Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025868.1

Orthogroup ID

OG0007316

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 495

Gene Structure 494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025868.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 494 bp

atggctctgcaacatgctatgcggctcccatatctcttctcctcatcaacacacaacaaacccatttcgttgattagtcgtcaagggcatcaattcagcgcaaaaagaagagtggttactagattgtatgcctctagttcaggtgacccctatttgatggattctgatgagagacttgaatggagagagaaaattagacaagtgttggataaaaacccggatgtggaggaggaggaggagctagaccctactgataggaccaggaaagtgcaggaccttctggccaactatcctctcgttgtggatgaggatgatcctgaatggcctgatgatgccgacggccgcggtttcaagttggatcaattctttgacaatattaccatcaagaacactccaaggaaggatgacaatgacgacgacgacgatagtgacaatgaactagtatggcaagatgataattatattcgtcccatcaaagatataaccactgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

19.2

Weight (kDa)

4.46

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31840 AT2G31840
fragaria_vesca	FvH4_1g00130 FvH4_1g00130 FvH4_1g00130 FvH4_1g00130
malus_domestica	MD15G1142700.v1.1
prunus_persica	Prupe.7G270500_v2.0.a1 Prupe.7G270500_v2.0.a1
pyrus_communis	pycom15g12870
rosa_chinensis	RchiOBHm_Chr2g0084441
rosa_laevigata	RLG00000015617
rosa_multiflora	Rmu_sc0009404.1_g000006 Rmu_sc0025868.1_g000001
rosa_roxburghii	Rroxscaffold_2G00156080
rosa_rugosa	Rorug01G0453600 Rorug01G0453700 Rorug01G0453700 Rorug01G0453800 Rorug01G0453900
rosa_samantha	Rh2AG001900 Rh2BG001600 Rh2CG001800 Rh2DG002000
rosa_wichuraiana	Rw2G000160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	345
AciI	CCGC	3 cut(s)	22, 343, 345
AclWI	GGATC	2 cut(s)	308, 366
AcoI	YGGCCR	2 cut(s)	282, 340
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	2 cut(s)	179, 352
AhlI	ACTAGT	1 cut(s)	439
AjnI	CCWGG	1 cut(s)	260
AluBI	AGCT	1 cut(s)	241
AluI	AGCT	1 cut(s)	241
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	2 cut(s)	308, 366
AoxI	GGCC	3 cut(s)	282, 323, 340
AspLEI	GCGC	1 cut(s)	101
AspS9I	GGNCC	2 cut(s)	258, 274
AsuC2I	CCSGG	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	155
AvaII	GGWCC	2 cut(s)	258, 274
BalI	TGGCCA	1 cut(s)	284
BarI	GAAGNNNNNNTAC	2 cut(s)	100, 132
BccI	CCATC	3 cut(s)	151, 389, 479
BceAI	ACGGC	1 cut(s)	355
BciT130I	CCWGG	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	218
BcoDI	GTCTC	1 cut(s)	166
BcuI	ACTAGT	1 cut(s)	439
BfaI	CTAG	4 cut(s)	120, 135, 242, 440
BisI	GCNGC	2 cut(s)	23, 343
BlsI	GCNGC	2 cut(s)	24, 344
Bme1390I	CCNGG	2 cut(s)	218, 262
Bme18I	GGWCC	2 cut(s)	258, 274
BmgT120I	GGNCC	2 cut(s)	258, 274
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	2 cut(s)	218, 262
