Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007316

Physical Location & Seq

Genomic Coordinates Forward (+)

186532 .. 187665

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG001900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGATTCTGATGAGAGACTTGAATGGAGAGAGAAAATTAGACAAGTGTTGGATAAAAACCCGGATGTGGAGGAGGAGGAGGAGCTAAACCCTACTGATAGGACCAGGAAAGTTCAGGACCTTCTGGCCAACTATCCTCTCGTTGTGGATGAGGATGATCCTGAATGGCCTGATGATGCCGACGGCCGCGGTTTCAAGTTGGATCAATTCTTTGACAAGATTACTATCAACAACACTCCAAGGAAGGATGACAATGATGACGACGATGATAGTGACAATGAACTAGTATGGCAAGATGATAATTATATTCGTCCCATCAAAGATATAACCACTGCTGAATGGGAAGAGACCGTTTTCAAGGACATTAGCCCTTTGGTCATTCTTGTACATAATCGCTATAAAAGACCAAAAGAGAATGAAAAAATTCGGACTGAACTGGAGAAGGCTGTACAAATTATATGGAATTGCAGGCTACCTTCACCAAGATGTATTGCAATTGATGCTGTTACTGAGCATGACTTGGTTTCTGCTCTCCAAGTGTCTGTCTACCCCGAGATCATCTTCACCAAGGCTGGGAAGATCTTGTATCGTGACAAAGCAATACGAAGCGGAGATGAGCTCTCAAAAGTAATGGCTTTCTTTTACTATGGAGCAGCCAAACCAGCTTGTTTGAATGGAATTGGTGATAGGCAGGAAGAAATTCCATCCATTCCTATCAATGCCCAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

243

Amino Acids

28.22

Weight (kDa)

4.5

Isoelectric Point (pI)

