Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0007316

Physical Location & Seq

Genomic Coordinates Forward (+)

173845 .. 175131

Gene Structure 1287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G000160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCTCTGCAACATGCTATGCGGCTCCCATATCTCTTCTCCTCATCAACAAACAACAAACCCATTTCGTTGATTAGTCGTCTAGGGCATCAATTCAGGGCAGTCAGCACAAAAAGAAGATTGTATGCCTCCAGTTCAGGCGACCCCTATTTGATGGATTCTGATGAGAGACTTGAATGGAGAGAGAAAATTAGACAAGTGTTGGATAAAAACCCGGATGTGGAGGAGGAGGAGGAGCTAGACCCTACTGATAGGACCAGGAAAGTGCAGGACCTTCTGGCCAACTATCCTCTCGTTGTGGATGAGGATGATCCTGAATGGCCTGATGATGCCGACGGCCGCGGTTTCAAGTTGGATCAATTCTTTGACAAGATTACTATCAACAACACTCCAAGGAAGGATGACAATGATGACGACGACGATAGTGACAATGAACTAGTATGGCAAGATGATAATTATATTCGTCCCATCAAAGATATAACAACTGCTGAATGGGAAGAGACCGTTTTCAAGGACATTAGCCCTTTGGTCATTCTTGTACATAATCGCTATAAAAGACCAAAAGAGAATGAAAAAATTCGGACTGAACTGGAGAAGGCTGTACAAATTATATGGAATTGCAGGCTACCTTCACCAAGATGTATTGCAATTGATGCTGTTACTGAGCATGACTTGGTTTCTGCTCTCCAAGTGTCTGTCTACCCCGAGATCATCTTCACCAAGGCTGGGAAGATCTTGTATCGTGACCAAGCAATACGAAGCGGAGATGAGCTCTCAAAAGTAATGGCTTTCTTTTACTATGGAGCAGCCAAACCAGCTTGTTTGAATGGAATTGGTGATAGGCAGGAAGAAATTCCATCCATTCCTATCAATGCCCAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

294

Amino Acids

33.97

Weight (kDa)

4.75

Isoelectric Point (pI)

