Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007316

Physical Location & Seq

Genomic Coordinates Forward (+)

8816357 .. 8817409

Gene Structure 1053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g12870.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGGTTCTCAAGAGAGACGTGAATGGAGAAACACAATTAGACGAGTTTTAGATACCAACCCCGATGTTGAGGAGGAGTTAGACCCTAGTGAAAGGACAAAGAAGGTGCAACAACTGCTGGCCAATTATCCTCTTGTTGTAGAGGAGGAGGATCCTGAATGGCCTGAGGATGCGGATGGCCGTGGTTTCAAGTTGGATCAATTCTTTGACAAGATTACCATCAAGAATACGCCAAAGAAGGATGACGATGAGAATGATGACAGCGACAGTGAAGTAGTGTGGCAAGATGATAACTACATTCGTCCCATTAAAGATGTAACAACTGCAGAATGGGAAGAGACTGTTTTCAAGGACATCAGCCCTTTAATCATTCTTGTACACAATCGCTATAGAAGACCAAAAGAGAATGAAAGAATCCGGAATGAACTGGAGAAGGCTATACACATTATATGGAACTGCAGGCTACCTTCACCAAGGTGTATTGCAGTTGATGCTGTTACTGAACATGATTTGGTATCTGCTCTCCAAGTGTCTGTCTTCCCCGAGATCATCTTCACTAAAGCTGGGAAGATCTTATATCGCGAGAAAGAAATTCGAAGTGGAGATGAGTTGTCAAAGGTGATGGCTTTCTTCTACTATGGAGCAGCCAGACCACCTTGTTTGAATGGCATTGGAGATAGGCAGGAAGCAATTCCATATGTTCCCGTCAGTTCCCAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

241

Amino Acids

27.96

Weight (kDa)

4.81

Isoelectric Point (pI)

