Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007316

Physical Location & Seq

Genomic Coordinates Reverse (-)

54836712 .. 54838715

Gene Structure 2004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0453700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGAGACTCTGTACTTTCTTAAGTTCTGGAAACCCAATCCTTCTCCCATTGCAATTCCCAGTCCTTTGGTAGAAACAGACAATGAATTTGAGGTGGAAGAGGAGGAAGAAGAAGACTCGTTCTTCGATTTGGAGATTAGTACAGAATCAAACACCAAAACCCATGAAGAAAGTTCCAAGCTTTACTCAAAAGAAGCCAAAACAGAACCAACCCTTTCTGTTCCTCCTCCTCCTTCTGATCCAATTTCCAAAAGGAAAATCCTCCCAATTGAACCCATTTCCAAGCCTCAGTCTCCCATTGCTCTACTCAAATCAGCTCCAAAGTTTGGGGTTTCGATTTTCAAAAAACCCAAATCAGCTTCAACTAAGAAAACAGAGAAAACAGGGGAAACAGAGTCCAGCATTTTGATGGAGACCCAGAAGCAGAAAAAGCCAGAAGCCAAAGGCAATGAAGCTTCAAGCCCTTCTAAGCTGACCAGGGAAAACAGTTCGAGAAAAACTGGAAGGATATTGCAGAGCCAGAGCTCCGATGATTCGAAAACAGAGCGGTTTTCAAAGGATGTGATAAACAAGTACCTGAAGCTAATCAAGCCTCTGTACTTGAAAGTTTCCAAGAGGTACGGTGACAAGGTGAAGGTTTCCGGCGACTTGCCGATGGCATCGCCGACGTCGTCGCCGGCGGTGTCTATGTACTCCCCGAGGAAGGAGAGGCAGGGGAATATTCCTGCCGGGATTCGAGTTGTTTGTAAGCATCTTGGGAAGAGCAAGTCGGCCACGGTGGCGATGGCGGTGGCGCCGCCGGTGAACCGGAGAGACGACTCGCTGTTGCTTCAAGCAGATGGGATTCAGAGCGCCATTCTGCATTGCAAGAGATCATTCAATTCTAGAGATTCTTCTTGCCTATCAAGATCAACAAGTTGGACTAGTTCGTCCATGAACTCATATTCTAGTGATTCTTCTATGCTATCACGGTTTGCGATCGAATCCCATGAGAGATCTGCGAGAAGCTCCATAGAGGAAGAGCTAGCATGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

345

Amino Acids

38.26

Weight (kDa)

9.16

Isoelectric Point (pI)