40.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31840 AT2G31840
fragaria_vesca	FvH4_1g00130 FvH4_1g00130 FvH4_1g00130 FvH4_1g00130
malus_domestica	MD15G1142700.v1.1
prunus_persica	Prupe.7G270500_v2.0.a1 Prupe.7G270500_v2.0.a1
pyrus_communis	pycom15g12870
rosa_chinensis	RchiOBHm_Chr2g0084441
rosa_laevigata	RLG00000015617
rosa_multiflora	Rmu_sc0009404.1_g000006 Rmu_sc0025868.1_g000001
rosa_roxburghii	Rroxscaffold_2G00156080
rosa_rugosa	Rorug01G0453600 Rorug01G0453700 Rorug01G0453700 Rorug01G0453800 Rorug01G0453900
rosa_samantha	Rh2AG001900 Rh2BG001600 Rh2CG001800 Rh2DG002000
rosa_wichuraiana	Rw2G000160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	699
AccII	CGCG	1 cut(s)	342
AciI	CCGC	4 cut(s)	22, 340, 342, 762
AclWI	GGATC	2 cut(s)	305, 363
AcoI	YGGCCR	2 cut(s)	279, 337
AcsI	RAATTY	2 cut(s)	576, 852
AfaI	GTAC	2 cut(s)	540, 603
AfiI	CCNNNNNNNGG	2 cut(s)	220, 726
AgsI	TTSAA	4 cut(s)	176, 349, 511, 826
AhlI	ACTAGT	1 cut(s)	436
AjnI	CCWGG	1 cut(s)	257
AluBI	AGCT	3 cut(s)	238, 772, 818
AluI	AGCT	3 cut(s)	238, 772, 818
Alw21I	GWGCWC	1 cut(s)	774
Alw26I	GTCTC	2 cut(s)	163, 494
AlwI	GGATC	2 cut(s)	305, 363
Ama87I	CYCGRG	1 cut(s)	704
AoxI	GGCC	3 cut(s)	279, 320, 337
ApeKI	GCWGC	1 cut(s)	806
ApoI	RAATTY	2 cut(s)	576, 852
Asp700I	GAANNNNTTC	2 cut(s)	576, 852
AspS9I	GGNCC	2 cut(s)	255, 271
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	3 cut(s)	624, 709, 848
AvaI	CYCGRG	1 cut(s)	704
AvaII	GGWCC	2 cut(s)	255, 271
BalI	TGGCCA	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	774
Bbv12I	GWGCWC	1 cut(s)	774
BbvI	GCAGC	1 cut(s)	818
BccI	CCATC	3 cut(s)	148, 476, 865
BceAI	ACGGC	1 cut(s)	352
BciT130I	CCWGG	1 cut(s)	259
BcnI	CCSGG	1 cut(s)	215
BcoDI	GTCTC	2 cut(s)	163, 494
BcuI	ACTAGT	1 cut(s)	436
BfaI	CTAG	3 cut(s)	83, 239, 437
BglII	AGATCT	1 cut(s)	732
BisI	GCNGC	3 cut(s)	23, 340, 807
BlsI	GCNGC	3 cut(s)	24, 341, 808
Bme1390I	CCNGG	2 cut(s)	215, 259
Bme18I	GGWCC	2 cut(s)	255, 271
BmeT110I	CYCGRG	1 cut(s)	704
BmgT120I	GGNCC	2 cut(s)	255, 271
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	2 cut(s)	215, 259
BmsI	GCATC	3 cut(s)	97, 319, 643
BplI	GAGNNNNNCTC	2 cut(s)	756, 788
BpmI	CTGGAG	2 cut(s)	115, 611
BpuMI	CCSGG	1 cut(s)	215
BsaBI	GATNNNNATC	1 cut(s)	377
BsaI	GGTCTC	1 cut(s)	494
BsaJI	CCNNGG	3 cut(s)	340, 392, 720
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 726
Bse1I	ACTGG	2 cut(s)	132, 594
Bse8I	GATNNNNATC	1 cut(s)	377
BseBI	CCWGG	1 cut(s)	259
BseDI	CCNNGG	3 cut(s)	340, 392, 720
BseGI	GGATG	5 cut(s)	223, 307, 313, 406, 857
BseJI	GATNNNNATC	1 cut(s)	377
BseLI	CCNNNNNNNGG	2 cut(s)	220, 726
BseMII	CTCAG	1 cut(s)	654
BseNI	ACTGG	2 cut(s)	132, 594
BseRI	GAGGAG	5 cut(s)	31, 239, 242, 245, 248
BseX3I	CGGCCG	1 cut(s)	337
BseXI	GCAGC	1 cut(s)	818
BseYI	CCCAGC	1 cut(s)	725
BsgI	GTGCAG	1 cut(s)	287
Bsh1236I	CGCG	1 cut(s)	342
Bsh1285I	CGRYCG	1 cut(s)	340
BshFI	GGCC	3 cut(s)	281, 322, 339
BsiEI	CGRYCG	1 cut(s)	340
BsiHKAI	GWGCWC	1 cut(s)	774
BsiHKCI	CYCGRG	1 cut(s)	704