35.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31840 AT2G31840
fragaria_vesca	FvH4_1g00130 FvH4_1g00130 FvH4_1g00130 FvH4_1g00130
malus_domestica	MD15G1142700.v1.1
prunus_persica	Prupe.7G270500_v2.0.a1 Prupe.7G270500_v2.0.a1
pyrus_communis	pycom15g12870
rosa_chinensis	RchiOBHm_Chr2g0084441
rosa_laevigata	RLG00000015617
rosa_multiflora	Rmu_sc0009404.1_g000006 Rmu_sc0025868.1_g000001
rosa_roxburghii	Rroxscaffold_2G00156080
rosa_rugosa	Rorug01G0453600 Rorug01G0453700 Rorug01G0453700 Rorug01G0453800 Rorug01G0453900
rosa_samantha	Rh2AG001900 Rh2BG001600 Rh2CG001800 Rh2DG002000
rosa_wichuraiana	Rw2G000160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	546
AccII	CGCG	1 cut(s)	189
AciI	CCGC	3 cut(s)	187, 189, 609
AclWI	GGATC	2 cut(s)	152, 210
AcoI	YGGCCR	2 cut(s)	126, 184
AcsI	RAATTY	2 cut(s)	423, 699
AfaI	GTAC	2 cut(s)	387, 450
AfiI	CCNNNNNNNGG	2 cut(s)	67, 573
AgsI	TTSAA	4 cut(s)	23, 196, 358, 673
AhlI	ACTAGT	1 cut(s)	283
AjnI	CCWGG	1 cut(s)	104
AluBI	AGCT	3 cut(s)	85, 619, 665
AluI	AGCT	3 cut(s)	85, 619, 665
Alw21I	GWGCWC	1 cut(s)	621
Alw26I	GTCTC	2 cut(s)	10, 341
AlwI	GGATC	2 cut(s)	152, 210
Ama87I	CYCGRG	1 cut(s)	551
AoxI	GGCC	3 cut(s)	126, 167, 184
ApeKI	GCWGC	1 cut(s)	653
ApoI	RAATTY	2 cut(s)	423, 699
Asp700I	GAANNNNTTC	2 cut(s)	423, 699
AspS9I	GGNCC	2 cut(s)	102, 118
AsuC2I	CCSGG	1 cut(s)	62
AsuHPI	GGTGA	3 cut(s)	471, 556, 695
AvaI	CYCGRG	1 cut(s)	551
AvaII	GGWCC	2 cut(s)	102, 118
BalI	TGGCCA	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	621
Bbv12I	GWGCWC	1 cut(s)	621
BbvI	GCAGC	1 cut(s)	665
BccI	CCATC	2 cut(s)	323, 712
BceAI	ACGGC	1 cut(s)	199
BciT130I	CCWGG	1 cut(s)	106
BcnI	CCSGG	1 cut(s)	62
BcoDI	GTCTC	2 cut(s)	10, 341
BcuI	ACTAGT	1 cut(s)	283
BfaI	CTAG	1 cut(s)	284
BglII	AGATCT	1 cut(s)	579
BisI	GCNGC	2 cut(s)	187, 654
BlsI	GCNGC	2 cut(s)	188, 655
Bme1390I	CCNGG	2 cut(s)	62, 106
Bme18I	GGWCC	2 cut(s)	102, 118
BmeT110I	CYCGRG	1 cut(s)	551
BmgT120I	GGNCC	2 cut(s)	102, 118
BmrFI	CCNGG	2 cut(s)	62, 106
BmsI	GCATC	2 cut(s)	166, 490
BplI	GAGNNNNNCTC	2 cut(s)	603, 635
BpmI	CTGGAG	1 cut(s)	458
BpuMI	CCSGG	1 cut(s)	62
BsaBI	GATNNNNATC	1 cut(s)	224
BsaI	GGTCTC	1 cut(s)	341
BsaJI	CCNNGG	3 cut(s)	187, 239, 567
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 573
Bse1I	ACTGG	1 cut(s)	441
Bse8I	GATNNNNATC	1 cut(s)	224
BseBI	CCWGG	1 cut(s)	106
BseDI	CCNNGG	3 cut(s)	187, 239, 567
BseGI	GGATG	5 cut(s)	70, 154, 160, 253, 704
BseJI	GATNNNNATC	1 cut(s)	224
BseLI	CCNNNNNNNGG	2 cut(s)	67, 573
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	1 cut(s)	441
BseRI	GAGGAG	4 cut(s)	86, 89, 92, 95
BseX3I	CGGCCG	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	665
BseYI	CCCAGC	1 cut(s)	572
Bsh1236I	CGCG	1 cut(s)	189
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	3 cut(s)	128, 169, 186
BsiEI	CGRYCG	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	621
BsiHKCI	CYCGRG	1 cut(s)	551
BsiSI	CCGG	1 cut(s)	62
BslFI	GGGAC	1 cut(s)	297
BslI	CCNNNNNNNGG	2 cut(s)	67, 573
