Rmu_sc0009404.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009404.1
OG0018124
Physical Location & Seq
Forward (+)
19144 .. 20210
1067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009404.1_g000005.1.cds

Sequence Viewer

Length: 678 bp
atggggatggtagccctttctctctgcctgctgcttgtcctggtgacgactacttctattgatcgtgcccatggggcaactccagtcccacatttgaagagtgttcggctttgcaaccagtgctccaaatgcgactccagtaaatgccctccaagtgaagcctacccccacatgacagcatttgacaacactcttattgctggtgctttacagtctgactatgtggatttgcatgacaaaggagtttattcagtgccaaatatcaaaggtggccaatcaacaaaatacaatgcttattttggctggaaatctacttctggttcagcttctggttatcacaggttcagcaactacatggacaaatgctcaggcggacaaacctaccttactgtggacaagcaagacaaggtcagccttcgatcattgaaatcactggaaagcttagcagatgctgactggaagtcttatagtccccctaagaaactaaatcacaaagagttccgtttctgggtctctcgcagtacaggaaaatgcctcactgtttttggaggtaaaacaaagaaacgaactgtgggtgtggccgactgcaagtttaatggctcaaaccgtggccagctgtttgccttccgctttcattaccaccaagccttctgttgctgtggtgttcacaatgagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

24.88

Weight (kDa)

9.28

Isoelectric Point (pI)

36.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018124)