BmsI	GCATC	2 cut(s)	97, 322
BpuMI	CCSGG	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	343, 395
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	2 cut(s)	343, 395
BseGI	GGATG	4 cut(s)	226, 310, 316, 409
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseRI	GAGGAG	5 cut(s)	31, 242, 245, 248, 251
BseX3I	CGGCCG	1 cut(s)	340
BsgI	GTGCAG	1 cut(s)	290
Bsh1236I	CGCG	1 cut(s)	345
Bsh1285I	CGRYCG	1 cut(s)	343
BshFI	GGCC	3 cut(s)	284, 325, 342
BsiEI	CGRYCG	1 cut(s)	343
BsiSI	CCGG	1 cut(s)	218
BslFI	GGGAC	1 cut(s)	453
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	453
BsnI	GGCC	3 cut(s)	284, 325, 342
Bsp143I	GATC	2 cut(s)	313, 358
BspACI	CCGC	3 cut(s)	22, 343, 345
BspANI	GGCC	3 cut(s)	284, 325, 342
BspFNI	CGCG	1 cut(s)	345
BspLI	GGNNCC	1 cut(s)	26
BspPI	GGATC	2 cut(s)	308, 366
BssECI	CCNNGG	2 cut(s)	343, 395
BssMI	GATC	2 cut(s)	313, 358
BssT1I	CCWWGG	1 cut(s)	395
Bst2UI	CCWGG	1 cut(s)	262
Bst6I	CTCTTC	2 cut(s)	41, 103
BstDSI	CCRYGG	1 cut(s)	343
BstEII	GGTNACC	1 cut(s)	143
BstF5I	GGATG	4 cut(s)	226, 310, 316, 409
BstFNI	CGCG	1 cut(s)	345
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	2 cut(s)	316, 361
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	2 cut(s)	313, 358
BstMCI	CGRYCG	1 cut(s)	343
BstNI	CCWGG	1 cut(s)	262
BstNSI	RCATGY	1 cut(s)	17
BstPI	GGTNACC	1 cut(s)	143
BstSCI	CCNGG	2 cut(s)	216, 260
BstUI	CGCG	1 cut(s)	345
BstZI	CGGCCG	1 cut(s)	340
BsuRI	GGCC	3 cut(s)	284, 325, 342
BtgI	CCRYGG	1 cut(s)	343
BtsCI	GGATG	4 cut(s)	226, 310, 316, 409
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	1 cut(s)	486
CfoI	GCGC	1 cut(s)	101
Cfr13I	GGNCC	2 cut(s)	258, 274
Cfr42I	CCGCGG	1 cut(s)	346
CviAII	CATG	1 cut(s)	14
CviJI	RGCY	6 cut(s)	5, 25, 241, 284, 325, 342
CviKI_1	RGCY	6 cut(s)	5, 25, 241, 284, 325, 342
DpnI	GATC	2 cut(s)	315, 360
DpnII	GATC	2 cut(s)	313, 358
EaeI	YGGCCR	2 cut(s)	282, 340
EagI	CGGCCG	1 cut(s)	340
Eam1104I	CTCTTC	2 cut(s)	41, 103
EarI	CTCTTC	2 cut(s)	41, 103
EclXI	CGGCCG	1 cut(s)	340
Eco130I	CCWWGG	1 cut(s)	395
Eco47I	GGWCC	2 cut(s)	258, 274
Eco52I	CGGCCG	1 cut(s)	340
Eco91I	GGTNACC	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	274
EcoO65I	GGTNACC	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	395
FaeI	CATG	1 cut(s)	17
FaiI	YATR	7 cut(s)	15, 20, 31, 129, 445, 462, 482
FaqI	GGGAC	1 cut(s)	453
FatI	CATG	1 cut(s)	13
Fnu4HI	GCNGC	2 cut(s)	23, 343
FokI	GGATG	4 cut(s)	233, 317, 323, 416
Fsp4HI	GCNGC	2 cut(s)	23, 343
FspBI	CTAG	4 cut(s)	120, 135, 242, 440
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	2 cut(s)	23, 343