49.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31840 AT2G31840
fragaria_vesca	FvH4_1g00130 FvH4_1g00130 FvH4_1g00130 FvH4_1g00130
malus_domestica	MD15G1142700.v1.1
prunus_persica	Prupe.7G270500_v2.0.a1 Prupe.7G270500_v2.0.a1
pyrus_communis	pycom15g12870
rosa_chinensis	RchiOBHm_Chr2g0084441
rosa_laevigata	RLG00000015617
rosa_multiflora	Rmu_sc0009404.1_g000006 Rmu_sc0025868.1_g000001
rosa_roxburghii	Rroxscaffold_2G00156080
rosa_rugosa	Rorug01G0453600 Rorug01G0453700 Rorug01G0453700 Rorug01G0453800 Rorug01G0453900
rosa_samantha	Rh2AG001900 Rh2BG001600 Rh2CG001800 Rh2DG002000
rosa_wichuraiana	Rw2G000160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	582
AccIII	TCCGGA	1 cut(s)	417
AciI	CCGC	1 cut(s)	173
AclWI	GGATC	3 cut(s)	146, 159, 204
AcoI	YGGCCR	2 cut(s)	120, 178
AcsI	RAATTY	1 cut(s)	591
AfaI	GTAC	1 cut(s)	378
AgsI	TTSAA	3 cut(s)	190, 349, 664
AjiI	CACGTC	1 cut(s)	20
AleI	CACNNNNGTG	1 cut(s)	475
AluBI	AGCT	1 cut(s)	563
AluI	AGCT	1 cut(s)	563
Alw26I	GTCTC	2 cut(s)	10, 332
AlwI	GGATC	3 cut(s)	146, 159, 204
Ama87I	CYCGRG	1 cut(s)	542
Aor13HI	TCCGGA	1 cut(s)	417
AoxI	GGCC	3 cut(s)	120, 161, 178
ApeKI	GCWGC	1 cut(s)	644
ApoI	RAATTY	1 cut(s)	591
Asp700I	GAANNNNTTC	1 cut(s)	690
AsuHPI	GGTGA	2 cut(s)	462, 631
AsuII	TTCGAA	1 cut(s)	595
AvaI	CYCGRG	1 cut(s)	542
AxyI	CCTNAGG	1 cut(s)	165
BalI	TGGCCA	1 cut(s)	122
BamHI	GGATCC	1 cut(s)	151
BbsI	GAAGAC	2 cut(s)	400, 529
BbvI	GCAGC	1 cut(s)	656
BccI	CCATC	3 cut(s)	170, 227, 616
BceAI	ACGGC	1 cut(s)	165
BcoDI	GTCTC	2 cut(s)	10, 332
BfaI	CTAG	1 cut(s)	87
BfmI	CTRYAG	3 cut(s)	324, 388, 457
BglII	AGATCT	1 cut(s)	570
BisI	GCNGC	1 cut(s)	645
BlsI	GCNGC	1 cut(s)	646
BmeT110I	CYCGRG	1 cut(s)	542
BmgBI	CACGTC	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	153
BmsI	GCATC	2 cut(s)	160, 481
BpiI	GAAGAC	2 cut(s)	400, 529
BpmI	CTGGAG	1 cut(s)	449
Bpu14I	TTCGAA	1 cut(s)	595
BsaBI	GATNNNNATC	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	181, 473
BsaWI	WCCGGW	1 cut(s)	417
Bse1I	ACTGG	1 cut(s)	432
Bse21I	CCTNAGG	1 cut(s)	165
Bse8I	GATNNNNATC	1 cut(s)	218
BseAI	TCCGGA	1 cut(s)	417
BseDI	CCNNGG	2 cut(s)	181, 473
BseGI	GGATG	3 cut(s)	175, 181, 247
BseJI	GATNNNNATC	1 cut(s)	218
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	432
BseRI	GAGGAG	4 cut(s)	86, 89, 158, 161
BseXI	GCAGC	1 cut(s)	656
BseYI	CCCAGC	1 cut(s)	563
Bsh1236I	CGCG	1 cut(s)	582
BshFI	GGCC	3 cut(s)	122, 163, 180
BsiHKCI	CYCGRG	1 cut(s)	542
BsiSI	CCGG	1 cut(s)	418
BslFI	GGGAC	1 cut(s)	288
BsmAI	GTCTC	2 cut(s)	10, 332
BsmBI	CGTCTC	1 cut(s)	10
BsmFI	GGGAC	1 cut(s)	288
BsnI	GGCC	3 cut(s)	122, 163, 180
BsoBI	CYCGRG	1 cut(s)	542