BsiSI	CCGG	1 cut(s)	215
BslFI	GGGAC	1 cut(s)	450
BslI	CCNNNNNNNGG	2 cut(s)	220, 726
BsmAI	GTCTC	2 cut(s)	163, 494
BsmFI	GGGAC	1 cut(s)	450
BsnI	GGCC	3 cut(s)	281, 322, 339
Bso31I	GGTCTC	1 cut(s)	494
BsoBI	CYCGRG	1 cut(s)	704
Bsp1286I	GDGCHC	1 cut(s)	774
Bsp1407I	TGTACA	2 cut(s)	538, 601
Bsp143I	GATC	4 cut(s)	310, 355, 708, 732
BspACI	CCGC	4 cut(s)	22, 340, 342, 762
BspANI	GGCC	3 cut(s)	281, 322, 339
BspCNI	CTCAG	1 cut(s)	655
BspFNI	CGCG	1 cut(s)	342
BspLI	GGNNCC	1 cut(s)	26
BspPI	GGATC	2 cut(s)	305, 363
BspTNI	GGTCTC	1 cut(s)	494
BsrGI	TGTACA	2 cut(s)	538, 601
BsrI	ACTGG	2 cut(s)	132, 594
BssECI	CCNNGG	3 cut(s)	340, 392, 720
BssMI	GATC	4 cut(s)	310, 355, 708, 732
BssT1I	CCWWGG	2 cut(s)	392, 720
Bst2UI	CCWGG	1 cut(s)	259
Bst4CI	ACNGT	1 cut(s)	505
Bst6I	CTCTTC	2 cut(s)	41, 492
BstAPI	GCANNNNNTGC	1 cut(s)	653
BstAUI	TGTACA	2 cut(s)	538, 601
BstC8I	GCNNGC	1 cut(s)	623
BstDEI	CTNAG	1 cut(s)	663
BstDSI	CCRYGG	1 cut(s)	340
BstF5I	GGATG	5 cut(s)	223, 307, 313, 406, 857
BstFNI	CGCG	1 cut(s)	342
BstKTI	GATC	4 cut(s)	313, 358, 711, 735
BstMAI	GTCTC	2 cut(s)	163, 494
BstMBI	GATC	4 cut(s)	310, 355, 708, 732
BstMCI	CGRYCG	1 cut(s)	340
BstMWI	GCNNNNNNNGC	2 cut(s)	653, 815
BstNI	CCWGG	1 cut(s)	259
BstNSI	RCATGY	1 cut(s)	17
BstSCI	CCNGG	2 cut(s)	213, 257
BstUI	CGCG	1 cut(s)	342
BstV1I	GCAGC	1 cut(s)	818
BstX2I	RGATCY	1 cut(s)	732
BstYI	RGATCY	1 cut(s)	732
BstZI	CGGCCG	1 cut(s)	337
BsuRI	GGCC	3 cut(s)	281, 322, 339
BtgI	CCRYGG	1 cut(s)	340
BtsCI	GGATG	5 cut(s)	223, 307, 313, 406, 857
Cac8I	GCNNGC	1 cut(s)	623
Cfr13I	GGNCC	2 cut(s)	255, 271
Cfr42I	CCGCGG	1 cut(s)	343
Csp6I	GTAC	2 cut(s)	539, 602
CviAII	CATG	3 cut(s)	14, 668, 882
CviQI	GTAC	2 cut(s)	539, 602
DdeI	CTNAG	1 cut(s)	663
DpnI	GATC	4 cut(s)	312, 357, 710, 734
DpnII	GATC	4 cut(s)	310, 355, 708, 732
EaeI	YGGCCR	2 cut(s)	279, 337
EagI	CGGCCG	1 cut(s)	337
Eam1104I	CTCTTC	2 cut(s)	41, 492
EarI	CTCTTC	2 cut(s)	41, 492
Ecl136II	GAGCTC	1 cut(s)	772
EclXI	CGGCCG	1 cut(s)	337
Eco130I	CCWWGG	2 cut(s)	392, 720
Eco24I	GRGCYC	1 cut(s)	774
Eco31I	GGTCTC	1 cut(s)	494
Eco47I	GGWCC	2 cut(s)	255, 271
Eco52I	CGGCCG	1 cut(s)	337
Eco53kI	GAGCTC	1 cut(s)	772
Eco88I	CYCGRG	1 cut(s)	704
EcoICRI	GAGCTC	1 cut(s)	772
EcoO109I	RGGNCCY	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	257
EcoT14I	CCWWGG	2 cut(s)	392, 720
EcoT38I	GRGCYC	1 cut(s)	774
ErhI	CCWWGG	2 cut(s)	392, 720
FaeI	CATG	3 cut(s)	17, 671, 885
FaqI	GGGAC	1 cut(s)	450
FatI	CATG	3 cut(s)	13, 667, 881
FblI	GTMKAC	1 cut(s)	699
Fnu4HI	GCNGC	3 cut(s)	23, 340, 807
FokI	GGATG	5 cut(s)	230, 314, 320, 413, 844
FriOI	GRGCYC	1 cut(s)	774
Fsp4HI	GCNGC	3 cut(s)	23, 340, 807
FspBI	CTAG	3 cut(s)	83, 239, 437
GluI	GCNGC	3 cut(s)	23, 340, 807
GsaI	CCCAGC	1 cut(s)	729
GsuI	CTGGAG	2 cut(s)	115, 611
HaeIII	GGCC	3 cut(s)	281, 322, 339
HapII	CCGG	1 cut(s)	215
Hin1II	CATG	3 cut(s)	17, 671, 885
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	3 cut(s)	624, 709, 848
Hpy166II	GTNNAC	1 cut(s)	700
Hpy188I	TCNGA	2 cut(s)	163, 582