77.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31840 AT2G31840
fragaria_vesca	FvH4_1g00130 FvH4_1g00130 FvH4_1g00130 FvH4_1g00130
malus_domestica	MD15G1142700.v1.1
prunus_persica	Prupe.7G270500_v2.0.a1 Prupe.7G270500_v2.0.a1
pyrus_communis	pycom15g12870
rosa_chinensis	RchiOBHm_Chr2g0084441
rosa_laevigata	RLG00000015617
rosa_multiflora	Rmu_sc0009404.1_g000006 Rmu_sc0025868.1_g000001
rosa_roxburghii	Rroxscaffold_2G00156080
rosa_rugosa	Rorug01G0453600 Rorug01G0453700 Rorug01G0453700 Rorug01G0453800 Rorug01G0453900
rosa_samantha	Rh2AG001900 Rh2BG001600 Rh2CG001800 Rh2DG002000
rosa_wichuraiana	Rw2G000160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	928
AatII	GACGTC	1 cut(s)	671
AccB1I	GGYRCC	1 cut(s)	793
AccB7I	CCANNNNNTGG	1 cut(s)	326
AccBSI	CCGCTC	1 cut(s)	547
AciI	CCGC	4 cut(s)	547, 680, 788, 797
AclWI	GGATC	1 cut(s)	233
AcoI	YGGCCR	1 cut(s)	771
AcsI	RAATTY	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	599
AcyI	GRCGYC	2 cut(s)	668, 794
AfaI	GTAC	6 cut(s)	14, 142, 575, 599, 620, 692
AfiI	CCNNNNNNNGG	2 cut(s)	326, 703
AflII	CTTAAG	1 cut(s)	20
AgsI	TTSAA	8 cut(s)	272, 343, 363, 459, 555, 604, 833, 880
AhlI	ACTAGT	1 cut(s)	923
AjnI	CCWGG	1 cut(s)	476
AluBI	AGCT	9 cut(s)	181, 317, 359, 455, 472, 525, 583, 1008, 1024
AluI	AGCT	9 cut(s)	181, 317, 359, 455, 472, 525, 583, 1008, 1024
Alw21I	GWGCWC	1 cut(s)	527
Alw26I	GTCTC	3 cut(s)	297, 407, 807
AlwI	GGATC	1 cut(s)	233
Ama87I	CYCGRG	1 cut(s)	697
AoxI	GGCC	1 cut(s)	771
ApoI	RAATTY	1 cut(s)	86
ArsI	GACNNNNNNTTYG	4 cut(s)	71, 103, 107, 139
AspLEI	GCGC	2 cut(s)	796, 854
AsuC2I	CCSGG	1 cut(s)	730
AsuHPI	GGTGA	3 cut(s)	635, 643, 814
AsuII	TTCGAA	1 cut(s)	536
AsuNHI	GCTAGC	1 cut(s)	1024
AvaI	CYCGRG	1 cut(s)	697
BanI	GGYRCC	1 cut(s)	793
BanII	GRGCYC	1 cut(s)	527
BbsI	GAAGAC	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	527
BccI	CCATC	4 cut(s)	403, 649, 778, 833
BciT130I	CCWGG	1 cut(s)	478
BcnI	CCSGG	1 cut(s)	730
BcoDI	GTCTC	3 cut(s)	297, 407, 807
BcuI	ACTAGT	1 cut(s)	923
BfaI	CTAG	4 cut(s)	885, 924, 948, 1025
BfoI	RGCGCY	2 cut(s)	797, 855
BfrI	CTTAAG	1 cut(s)	20
BglI	GCCNNNNNGGC	1 cut(s)	779
BglII	AGATCT	1 cut(s)	995
BisI	GCNGC	1 cut(s)	797
BlsI	GCNGC	1 cut(s)	798
Bme1390I	CCNGG	2 cut(s)	478, 730
BmeT110I	CYCGRG	1 cut(s)	697
BmiI	GGNNCC	1 cut(s)	795
BmrFI	CCNGG	2 cut(s)	478, 730
BmrI	ACTGGG	1 cut(s)	54
BmsI	GCATC	2 cut(s)	668, 760
BmtI	GCTAGC	1 cut(s)	1028
BmuI	ACTGGG	1 cut(s)	54
BpiI	GAAGAC	1 cut(s)	120
Bpu14I	TTCGAA	1 cut(s)	536
BpuMI	CCSGG	1 cut(s)	730
BsaHI	GRCGYC	2 cut(s)	668, 794
BsaI	GGTCTC	1 cut(s)	407
BsaJI	CCNNGG	3 cut(s)	477, 698, 774
BsaWI	WCCGGW	1 cut(s)	807
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 703