Bsp119I	TTCGAA	1 cut(s)	595
Bsp13I	TCCGGA	1 cut(s)	417
Bsp1407I	TGTACA	1 cut(s)	376
Bsp143I	GATC	4 cut(s)	151, 196, 546, 570
Bsp68I	TCGCGA	1 cut(s)	582
BspACI	CCGC	1 cut(s)	173
BspANI	GGCC	3 cut(s)	122, 163, 180
BspCNI	CTCAG	1 cut(s)	157
BspEI	TCCGGA	1 cut(s)	417
BspFNI	CGCG	1 cut(s)	582
BspLI	GGNNCC	1 cut(s)	153
BspMAI	CTGCAG	2 cut(s)	328, 461
BspPI	GGATC	3 cut(s)	146, 159, 204
BspT104I	TTCGAA	1 cut(s)	595
BsrGI	TGTACA	1 cut(s)	376
BsrI	ACTGG	1 cut(s)	432
BssECI	CCNNGG	2 cut(s)	181, 473
BssMI	GATC	4 cut(s)	151, 196, 546, 570
BssT1I	CCWWGG	1 cut(s)	473
Bst4CI	ACNGT	2 cut(s)	269, 343
Bst6I	CTCTTC	1 cut(s)	330
BstAPI	GCANNNNNTGC	2 cut(s)	115, 491
BstAUI	TGTACA	1 cut(s)	376
BstBI	TTCGAA	1 cut(s)	595
BstC8I	GCNNGC	2 cut(s)	120, 461
BstDEI	CTNAG	1 cut(s)	165
BstDSI	CCRYGG	1 cut(s)	181
BstF5I	GGATG	3 cut(s)	175, 181, 247
BstFNI	CGCG	1 cut(s)	582
BstKTI	GATC	4 cut(s)	154, 199, 549, 573
BstMAI	GTCTC	2 cut(s)	10, 332
BstMBI	GATC	4 cut(s)	151, 196, 546, 570
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 491
BstSFI	CTRYAG	3 cut(s)	324, 388, 457
BstUI	CGCG	1 cut(s)	582
BstV1I	GCAGC	1 cut(s)	656
BstV2I	GAAGAC	2 cut(s)	400, 529
BstX2I	RGATCY	2 cut(s)	151, 570
BstYI	RGATCY	2 cut(s)	151, 570
Bsu36I	CCTNAGG	1 cut(s)	165
BsuRI	GGCC	3 cut(s)	122, 163, 180
BtgI	CCRYGG	1 cut(s)	181
BtrI	CACGTC	1 cut(s)	20
BtsCI	GGATG	3 cut(s)	175, 181, 247
BtsIMutI	CAGTG	1 cut(s)	274
BtuMI	TCGCGA	1 cut(s)	582
Cac8I	GCNNGC	2 cut(s)	120, 461
Csp6I	GTAC	1 cut(s)	377
CspCI	CAANNNNNGTGG	2 cut(s)	642, 677
CviAII	CATG	2 cut(s)	506, 720
CviJI	RGCY	9 cut(s)	122, 163, 180, 360, 437, 463, 563, 626, 647
CviKI_1	RGCY	9 cut(s)	122, 163, 180, 360, 437, 463, 563, 626, 647
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	4 cut(s)	153, 198, 548, 572
DpnII	GATC	4 cut(s)	151, 196, 546, 570
EaeI	YGGCCR	2 cut(s)	120, 178
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco130I	CCWWGG	1 cut(s)	473
Eco81I	CCTNAGG	1 cut(s)	165
Eco88I	CYCGRG	1 cut(s)	542
EcoT14I	CCWWGG	1 cut(s)	473
ErhI	CCWWGG	1 cut(s)	473
Esp3I	CGTCTC	1 cut(s)	10
FaeI	CATG	2 cut(s)	509, 723
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	2 cut(s)	505, 719
FauNDI	CATATG	1 cut(s)	697
Fnu4HI	GCNGC	1 cut(s)	645
FokI	GGATG	3 cut(s)	182, 188, 254
Fsp4HI	GCNGC	1 cut(s)	645
FspBI	CTAG	1 cut(s)	87
GluI	GCNGC	1 cut(s)	645
GsaI	CCCAGC	1 cut(s)	567
GsuI	CTGGAG	1 cut(s)	449
HaeIII	GGCC	3 cut(s)	122, 163, 180
HapII	CCGG	1 cut(s)	418
Hin1II	CATG	2 cut(s)	509, 723
HinfI	GANTC	1 cut(s)	414
HpaII	CCGG	1 cut(s)	418
HphI	GGTGA	2 cut(s)	462, 631
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188III	TCNNGA	5 cut(s)	11, 155, 223, 418, 581