BsmAI	GTCTC	2 cut(s)	10, 341
BsmFI	GGGAC	1 cut(s)	297
BsnI	GGCC	3 cut(s)	128, 169, 186
Bso31I	GGTCTC	1 cut(s)	341
BsoBI	CYCGRG	1 cut(s)	551
Bsp1286I	GDGCHC	1 cut(s)	621
Bsp1407I	TGTACA	2 cut(s)	385, 448
Bsp143I	GATC	4 cut(s)	157, 202, 555, 579
BspACI	CCGC	3 cut(s)	187, 189, 609
BspANI	GGCC	3 cut(s)	128, 169, 186
BspCNI	CTCAG	1 cut(s)	502
BspFNI	CGCG	1 cut(s)	189
BspPI	GGATC	2 cut(s)	152, 210
BspTNI	GGTCTC	1 cut(s)	341
BsrGI	TGTACA	2 cut(s)	385, 448
BsrI	ACTGG	1 cut(s)	441
BssECI	CCNNGG	3 cut(s)	187, 239, 567
BssMI	GATC	4 cut(s)	157, 202, 555, 579
BssT1I	CCWWGG	2 cut(s)	239, 567
Bst2UI	CCWGG	1 cut(s)	106
Bst4CI	ACNGT	1 cut(s)	352
Bst6I	CTCTTC	1 cut(s)	339
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstAUI	TGTACA	2 cut(s)	385, 448
BstC8I	GCNNGC	1 cut(s)	470
BstDEI	CTNAG	1 cut(s)	510
BstDSI	CCRYGG	1 cut(s)	187
BstF5I	GGATG	5 cut(s)	70, 154, 160, 253, 704
BstFNI	CGCG	1 cut(s)	189
BstKTI	GATC	4 cut(s)	160, 205, 558, 582
BstMAI	GTCTC	2 cut(s)	10, 341
BstMBI	GATC	4 cut(s)	157, 202, 555, 579
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	2 cut(s)	500, 662
BstNI	CCWGG	1 cut(s)	106
BstSCI	CCNGG	2 cut(s)	60, 104
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	665
BstX2I	RGATCY	1 cut(s)	579
BstYI	RGATCY	1 cut(s)	579
BstZI	CGGCCG	1 cut(s)	184
BsuRI	GGCC	3 cut(s)	128, 169, 186
BtgI	CCRYGG	1 cut(s)	187
BtsCI	GGATG	5 cut(s)	70, 154, 160, 253, 704
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	330
Cac8I	GCNNGC	1 cut(s)	470
Cfr13I	GGNCC	2 cut(s)	102, 118
Cfr42I	CCGCGG	1 cut(s)	190
Csp6I	GTAC	2 cut(s)	386, 449
CviAII	CATG	2 cut(s)	515, 729
CviQI	GTAC	2 cut(s)	386, 449
DdeI	CTNAG	1 cut(s)	510
DpnI	GATC	4 cut(s)	159, 204, 557, 581
DpnII	GATC	4 cut(s)	157, 202, 555, 579
EaeI	YGGCCR	2 cut(s)	126, 184
EagI	CGGCCG	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Ecl136II	GAGCTC	1 cut(s)	619
EclXI	CGGCCG	1 cut(s)	184
Eco130I	CCWWGG	2 cut(s)	239, 567
Eco24I	GRGCYC	1 cut(s)	621
Eco31I	GGTCTC	1 cut(s)	341
Eco47I	GGWCC	2 cut(s)	102, 118
Eco52I	CGGCCG	1 cut(s)	184
Eco53kI	GAGCTC	1 cut(s)	619
Eco88I	CYCGRG	1 cut(s)	551
EcoICRI	GAGCTC	1 cut(s)	619
EcoO109I	RGGNCCY	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	104
EcoT14I	CCWWGG	2 cut(s)	239, 567
EcoT38I	GRGCYC	1 cut(s)	621
ErhI	CCWWGG	2 cut(s)	239, 567
FaeI	CATG	2 cut(s)	518, 732
FaqI	GGGAC	1 cut(s)	297
FatI	CATG	2 cut(s)	514, 728
FblI	GTMKAC	1 cut(s)	546
Fnu4HI	GCNGC	2 cut(s)	187, 654
FokI	GGATG	5 cut(s)	77, 161, 167, 260, 691
FriOI	GRGCYC	1 cut(s)	621
Fsp4HI	GCNGC	2 cut(s)	187, 654
FspBI	CTAG	1 cut(s)	284
GluI	GCNGC	2 cut(s)	187, 654
GsaI	CCCAGC	1 cut(s)	576
GsuI	CTGGAG	1 cut(s)	458
HaeIII	GGCC	3 cut(s)	128, 169, 186
HapII	CCGG	1 cut(s)	62
Hin1II	CATG	2 cut(s)	518, 732
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	3 cut(s)	471, 556, 695
Hpy166II	GTNNAC	1 cut(s)	547
Hpy188I	TCNGA	2 cut(s)	10, 429
Hpy188III	TCNNGA	3 cut(s)	116, 161, 590
Hpy8I	GTNNAC	1 cut(s)	547
Hpy99I	CGWCG	2 cut(s)	185, 266