Bse118I	RCCGGY	2 cut(s)	676, 799
Bse1I	ACTGG	2 cut(s)	60, 505
Bse3DI	GCAATG	4 cut(s)	48, 297, 454, 862
BseBI	CCWGG	1 cut(s)	478
BseDI	CCNNGG	3 cut(s)	477, 698, 774
BseGI	GGATG	1 cut(s)	565
BseLI	CCNNNNNNNGG	2 cut(s)	326, 703
BseMI	GCAATG	4 cut(s)	48, 297, 454, 862
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	2 cut(s)	60, 505
BseRI	GAGGAG	3 cut(s)	116, 216, 219
Bsh1285I	CGRYCG	1 cut(s)	981
BshFI	GGCC	1 cut(s)	773
BshNI	GGYRCC	1 cut(s)	793
BsiEI	CGRYCG	1 cut(s)	981
BsiHKAI	GWGCWC	1 cut(s)	527
BsiHKCI	CYCGRG	1 cut(s)	697
BsiSI	CCGG	5 cut(s)	642, 677, 729, 800, 808
BslI	CCNNNNNNNGG	2 cut(s)	326, 703
BsmAI	GTCTC	3 cut(s)	297, 407, 807
BsmBI	CGTCTC	1 cut(s)	807
BsnI	GGCC	1 cut(s)	773
Bso31I	GGTCTC	1 cut(s)	407
BsoBI	CYCGRG	1 cut(s)	697
Bsp119I	TTCGAA	1 cut(s)	536
Bsp1286I	GDGCHC	1 cut(s)	527
Bsp143I	GATC	5 cut(s)	238, 872, 908, 978, 995
BspACI	CCGC	4 cut(s)	547, 680, 788, 797
BspANI	GGCC	1 cut(s)	773
BspCNI	CTCAG	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	795
BspOI	GCTAGC	1 cut(s)	1028
BspPI	GGATC	1 cut(s)	233
BspQI	GCTCTTC	2 cut(s)	755, 1014
BspT104I	TTCGAA	1 cut(s)	536
BspT107I	GGYRCC	1 cut(s)	793
BspTI	CTTAAG	1 cut(s)	20
BspTNI	GGTCTC	1 cut(s)	407
BsrBI	CCGCTC	1 cut(s)	547
BsrDI	GCAATG	4 cut(s)	48, 297, 454, 862
BsrFI	RCCGGY	2 cut(s)	676, 799
BsrI	ACTGG	2 cut(s)	60, 505
BssAI	RCCGGY	2 cut(s)	676, 799
BssECI	CCNNGG	3 cut(s)	477, 698, 774
BssMI	GATC	5 cut(s)	238, 872, 908, 978, 995
BssNI	GRCGYC	2 cut(s)	668, 794
Bst2UI	CCWGG	1 cut(s)	478
Bst4CI	ACNGT	4 cut(s)	488, 623, 778, 972
Bst6I	CTCTTC	3 cut(s)	93, 755, 1014
BstACI	GRCGYC	2 cut(s)	668, 794
BstAFI	CTTAAG	1 cut(s)	20
BstBI	TTCGAA	1 cut(s)	536
BstC8I	GCNNGC	3 cut(s)	678, 1026, 1030
BstDEI	CTNAG	3 cut(s)	288, 366, 468
BstDSI	CCRYGG	1 cut(s)	774
BstF5I	GGATG	1 cut(s)	565
BstH2I	RGCGCY	2 cut(s)	797, 855
BstHHI	GCGC	2 cut(s)	796, 854
BstKTI	GATC	5 cut(s)	241, 875, 911, 981, 998
BstMAI	GTCTC	3 cut(s)	297, 407, 807
BstMBI	GATC	5 cut(s)	238, 872, 908, 978, 995
BstMCI	CGRYCG	1 cut(s)	981
BstMWI	GCNNNNNNNGC	3 cut(s)	430, 589, 779
BstNI	CCWGG	1 cut(s)	478
BstNSI	RCATGY	1 cut(s)	1032
BstSCI	CCNGG	2 cut(s)	476, 728
BstV2I	GAAGAC	1 cut(s)	120
BstX2I	RGATCY	1 cut(s)	995
BstXI	CCANNNNNNTGG	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	995
BsuRI	GGCC	1 cut(s)	773
BtgI	CCRYGG	1 cut(s)	774
BtgZI	GCGATG	2 cut(s)	645, 797
BtsCI	GGATG	1 cut(s)	565
Cac8I	GCNNGC	3 cut(s)	678, 1026, 1030
CfoI	GCGC	2 cut(s)	796, 854
Cfr10I	RCCGGY	2 cut(s)	676, 799
Csp6I	GTAC	6 cut(s)	13, 141, 574, 598, 619, 691
CviAII	CATG	4 cut(s)	164, 934, 989, 1029
CviQI	GTAC	6 cut(s)	13, 141, 574, 598, 619, 691
DdeI	CTNAG	3 cut(s)	288, 366, 468