Hpy8I	GTNNAC	1 cut(s)	379
HpyAV	CCTTC	4 cut(s)	97, 232, 427, 477
HpyCH4III	ACNGT	2 cut(s)	269, 343
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	4 cut(s)	109, 326, 459, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 491
HpyF3I	CTNAG	1 cut(s)	165
HpySE526I	ACGT	1 cut(s)	19
Hsp92II	CATG	2 cut(s)	509, 723
Kpn2I	TCCGGA	1 cut(s)	417
Kzo9I	GATC	4 cut(s)	151, 196, 546, 570
LmnI	GCTCC	1 cut(s)	641
LpnPI	CCDG	9 cut(s)	104, 168, 177, 413, 431, 445, 549, 661, 668
Lsp1109I	GCAGC	1 cut(s)	656
LweI	GCATC	2 cut(s)	160, 481
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	2 cut(s)	316, 496
MalI	GATC	4 cut(s)	153, 198, 548, 572
MboI	GATC	4 cut(s)	151, 196, 546, 570
MboII	GAAGA	6 cut(s)	347, 405, 529, 544, 580, 622
MflI	RGATCY	2 cut(s)	151, 570
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	5 cut(s)	36, 124, 200, 591, 690
MluNI	TGGCCA	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	7 cut(s)	64, 67, 136, 139, 141, 142, 160
Mox20I	TGGCCA	1 cut(s)	122
MroI	TCCGGA	1 cut(s)	417
MroXI	GAANNNNTTC	1 cut(s)	690
MscI	TGGCCA	1 cut(s)	122
MseI	TTAA	2 cut(s)	309, 365
MslI	CAYNNNNRTG	1 cut(s)	475
Msp20I	TGGCCA	1 cut(s)	122
MspI	CCGG	1 cut(s)	418
MvnI	CGCG	1 cut(s)	582
MwoI	GCNNNNNNNGC	2 cut(s)	115, 491
NdeI	CATATG	1 cut(s)	697
NdeII	GATC	4 cut(s)	151, 196, 546, 570
NlaIII	CATG	2 cut(s)	509, 723
NlaIV	GGNNCC	1 cut(s)	153
NruI	TCGCGA	1 cut(s)	582
NspV	TTCGAA	1 cut(s)	595
OliI	CACNNNNGTG	1 cut(s)	475
PdmI	GAANNNNTTC	1 cut(s)	690
PfeI	GAWTC	1 cut(s)	414
PkrI	GCNGC	1 cut(s)	646
PspFI	CCCAGC	1 cut(s)	563
PspN4I	GGNNCC	1 cut(s)	153
PstI	CTGCAG	2 cut(s)	328, 461
PsuI	RGATCY	2 cut(s)	151, 570
RruI	TCGCGA	1 cut(s)	582
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
RseI	CAYNNNNRTG	1 cut(s)	475
SaqAI	TTAA	2 cut(s)	309, 365
SatI	GCNGC	1 cut(s)	645
Sau3AI	GATC	4 cut(s)	151, 196, 546, 570
SetI	ASST	7 cut(s)	22, 108, 469, 479, 565, 621, 658
SfaNI	GCATC	2 cut(s)	160, 481
SfcI	CTRYAG	3 cut(s)	324, 388, 457
SfuI	TTCGAA	1 cut(s)	595
SmiMI	CAYNNNNRTG	1 cut(s)	475
SmlI	CTYRAG	1 cut(s)	9
SmoI	CTYRAG	1 cut(s)	9
Sse9I	AATT	5 cut(s)	36, 124, 200, 591, 690
SsiI	CCGC	1 cut(s)	173
SspMI	CTAG	1 cut(s)	87
StyI	CCWWGG	1 cut(s)	473
TaaI	ACNGT	2 cut(s)	269, 343
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	1 cut(s)	595
TasI	AATT	5 cut(s)	36, 124, 200, 591, 690
TatI	WGTACW	1 cut(s)	376
TfiI	GAWTC	1 cut(s)	414
Tru1I	TTAA	2 cut(s)	309, 365
Tru9I	TTAA	2 cut(s)	309, 365
TscAI	CASTG	1 cut(s)	274
TseI	GCWGC	1 cut(s)	644
TspDTI	ATGAA	2 cut(s)	423, 438
TspRI	CASTG	1 cut(s)	274
XapI	RAATTY	1 cut(s)	591
XmnI	GAANNNNTTC	1 cut(s)	690
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.