 831
BlsI	GCNGC	2 cut(s)	374, 832
Bme1390I	CCNGG	2 cut(s)	236, 292
Bme18I	GGWCC	2 cut(s)	288, 304
BmeT110I	CYCGRG	1 cut(s)	728
BmgT120I	GGNCC	2 cut(s)	288, 304
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	2 cut(s)	236, 292
BmsI	GCATC	3 cut(s)	106, 352, 667
BplI	GAGNNNNNCTC	2 cut(s)	780, 812
BpmI	CTGGAG	1 cut(s)	635
BpuMI	CCSGG	1 cut(s)	236
BsaBI	GATNNNNATC	1 cut(s)	410
BsaI	GGTCTC	1 cut(s)	518
BsaJI	CCNNGG	3 cut(s)	373, 425, 744
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 750
Bse1I	ACTGG	1 cut(s)	618
Bse8I	GATNNNNATC	1 cut(s)	410
BseBI	CCWGG	1 cut(s)	292
BseDI	CCNNGG	3 cut(s)	373, 425, 744
BseGI	GGATG	5 cut(s)	244, 340, 346, 439, 881
BseJI	GATNNNNATC	1 cut(s)	410
BseLI	CCNNNNNNNGG	2 cut(s)	241, 750
BseMII	CTCAG	1 cut(s)	678
BseNI	ACTGG	1 cut(s)	618
BseRI	GAGGAG	9 cut(s)	31, 260, 263, 266, 269, 272, 275, 278, 281
BseX3I	CGGCCG	1 cut(s)	370
BseXI	GCAGC	1 cut(s)	842
BseYI	CCCAGC	1 cut(s)	749
BsgI	GTGCAG	1 cut(s)	320
Bsh1236I	CGCG	1 cut(s)	375
Bsh1285I	CGRYCG	1 cut(s)	373
BshFI	GGCC	3 cut(s)	314, 355, 372
BsiEI	CGRYCG	1 cut(s)	373
BsiHKCI	CYCGRG	1 cut(s)	728
BsiSI	CCGG	1 cut(s)	236
BslI	CCNNNNNNNGG	2 cut(s)	241, 750
BsmAI	GTCTC	2 cut(s)	184, 518
BsnI	GGCC	3 cut(s)	314, 355, 372
Bso31I	GGTCTC	1 cut(s)	518
BsoBI	CYCGRG	1 cut(s)	728
Bsp1407I	TGTACA	2 cut(s)	562, 625
Bsp143I	GATC	5 cut(s)	343, 388, 732, 756, 790
BspACI	CCGC	3 cut(s)	373, 375, 786
BspANI	GGCC	3 cut(s)	314, 355, 372
BspCNI	CTCAG	1 cut(s)	679
BspFNI	CGCG	1 cut(s)	375
BspLI	GGNNCC	1 cut(s)	26
BspPI	GGATC	2 cut(s)	338, 396
BspTNI	GGTCTC	1 cut(s)	518
BsrGI	TGTACA	2 cut(s)	562, 625
BsrI	ACTGG	1 cut(s)	618
BssECI	CCNNGG	3 cut(s)	373, 425, 744
BssMI	GATC	5 cut(s)	343, 388, 732, 756, 790
BssT1I	CCWWGG	2 cut(s)	425, 744
Bst2UI	CCWGG	1 cut(s)	292
Bst4CI	ACNGT	1 cut(s)	529
Bst6I	CTCTTC	3 cut(s)	41, 112, 516
BstAPI	GCANNNNNTGC	1 cut(s)	677
BstAUI	TGTACA	2 cut(s)	562, 625
BstC8I	GCNNGC	1 cut(s)	647
BstDEI	CTNAG	1 cut(s)	687
BstDSI	CCRYGG	1 cut(s)	373
BstF5I	GGATG	5 cut(s)	244, 340, 346, 439, 881
BstFNI	CGCG	1 cut(s)	375
BstKTI	GATC	5 cut(s)	346, 391, 735, 759, 793
BstMAI	GTCTC	2 cut(s)	184, 518
BstMBI	GATC	5 cut(s)	343, 388, 732, 756, 790
BstMCI	CGRYCG	1 cut(s)	373
BstMWI	GCNNNNNNNGC	3 cut(s)	159, 677, 839