DinI	GGCGCC	1 cut(s)	795
DpnI	GATC	5 cut(s)	240, 874, 910, 980, 997
DpnII	GATC	5 cut(s)	238, 872, 908, 978, 995
DrdI	GACNNNNNNGTC	1 cut(s)	928
DseDI	GACNNNNNNGTC	1 cut(s)	928
EaeI	YGGCCR	1 cut(s)	771
Eam1104I	CTCTTC	3 cut(s)	93, 755, 1014
EarI	CTCTTC	3 cut(s)	93, 755, 1014
Ecl136II	GAGCTC	1 cut(s)	525
Eco24I	GRGCYC	1 cut(s)	527
Eco31I	GGTCTC	1 cut(s)	407
Eco53kI	GAGCTC	1 cut(s)	525
Eco57I	CTGAAG	1 cut(s)	599
Eco88I	CYCGRG	1 cut(s)	697
EcoICRI	GAGCTC	1 cut(s)	525
EcoRII	CCWGG	1 cut(s)	476
EcoT38I	GRGCYC	1 cut(s)	527
EgeI	GGCGCC	1 cut(s)	795
EheI	GGCGCC	1 cut(s)	795
Esp3I	CGTCTC	1 cut(s)	807
FaeI	CATG	4 cut(s)	167, 937, 992, 1032
FaiI	YATR	8 cut(s)	165, 689, 935, 943, 962, 990, 1013, 1030
FatI	CATG	4 cut(s)	163, 933, 988, 1028
Fnu4HI	GCNGC	1 cut(s)	797
FokI	GGATG	1 cut(s)	572
FriOI	GRGCYC	1 cut(s)	527
Fsp4HI	GCNGC	1 cut(s)	797
FspBI	CTAG	4 cut(s)	885, 924, 948, 1025
GlaI	GCGC	2 cut(s)	795, 853
GluI	GCNGC	1 cut(s)	797
HaeII	RGCGCY	2 cut(s)	797, 855
HaeIII	GGCC	1 cut(s)	773
HapII	CCGG	5 cut(s)	642, 677, 729, 800, 808
HhaI	GCGC	2 cut(s)	796, 854
Hin1I	GRCGYC	2 cut(s)	668, 794
Hin1II	CATG	4 cut(s)	167, 937, 992, 1032
Hin6I	GCGC	2 cut(s)	794, 852
HinP1I	GCGC	2 cut(s)	794, 852
HindIII	AAGCTT	2 cut(s)	179, 453
HpaII	CCGG	5 cut(s)	642, 677, 729, 800, 808
HphI	GGTGA	3 cut(s)	635, 643, 814
Hpy166II	GTNNAC	1 cut(s)	805
Hpy188I	TCNGA	4 cut(s)	238, 529, 849, 1037
Hpy188III	TCNNGA	4 cut(s)	28, 492, 885, 906
Hpy8I	GTNNAC	1 cut(s)	805
Hpy99I	CGWCG	3 cut(s)	670, 673, 676
HpyAV	CCTTC	6 cut(s)	51, 243, 474, 498, 628, 697
HpyCH4III	ACNGT	4 cut(s)	488, 623, 778, 972
HpyCH4IV	ACGT	1 cut(s)	668
HpyCH4V	TGCA	4 cut(s)	53, 514, 862, 867
HpyF10VI	GCNNNNNNNGC	3 cut(s)	430, 589, 779
HpyF3I	CTNAG	3 cut(s)	288, 366, 468
HpySE526I	ACGT	1 cut(s)	668
Hsp92I	GRCGYC	2 cut(s)	668, 794
Hsp92II	CATG	4 cut(s)	167, 937, 992, 1032
HspAI	GCGC	2 cut(s)	794, 852
KasI	GGCGCC	1 cut(s)	793
KroI	GCCGGC	1 cut(s)	676
KroNI	GCCGGC	1 cut(s)	678
Kzo9I	GATC	5 cut(s)	238, 872, 908, 978, 995
LguI	GCTCTTC	2 cut(s)	755, 1014
LmnI	GCTCC	3 cut(s)	322, 530, 1013
LweI	GCATC	2 cut(s)	668, 760
MaeI	CTAG	4 cut(s)	885, 924, 948, 1025
MaeII	ACGT	1 cut(s)	668
MaeIII	GTNAC	1 cut(s)	623
MalI	GATC	5 cut(s)	240, 874, 910, 980, 997
MbiI	CCGCTC	1 cut(s)	547
MboI	GATC	5 cut(s)	238, 872, 908, 978, 995
MfeI	CAATTG	1 cut(s)	267
MflI	RGATCY	1 cut(s)	995
MhlI	GDGCHC	1 cut(s)	527
MluCI	AATT	5 cut(s)	54, 86, 243, 267, 880
Mly113I	GGCGCC	1 cut(s)	794
MlyI	GAGTC	3 cut(s)	110, 404, 812
MmeI	TCCRAC	1 cut(s)	899
MreI	CGCCGGCG	1 cut(s)	676
MroNI	GCCGGC	1 cut(s)	676
MseI	TTAA	1 cut(s)	21
MslI	CAYNNNNRTG	1 cut(s)	407
MspCI	CTTAAG	1 cut(s)	20