HaeIII	GGCC	3 cut(s)	284, 325, 342
HapII	CCGG	1 cut(s)	218
HhaI	GCGC	1 cut(s)	101
Hin1II	CATG	1 cut(s)	17
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	1 cut(s)	155
Hpy188I	TCNGA	1 cut(s)	166
Hpy188III	TCNNGA	2 cut(s)	317, 385
Hpy99I	CGWCG	4 cut(s)	341, 419, 422, 425
HpyAV	CCTTC	2 cut(s)	287, 394
HpyCH4V	TGCA	2 cut(s)	10, 271
Hsp92II	CATG	1 cut(s)	17
HspAI	GCGC	1 cut(s)	99
KspI	CCGCGG	1 cut(s)	346
Kzo9I	GATC	2 cut(s)	313, 358
LmnI	GCTCC	2 cut(s)	30, 238
LpnPI	CCDG	8 cut(s)	126, 231, 247, 257, 266, 274, 330, 339
LweI	GCATC	2 cut(s)	97, 322
MaeI	CTAG	4 cut(s)	120, 135, 242, 440
MaeIII	GTNAC	3 cut(s)	115, 143, 428
MalI	GATC	2 cut(s)	315, 360
MboI	GATC	2 cut(s)	313, 358
MboII	GAAGA	2 cut(s)	28, 120
MlsI	TGGCCA	1 cut(s)	284
MluCI	AATT	4 cut(s)	92, 192, 362, 457
MluNI	TGGCCA	1 cut(s)	284
MmeI	TCCRAC	2 cut(s)	186, 336
MnlI	CCTC	8 cut(s)	52, 142, 220, 223, 226, 229, 301, 303
Mox20I	TGGCCA	1 cut(s)	284
MscI	TGGCCA	1 cut(s)	284
Msp20I	TGGCCA	1 cut(s)	284
MspA1I	CMGCKG	1 cut(s)	345
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	2 cut(s)	218, 262
MvaI	CCWGG	1 cut(s)	262
MvnI	CGCG	1 cut(s)	345
NciI	CCSGG	1 cut(s)	218
NdeII	GATC	2 cut(s)	313, 358
NlaIII	CATG	1 cut(s)	17
NlaIV	GGNNCC	1 cut(s)	26
NmuCI	GTSAC	2 cut(s)	143, 428
NspI	RCATGY	1 cut(s)	17
PcsI	WCGNNNNNNNCGW	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	161
PkrI	GCNGC	2 cut(s)	24, 344
PpuMI	RGGWCCY	1 cut(s)	274
Psp5II	RGGWCCY	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	260
PspEI	GGTNACC	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	1 cut(s)	26
PspPI	GGNCC	2 cut(s)	258, 274
PspPPI	RGGWCCY	1 cut(s)	274
SacII	CCGCGG	1 cut(s)	346
SatI	GCNGC	2 cut(s)	23, 343
Sau3AI	GATC	2 cut(s)	313, 358
Sau96I	GGNCC	2 cut(s)	258, 274
ScrFI	CCNGG	2 cut(s)	218, 262
SetI	ASST	3 cut(s)	145, 243, 279
SfaNI	GCATC	2 cut(s)	97, 322
Sfr303I	CCGCGG	1 cut(s)	346
SgrBI	CCGCGG	1 cut(s)	346
SinI	GGWCC	2 cut(s)	258, 274
SpeI	ACTAGT	1 cut(s)	439
Sse9I	AATT	4 cut(s)	92, 192, 362, 457
SsiI	CCGC	3 cut(s)	22, 343, 345
SspI	AATATT	1 cut(s)	376
SspMI	CTAG	4 cut(s)	120, 135, 242, 440
StyD4I	CCNGG	2 cut(s)	216, 260
StyI	CCWWGG	1 cut(s)	395
TasI	AATT	4 cut(s)	92, 192, 362, 457
TauI	GCSGC	2 cut(s)	25, 345
TfiI	GAWTC	1 cut(s)	161
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	2 cut(s)	143, 428
Tsp45I	GTSAC	2 cut(s)	143, 428
TspDTI	ATGAA	1 cut(s)	450
TspRI	CASTG	1 cut(s)	493
VpaK11BI	GGWCC	2 cut(s)	258, 274
XceI	RCATGY	1 cut(s)	17
XspI	CTAG	4 cut(s)	120, 135, 242, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.