Species Orthologous Gene IDs
prunus_persica Prupe.7G270400_v2.0.a1
pyrus_communis pycom290g00150
rosa_laevigata RLG00000015618
rosa_multiflora Rmu_sc0009404.1_g000005
rosa_roxburghii Rroxscaffold_2G00156090
rosa_rugosa Rorug01G0453900
rosa_samantha Rh2AG002000 Rh2BG001700 Rh2CG001900 Rh2DG002100
rosa_wichuraiana Rw2G000170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 372, 628
AcoI YGGCCR 3 cut(s) 271, 579, 610
AfaI GTAC 1 cut(s) 523
AfiI CCNNNNNNNGG 2 cut(s) 391, 508
AgsI TTSAA 2 cut(s) 97, 427
AhdI GACNNNNNGTC 1 cut(s) 460
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 3 cut(s) 326, 441, 616
AluI AGCT 3 cut(s) 326, 441, 616
Alw21I GWGCWC 1 cut(s) 125
Alw26I GTCTC 1 cut(s) 517
AlwNI CAGNNNCTG 2 cut(s) 329, 452
AoxI GGCC 3 cut(s) 271, 579, 610
ApeKI GCWGC 1 cut(s) 31
AsuHPI GGTGA 1 cut(s) 55
BaeGI GKGCMC 1 cut(s) 70
BalI TGGCCA 2 cut(s) 273, 612
Bbv12I GWGCWC 1 cut(s) 125
BbvI GCAGC 1 cut(s) 18
BciT130I CCWGG 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 517
BglI GCCNNNNNGGC 1 cut(s) 74
BisI GCNGC 1 cut(s) 32
BlpI GCTNAGC 1 cut(s) 442
BlsI GCNGC 1 cut(s) 33
Bme1390I CCNGG 1 cut(s) 41
BmeRI GACNNNNNGTC 1 cut(s) 460
BmrFI CCNGG 1 cut(s) 41
BmsI GCATC 1 cut(s) 439
BpmI CTGGAG 2 cut(s) 66, 121
Bpu10I CCTNAGC 1 cut(s) 367
Bpu1102I GCTNAGC 1 cut(s) 442
BsaI GGTCTC 1 cut(s) 517
BsaJI CCNNGG 2 cut(s) 70, 607
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 2 cut(s) 391, 508
Bse1I ACTGG 5 cut(s) 83, 118, 138, 438, 461
BseBI CCWGG 1 cut(s) 41
BseDI CCNNGG 2 cut(s) 70, 607
BseGI GGATG 1 cut(s) 12
BseLI CCNNNNNNNGG 2 cut(s) 391, 508
BseMII CTCAG 1 cut(s) 381
BseNI ACTGG 5 cut(s) 83, 118, 138, 438, 461
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 1 cut(s) 18
BshFI GGCC 3 cut(s) 273, 581, 612
BsiHKAI GWGCWC 1 cut(s) 125
BslFI GGGAC 2 cut(s) 71, 456
BslI CCNNNNNNNGG 2 cut(s) 391, 508
BsmAI GTCTC 1 cut(s) 517
BsmFI GGGAC 2 cut(s) 71, 456
BsnI GGCC 3 cut(s) 273, 581, 612
Bso31I GGTCTC 1 cut(s) 517
Bsp1286I GDGCHC 2 cut(s) 70, 125
Bsp143I GATC 2 cut(s) 61, 419
Bsp1720I GCTNAGC 1 cut(s) 442
Bsp19I CCATGG 1 cut(s) 70
BspACI CCGC 2 cut(s) 372, 628
BspANI GGCC 3 cut(s) 273, 581, 612
BspCNI CTCAG 1 cut(s) 380
BspTNI GGTCTC 1 cut(s) 517
BsrI ACTGG 5 cut(s) 83, 118, 138, 438, 461
BssECI CCNNGG 2 cut(s) 70, 607
BssMI GATC 2 cut(s) 61, 419
BssT1I CCWWGG 1 cut(s) 70
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 5 cut(s) 213, 391, 541, 571, 608
Bst6I CTCTTC 1 cut(s) 92
BstAPI GCANNNNNTGC 1 cut(s) 120
BstC8I GCNNGC 2 cut(s) 29, 614
BstDEI CTNAG 3 cut(s) 367, 442, 477
BstDSI CCRYGG 2 cut(s) 70, 607
BstF5I GGATG 1 cut(s) 12
BstKTI GATC 2 cut(s) 64, 422
BstMAI GTCTC 1 cut(s) 517
BstMBI GATC 2 cut(s) 61, 419
BstMWI GCNNNNNNNGC 3 cut(s) 74, 120, 129
BstNI CCWGG 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 39
BstSLI GKGCMC 1 cut(s) 70
BstV1I GCAGC 1 cut(s) 18
BsuRI GGCC 3 cut(s) 273, 581, 612
BtgI CCRYGG 2 cut(s) 70, 607
BtsCI GGATG 1 cut(s) 12
BtsIMutI CAGTG 4 cut(s) 125, 258, 431, 537
Cac8I GCNNGC 2 cut(s) 29, 614