Hpy188III	TCNNGA	2 cut(s)	314, 743
Hpy8I	GTNNAC	1 cut(s)	700
Hpy99I	CGWCG	3 cut(s)	338, 419, 422
HpyAV	CCTTC	4 cut(s)	284, 391, 589, 639
HpyCH4III	ACNGT	1 cut(s)	505
HpyCH4V	TGCA	4 cut(s)	10, 268, 621, 647
HpyF10VI	GCNNNNNNNGC	2 cut(s)	653, 815
HpyF3I	CTNAG	1 cut(s)	663
Hsp92II	CATG	3 cut(s)	17, 671, 885
KspI	CCGCGG	1 cut(s)	343
Kzo9I	GATC	4 cut(s)	310, 355, 708, 732
LmnI	GCTCC	3 cut(s)	30, 235, 803
Lsp1109I	GCAGC	1 cut(s)	818
LweI	GCATC	3 cut(s)	97, 319, 643
MaeI	CTAG	3 cut(s)	83, 239, 437
MaeIII	GTNAC	3 cut(s)	425, 658, 743
MalI	GATC	4 cut(s)	312, 357, 710, 734
MboI	GATC	4 cut(s)	310, 355, 708, 732
MboII	GAAGA	6 cut(s)	28, 129, 509, 706, 742, 860
MfeI	CAATTG	1 cut(s)	648
MflI	RGATCY	1 cut(s)	732
MhlI	GDGCHC	1 cut(s)	774
MlsI	TGGCCA	1 cut(s)	281
MluNI	TGGCCA	1 cut(s)	281
MmeI	TCCRAC	2 cut(s)	183, 333
MnlI	CCTC	8 cut(s)	52, 139, 217, 220, 223, 226, 298, 300
Mox20I	TGGCCA	1 cut(s)	281
MroXI	GAANNNNTTC	2 cut(s)	576, 852
MscI	TGGCCA	1 cut(s)	281
MslI	CAYNNNNRTG	1 cut(s)	637
Msp20I	TGGCCA	1 cut(s)	281
MspA1I	CMGCKG	1 cut(s)	342
MspI	CCGG	1 cut(s)	215
MspR9I	CCNGG	2 cut(s)	215, 259
MunI	CAATTG	1 cut(s)	648
MvaI	CCWGG	1 cut(s)	259
MvnI	CGCG	1 cut(s)	342
MwoI	GCNNNNNNNGC	2 cut(s)	653, 815
NciI	CCSGG	1 cut(s)	215
NdeII	GATC	4 cut(s)	310, 355, 708, 732
NlaIII	CATG	3 cut(s)	17, 671, 885
NlaIV	GGNNCC	1 cut(s)	26
NmuCI	GTSAC	2 cut(s)	425, 743
NspI	RCATGY	1 cut(s)	17
PdmI	GAANNNNTTC	2 cut(s)	576, 852
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	3 cut(s)	24, 341, 808
PpuMI	RGGWCCY	1 cut(s)	271
Psp124BI	GAGCTC	1 cut(s)	774
Psp5II	RGGWCCY	1 cut(s)	271
Psp6I	CCWGG	1 cut(s)	257
PspFI	CCCAGC	1 cut(s)	725
PspGI	CCWGG	1 cut(s)	257
PspN4I	GGNNCC	1 cut(s)	26
PspPI	GGNCC	2 cut(s)	255, 271
PspPPI	RGGWCCY	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	732
RsaI	GTAC	2 cut(s)	540, 603
RsaNI	GTAC	2 cut(s)	539, 602
RseI	CAYNNNNRTG	1 cut(s)	637
SacI	GAGCTC	1 cut(s)	774
SacII	CCGCGG	1 cut(s)	343
SatI	GCNGC	3 cut(s)	23, 340, 807
Sau3AI	GATC	4 cut(s)	310, 355, 708, 732
Sau96I	GGNCC	2 cut(s)	255, 271
ScrFI	CCNGG	2 cut(s)	215, 259
SduI	GDGCHC	1 cut(s)	774
SetI	ASST	5 cut(s)	240, 276, 631, 774, 820
SfaNI	GCATC	3 cut(s)	97, 319, 643
Sfr303I	CCGCGG	1 cut(s)	343
SgrBI	CCGCGG	1 cut(s)	343
SinI	GGWCC	2 cut(s)	255, 271
SmiMI	CAYNNNNRTG	1 cut(s)	637
SpeI	ACTAGT	1 cut(s)	436
SsiI	CCGC	4 cut(s)	22, 340, 342, 762
SspMI	CTAG	3 cut(s)	83, 239, 437
SstI	GAGCTC	1 cut(s)	774
StyD4I	CCNGG	2 cut(s)	213, 257
StyI	CCWWGG	2 cut(s)	392, 720
TaaI	ACNGT	1 cut(s)	505
TatI	WGTACW	2 cut(s)	538, 601
TauI	GCSGC	2 cut(s)	25, 342
TfiI	GAWTC	1 cut(s)	158
TseFI	GTSAC	2 cut(s)	425, 743
TseI	GCWGC	1 cut(s)	806
Tsp45I	GTSAC	2 cut(s)	425, 743
TspDTI	ATGAA	2 cut(s)	447, 585
VpaK11BI	GGWCC	2 cut(s)	255, 271
XapI	RAATTY	2 cut(s)	576, 852
XceI	RCATGY	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	699
XmnI	GAANNNNTTC	2 cut(s)	576, 852
XspI	CTAG	3 cut(s)	83, 239, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.