BstNI	CCWGG	1 cut(s)	292
BstNSI	RCATGY	1 cut(s)	17
BstSCI	CCNGG	2 cut(s)	234, 290
BstUI	CGCG	1 cut(s)	375
BstV1I	GCAGC	1 cut(s)	842
BstX2I	RGATCY	1 cut(s)	756
BstYI	RGATCY	1 cut(s)	756
BstZI	CGGCCG	1 cut(s)	370
BsuRI	GGCC	3 cut(s)	314, 355, 372
BtgI	CCRYGG	1 cut(s)	373
BtsCI	GGATG	5 cut(s)	244, 340, 346, 439, 881
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	1 cut(s)	507
Cac8I	GCNNGC	1 cut(s)	647
Cfr13I	GGNCC	2 cut(s)	288, 304
Cfr42I	CCGCGG	1 cut(s)	376
Csp6I	GTAC	2 cut(s)	563, 626
CviAII	CATG	3 cut(s)	14, 692, 906
CviQI	GTAC	2 cut(s)	563, 626
DdeI	CTNAG	1 cut(s)	687
DpnI	GATC	5 cut(s)	345, 390, 734, 758, 792
DpnII	GATC	5 cut(s)	343, 388, 732, 756, 790
EaeI	YGGCCR	2 cut(s)	312, 370
EagI	CGGCCG	1 cut(s)	370
Eam1104I	CTCTTC	3 cut(s)	41, 112, 516
EarI	CTCTTC	3 cut(s)	41, 112, 516
EclXI	CGGCCG	1 cut(s)	370
Eco130I	CCWWGG	2 cut(s)	425, 744
Eco31I	GGTCTC	1 cut(s)	518
Eco47I	GGWCC	2 cut(s)	288, 304
Eco52I	CGGCCG	1 cut(s)	370
Eco88I	CYCGRG	1 cut(s)	728
EcoO109I	RGGNCCY	1 cut(s)	304
EcoRII	CCWGG	1 cut(s)	290
EcoT14I	CCWWGG	2 cut(s)	425, 744
ErhI	CCWWGG	2 cut(s)	425, 744
FaeI	CATG	3 cut(s)	17, 695, 909
FatI	CATG	3 cut(s)	13, 691, 905
FblI	GTMKAC	1 cut(s)	723
Fnu4HI	GCNGC	2 cut(s)	373, 831
FokI	GGATG	5 cut(s)	251, 347, 353, 446, 868
Fsp4HI	GCNGC	2 cut(s)	373, 831
FspBI	CTAG	4 cut(s)	129, 144, 272, 461
GluI	GCNGC	2 cut(s)	373, 831
GsaI	CCCAGC	1 cut(s)	753
GsuI	CTGGAG	1 cut(s)	635
HaeIII	GGCC	3 cut(s)	314, 355, 372
HapII	CCGG	1 cut(s)	236
Hin1II	CATG	3 cut(s)	17, 695, 909
HinfI	GANTC	1 cut(s)	179
HpaII	CCGG	1 cut(s)	236
HphI	GGTGA	3 cut(s)	648, 733, 872
Hpy166II	GTNNAC	1 cut(s)	724
Hpy188I	TCNGA	2 cut(s)	184, 606
Hpy188III	TCNNGA	2 cut(s)	347, 767
Hpy8I	GTNNAC	1 cut(s)	724
Hpy99I	CGWCG	2 cut(s)	371, 443
HpyAV	CCTTC	4 cut(s)	317, 424, 613, 663
HpyCH4III	ACNGT	1 cut(s)	529
HpyCH4V	TGCA	4 cut(s)	10, 301, 645, 671
HpyF10VI	GCNNNNNNNGC	3 cut(s)	159, 677, 839
HpyF3I	CTNAG	1 cut(s)	687
Hsp92II	CATG	3 cut(s)	17, 695, 909
KspI	CCGCGG	1 cut(s)	376
Kzo9I	GATC	5 cut(s)	343, 388, 732, 756, 790
LmnI	GCTCC	3 cut(s)	30, 268, 827
Lsp1109I	GCAGC	1 cut(s)	842
LweI	GCATC	3 cut(s)	106, 352, 667
MaeI	CTAG	4 cut(s)	129, 144, 272, 461
MaeIII	GTNAC	3 cut(s)	124, 449, 682
MalI	GATC	5 cut(s)	345, 390, 734, 758, 792