HpyAV	CCTTC	4 cut(s)	131, 238, 436, 486
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4V	TGCA	2 cut(s)	468, 494
HpyF10VI	GCNNNNNNNGC	2 cut(s)	500, 662
HpyF3I	CTNAG	1 cut(s)	510
Hsp92II	CATG	2 cut(s)	518, 732
KspI	CCGCGG	1 cut(s)	190
Kzo9I	GATC	4 cut(s)	157, 202, 555, 579
LmnI	GCTCC	2 cut(s)	82, 650
Lsp1109I	GCAGC	1 cut(s)	665
LweI	GCATC	2 cut(s)	166, 490
MaeI	CTAG	1 cut(s)	284
MaeIII	GTNAC	3 cut(s)	272, 505, 590
MalI	GATC	4 cut(s)	159, 204, 557, 581
MboI	GATC	4 cut(s)	157, 202, 555, 579
MboII	GAAGA	4 cut(s)	356, 553, 589, 707
MfeI	CAATTG	1 cut(s)	495
MflI	RGATCY	1 cut(s)	579
MhlI	GDGCHC	1 cut(s)	621
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	9 cut(s)	36, 206, 301, 423, 453, 463, 495, 678, 699
MluNI	TGGCCA	1 cut(s)	128
MmeI	TCCRAC	2 cut(s)	30, 180
MnlI	CCTC	6 cut(s)	64, 67, 70, 73, 145, 147
Mox20I	TGGCCA	1 cut(s)	128
MroXI	GAANNNNTTC	2 cut(s)	423, 699
MscI	TGGCCA	1 cut(s)	128
MslI	CAYNNNNRTG	1 cut(s)	484
Msp20I	TGGCCA	1 cut(s)	128
MspA1I	CMGCKG	1 cut(s)	189
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	2 cut(s)	62, 106
MunI	CAATTG	1 cut(s)	495
MvaI	CCWGG	1 cut(s)	106
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	2 cut(s)	500, 662
NciI	CCSGG	1 cut(s)	62
NdeII	GATC	4 cut(s)	157, 202, 555, 579
NlaIII	CATG	2 cut(s)	518, 732
NmuCI	GTSAC	2 cut(s)	272, 590
PdmI	GAANNNNTTC	2 cut(s)	423, 699
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	188, 655
PpuMI	RGGWCCY	1 cut(s)	118
Psp124BI	GAGCTC	1 cut(s)	621
Psp5II	RGGWCCY	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	104
PspFI	CCCAGC	1 cut(s)	572
PspGI	CCWGG	1 cut(s)	104
PspPI	GGNCC	2 cut(s)	102, 118
PspPPI	RGGWCCY	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	579
RsaI	GTAC	2 cut(s)	387, 450
RsaNI	GTAC	2 cut(s)	386, 449
RseI	CAYNNNNRTG	1 cut(s)	484
SacI	GAGCTC	1 cut(s)	621
SacII	CCGCGG	1 cut(s)	190
SatI	GCNGC	2 cut(s)	187, 654
Sau3AI	GATC	4 cut(s)	157, 202, 555, 579
Sau96I	GGNCC	2 cut(s)	102, 118
ScrFI	CCNGG	2 cut(s)	62, 106
SduI	GDGCHC	1 cut(s)	621
SetI	ASST	5 cut(s)	87, 123, 478, 621, 667
SfaNI	GCATC	2 cut(s)	166, 490
Sfr303I	CCGCGG	1 cut(s)	190
SgrBI	CCGCGG	1 cut(s)	190
SinI	GGWCC	2 cut(s)	102, 118
SmiMI	CAYNNNNRTG	1 cut(s)	484
SpeI	ACTAGT	1 cut(s)	283
Sse9I	AATT	9 cut(s)	36, 206, 301, 423, 453, 463, 495, 678, 699
SsiI	CCGC	3 cut(s)	187, 189, 609
SspMI	CTAG	1 cut(s)	284
SstI	GAGCTC	1 cut(s)	621
StyD4I	CCNGG	2 cut(s)	60, 104
StyI	CCWWGG	2 cut(s)	239, 567
TaaI	ACNGT	1 cut(s)	352
TasI	AATT	9 cut(s)	36, 206, 301, 423, 453, 463, 495, 678, 699
TatI	WGTACW	2 cut(s)	385, 448
TauI	GCSGC	1 cut(s)	189
TfiI	GAWTC	1 cut(s)	5
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	2 cut(s)	272, 590
TseI	GCWGC	1 cut(s)	653
Tsp45I	GTSAC	2 cut(s)	272, 590
TspDTI	ATGAA	2 cut(s)	294, 432
TspRI	CASTG	1 cut(s)	337
VpaK11BI	GGWCC	2 cut(s)	102, 118
XapI	RAATTY	2 cut(s)	423, 699
XmiI	GTMKAC	1 cut(s)	546
XmnI	GAANNNNTTC	2 cut(s)	423, 699
XspI	CTAG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.