CaiI CAGNNNCTG 2 cut(s) 329, 452
Csp6I GTAC 1 cut(s) 522
CviAII CATG 4 cut(s) 71, 172, 233, 355
CviQI GTAC 1 cut(s) 522
DdeI CTNAG 3 cut(s) 367, 442, 477
DpnI GATC 2 cut(s) 63, 421
DpnII GATC 2 cut(s) 61, 419
DriI GACNNNNNGTC 1 cut(s) 460
EaeI YGGCCR 3 cut(s) 271, 579, 610
Eam1104I CTCTTC 1 cut(s) 92
Eam1105I GACNNNNNGTC 1 cut(s) 460
EarI CTCTTC 1 cut(s) 92
EciI GGCGGA 1 cut(s) 387
Eco130I CCWWGG 1 cut(s) 70
Eco31I GGTCTC 1 cut(s) 517
EcoRII CCWGG 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 4 cut(s) 74, 175, 236, 358
FaiI YATR 6 cut(s) 72, 173, 222, 234, 356, 468
FaqI GGGAC 2 cut(s) 71, 456
FatI CATG 4 cut(s) 70, 171, 232, 354
Fnu4HI GCNGC 1 cut(s) 32
FokI GGATG 1 cut(s) 19
Fsp4HI GCNGC 1 cut(s) 32
GluI GCNGC 1 cut(s) 32
GsuI CTGGAG 2 cut(s) 66, 121
HaeIII GGCC 3 cut(s) 273, 581, 612
Hin1II CATG 4 cut(s) 74, 175, 236, 358
HindIII AAGCTT 1 cut(s) 439
HinfI GANTC 1 cut(s) 134
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 2 cut(s) 394, 667
Hpy188I TCNGA 1 cut(s) 217
Hpy8I GTNNAC 2 cut(s) 394, 667
HpyAV CCTTC 3 cut(s) 425, 634, 658
HpyCH4III ACNGT 5 cut(s) 213, 391, 541, 571, 608
HpyCH4V TGCA 3 cut(s) 114, 232, 588
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 120, 129
HpyF3I CTNAG 3 cut(s) 367, 442, 477
Hsp92II CATG 4 cut(s) 74, 175, 236, 358
Kzo9I GATC 2 cut(s) 61, 419
LmnI GCTCC 1 cut(s) 128
Lsp1109I GCAGC 1 cut(s) 18
LweI GCATC 1 cut(s) 439
MaeIII GTNAC 1 cut(s) 43
MalI GATC 2 cut(s) 63, 421
MboI GATC 2 cut(s) 61, 419
MboII GAAGA 1 cut(s) 109
MhlI GDGCHC 2 cut(s) 70, 125
MlsI TGGCCA 2 cut(s) 273, 612
MluNI TGGCCA 2 cut(s) 273, 612
MlyI GAGTC 1 cut(s) 128
MnlI CCTC 3 cut(s) 159, 542, 545
Mox20I TGGCCA 2 cut(s) 273, 612
MscI TGGCCA 2 cut(s) 273, 612
MseI TTAA 1 cut(s) 594
Msp20I TGGCCA 2 cut(s) 273, 612
MspA1I CMGCKG 1 cut(s) 616
MspR9I CCNGG 1 cut(s) 41
MvaI CCWGG 1 cut(s) 41
MwoI GCNNNNNNNGC 3 cut(s) 74, 120, 129
NcoI CCATGG 1 cut(s) 70
NdeII GATC 2 cut(s) 61, 419
NlaIII CATG 4 cut(s) 74, 175, 236, 358
NmuCI GTSAC 1 cut(s) 43
PflFI GACNNNGTC 1 cut(s) 407
PkrI GCNGC 1 cut(s) 33
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
Psp6I CCWGG 1 cut(s) 39
PspGI CCWGG 1 cut(s) 39
PstNI CAGNNNCTG 2 cut(s) 329, 452
PsyI GACNNNGTC 1 cut(s) 407
PvuII CAGCTG 1 cut(s) 616
RsaI GTAC 1 cut(s) 523
RsaNI GTAC 1 cut(s) 522
SaqAI TTAA 1 cut(s) 594
SatI GCNGC 1 cut(s) 32
Sau3AI GATC 2 cut(s) 61, 419
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 1 cut(s) 41
SduI GDGCHC 2 cut(s) 70, 125
SetI ASST 9 cut(s) 271, 328, 344, 383, 387, 411, 443, 553, 618
SfaNI GCATC 1 cut(s) 439
SsiI CCGC 2 cut(s) 372, 628
StyD4I CCNGG 1 cut(s) 39
StyI CCWWGG 1 cut(s) 70
TaaI ACNGT 5 cut(s) 213, 391, 541, 571, 608
TaqI TCGA 1 cut(s) 418
TatI WGTACW 1 cut(s) 521
Tru1I TTAA 1 cut(s) 594
Tru9I TTAA 1 cut(s) 594
TscAI CASTG 4 cut(s) 125, 258, 438, 544
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 1 cut(s) 623
TspGWI ACGGA 1 cut(s) 491
TspRI CASTG 4 cut(s) 125, 258, 438, 544
Tth111I GACNNNGTC 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.