MboI	GATC	5 cut(s)	343, 388, 732, 756, 790
MboII	GAAGA	6 cut(s)	28, 129, 533, 730, 766, 884
MfeI	CAATTG	1 cut(s)	672
MflI	RGATCY	1 cut(s)	756
MlsI	TGGCCA	1 cut(s)	314
MluNI	TGGCCA	1 cut(s)	314
MmeI	TCCRAC	2 cut(s)	204, 366
Mox20I	TGGCCA	1 cut(s)	314
MroXI	GAANNNNTTC	2 cut(s)	600, 876
MscI	TGGCCA	1 cut(s)	314
MslI	CAYNNNNRTG	1 cut(s)	661
Msp20I	TGGCCA	1 cut(s)	314
MspA1I	CMGCKG	1 cut(s)	375
MspI	CCGG	1 cut(s)	236
MspR9I	CCNGG	2 cut(s)	236, 292
MunI	CAATTG	1 cut(s)	672
MvaI	CCWGG	1 cut(s)	292
MvnI	CGCG	1 cut(s)	375
MwoI	GCNNNNNNNGC	3 cut(s)	159, 677, 839
NciI	CCSGG	1 cut(s)	236
NdeII	GATC	5 cut(s)	343, 388, 732, 756, 790
NlaIII	CATG	3 cut(s)	17, 695, 909
NlaIV	GGNNCC	1 cut(s)	26
NmuCI	GTSAC	1 cut(s)	449
NspI	RCATGY	1 cut(s)	17
PdmI	GAANNNNTTC	2 cut(s)	600, 876
PfeI	GAWTC	1 cut(s)	179
PkrI	GCNGC	2 cut(s)	374, 832
PpuMI	RGGWCCY	1 cut(s)	304
Psp5II	RGGWCCY	1 cut(s)	304
Psp6I	CCWGG	1 cut(s)	290
PspFI	CCCAGC	1 cut(s)	749
PspGI	CCWGG	1 cut(s)	290
PspN4I	GGNNCC	1 cut(s)	26
PspPI	GGNCC	2 cut(s)	288, 304
PspPPI	RGGWCCY	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	756
RsaI	GTAC	2 cut(s)	564, 627
RsaNI	GTAC	2 cut(s)	563, 626
RseI	CAYNNNNRTG	1 cut(s)	661
SacII	CCGCGG	1 cut(s)	376
SatI	GCNGC	2 cut(s)	373, 831
Sau3AI	GATC	5 cut(s)	343, 388, 732, 756, 790
Sau96I	GGNCC	2 cut(s)	288, 304
ScrFI	CCNGG	2 cut(s)	236, 292
SetI	ASST	6 cut(s)	126, 273, 309, 655, 798, 844
SfaNI	GCATC	3 cut(s)	106, 352, 667
Sfr303I	CCGCGG	1 cut(s)	376
SgrBI	CCGCGG	1 cut(s)	376
SinI	GGWCC	2 cut(s)	288, 304
SmiMI	CAYNNNNRTG	1 cut(s)	661
SpeI	ACTAGT	1 cut(s)	460
SsiI	CCGC	3 cut(s)	373, 375, 786
SspMI	CTAG	4 cut(s)	129, 144, 272, 461
StyD4I	CCNGG	2 cut(s)	234, 290
StyI	CCWWGG	2 cut(s)	425, 744
TaaI	ACNGT	1 cut(s)	529
TatI	WGTACW	2 cut(s)	562, 625
TauI	GCSGC	1 cut(s)	375
TfiI	GAWTC	1 cut(s)	179
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	1 cut(s)	830
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	2 cut(s)	471, 609
TspRI	CASTG	1 cut(s)	514
VpaK11BI	GGWCC	2 cut(s)	288, 304
XapI	RAATTY	3 cut(s)	59, 600, 876
XceI	RCATGY	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	723
XmnI	GAANNNNTTC	2 cut(s)	600, 876
XspI	CTAG	4 cut(s)	129, 144, 272, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.