MspI	CCGG	5 cut(s)	642, 677, 729, 800, 808
MspR9I	CCNGG	2 cut(s)	478, 730
MunI	CAATTG	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	478
MwoI	GCNNNNNNNGC	3 cut(s)	430, 589, 779
NaeI	GCCGGC	1 cut(s)	678
NarI	GGCGCC	1 cut(s)	794
NciI	CCSGG	1 cut(s)	730
NdeII	GATC	5 cut(s)	238, 872, 908, 978, 995
NgoMIV	GCCGGC	1 cut(s)	676
NheI	GCTAGC	1 cut(s)	1024
NlaIII	CATG	4 cut(s)	167, 937, 992, 1032
NlaIV	GGNNCC	1 cut(s)	795
NmuCI	GTSAC	1 cut(s)	623
NspI	RCATGY	1 cut(s)	1032
NspV	TTCGAA	1 cut(s)	536
PaeI	GCATGC	1 cut(s)	1032
PciSI	GCTCTTC	2 cut(s)	755, 1014
PcsI	WCGNNNNNNNCGW	1 cut(s)	668
PdiI	GCCGGC	1 cut(s)	678
PfeI	GAWTC	7 cut(s)	146, 533, 733, 844, 890, 953, 983
PflFI	GACNNNGTC	1 cut(s)	670
PflMI	CCANNNNNTGG	1 cut(s)	326
PkrI	GCNGC	1 cut(s)	798
Ple19I	CGATCG	1 cut(s)	981
PleI	GAGTC	3 cut(s)	110, 403, 812
PluTI	GGCGCC	1 cut(s)	797
PpsI	GAGTC	3 cut(s)	110, 403, 812
Psp124BI	GAGCTC	1 cut(s)	527
Psp6I	CCWGG	1 cut(s)	476
PspGI	CCWGG	1 cut(s)	476
PspN4I	GGNNCC	1 cut(s)	795
PsuI	RGATCY	1 cut(s)	995
PsyI	GACNNNGTC	1 cut(s)	670
PvuI	CGATCG	1 cut(s)	981
RsaI	GTAC	6 cut(s)	14, 142, 575, 599, 620, 692
RsaNI	GTAC	6 cut(s)	13, 141, 574, 598, 619, 691
RseI	CAYNNNNRTG	1 cut(s)	407
SacI	GAGCTC	1 cut(s)	527
SapI	GCTCTTC	2 cut(s)	755, 1014
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	1 cut(s)	797
Sau3AI	GATC	5 cut(s)	238, 872, 908, 978, 995
SchI	GAGTC	3 cut(s)	110, 404, 812
ScrFI	CCNGG	2 cut(s)	478, 730
SduI	GDGCHC	1 cut(s)	527
SfaNI	GCATC	2 cut(s)	668, 760
SfoI	GGCGCC	1 cut(s)	795
SfuI	TTCGAA	1 cut(s)	536
SgrAI	CRCCGGYG	2 cut(s)	676, 799
SmiMI	CAYNNNNRTG	1 cut(s)	407
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
SpeI	ACTAGT	1 cut(s)	923
SphI	GCATGC	1 cut(s)	1032
Sse9I	AATT	5 cut(s)	54, 86, 243, 267, 880
SsiI	CCGC	4 cut(s)	547, 680, 788, 797
SspDI	GGCGCC	1 cut(s)	793
SspI	AATATT	1 cut(s)	721
SspMI	CTAG	4 cut(s)	885, 924, 948, 1025
SstI	GAGCTC	1 cut(s)	527
StyD4I	CCNGG	2 cut(s)	476, 728
TaaI	ACNGT	4 cut(s)	488, 623, 778, 972
TaiI	ACGT	1 cut(s)	671
TaqI	TCGA	6 cut(s)	126, 335, 491, 536, 736, 981
TasI	AATT	5 cut(s)	54, 86, 243, 267, 880
TatI	WGTACW	4 cut(s)	12, 140, 597, 690
TauI	GCSGC	1 cut(s)	799
TfiI	GAWTC	7 cut(s)	146, 533, 733, 844, 890, 953, 983
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TseFI	GTSAC	1 cut(s)	623
Tsp45I	GTSAC	1 cut(s)	623
TspDTI	ATGAA	4 cut(s)	99, 180, 465, 950
Tth111I	GACNNNGTC	1 cut(s)	670
Van91I	CCANNNNNTGG	1 cut(s)	326
Vha464I	CTTAAG	1 cut(s)	20
XapI	RAATTY	1 cut(s)	86
XbaI	TCTAGA	1 cut(s)	884
XceI	RCATGY	1 cut(s)	1032
XcmI	CCANNNNNNNNNTGG	2 cut(s)	406, 781
XspI	CTAG	4 cut(s)	885, 924, 948, 1025
ZraI	GACGTC	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.