Rh2BG001700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0018124
Physical Location & Seq
Reverse (-)
195702 .. 196776
1075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG001700.1

Sequence Viewer

Length: 684 bp
ATGGGGAGCTACTACCACTGCCTTTCTCTCTGCCTGCTGCTTGTCCTAGTGACGACTACTTCTATTGATCGTGCCCATGGGGCAACTCCAGTCCCACATTTGAAGAGTGTTCGGCTTTGCAACCAGTGCTCCAAATGCGACTCCAGTAAATGCCCTCCAAGTGAAGCCTATCCCCACATGACAGCATTTGACAACTCTCTTATTGCTGGTGCTTTACAGTCTGACTATGTGGATTTGCATGACAAAGGAGTTTATTCAGTGCCAAATATCAAAGGTGGCCAATCAACAAAATACAATGCTTATTTTGGCTGGAAATCTACTTCTGGTTCAGCTTCTGGTTATCACAGGTTTAGCAACTACATGGACAAATGCTCGGGCGGACAAACCTACCTTACTGTGGACAAGCATGACAAGGTCAGCCTTCGATCATTGAAATCACTGGAAAGCTTAGCAGATGCTGACTGGAAGTCTTATAGTCCCCCTAAGAAACTAAATCACCACGAGTTCCGTTTCTGGGTCTCTCGCAGTACAGGAAAATGCCTCACTGTTTTTGGAGATAAAACAAAGAAACGAACTGTGGGTGTGGCCGACTGCAAGTTTAATGGCTCAAACCGTGGCCAGCTGTTTGCCTTCCGCTTTCATTACCACCAAGCCTTCTGTTGCTGTGGTGTTCACAATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

25.29

Weight (kDa)

9.09

Isoelectric Point (pI)

35.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018124)

Species Orthologous Gene IDs
prunus_persica Prupe.7G270400_v2.0.a1
pyrus_communis pycom290g00150
rosa_laevigata RLG00000015618
rosa_multiflora Rmu_sc0009404.1_g000005
rosa_roxburghii Rroxscaffold_2G00156090
rosa_rugosa Rorug01G0453900
rosa_samantha Rh2AG002000 Rh2BG001700 Rh2CG001900 Rh2DG002100
rosa_wichuraiana Rw2G000170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 378, 634
AcoI YGGCCR 3 cut(s) 277, 585, 616
AfaI GTAC 1 cut(s) 529
AfiI CCNNNNNNNGG 2 cut(s) 397, 514
AgsI TTSAA 2 cut(s) 103, 433
AhdI GACNNNNNGTC 1 cut(s) 466
AluBI AGCT 4 cut(s) 9, 332, 447, 622
AluI AGCT 4 cut(s) 9, 332, 447, 622
Alw21I GWGCWC 1 cut(s) 131
Alw26I GTCTC 1 cut(s) 523
AlwNI CAGNNNCTG 2 cut(s) 335, 458
Ama87I CYCGRG 1 cut(s) 373
AoxI GGCC 3 cut(s) 277, 585, 616
ApeKI GCWGC 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 488
AvaI CYCGRG 1 cut(s) 373
BaeGI GKGCMC 1 cut(s) 76
BalI TGGCCA 2 cut(s) 279, 618
BauI CACGAG 1 cut(s) 500
Bbv12I GWGCWC 1 cut(s) 131
BbvI GCAGC 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 523
BfaI CTAG 1 cut(s) 47
BglI GCCNNNNNGGC 1 cut(s) 80
BisI GCNGC 1 cut(s) 38
BlpI GCTNAGC 1 cut(s) 448
BlsI GCNGC 1 cut(s) 39
BmeRI GACNNNNNGTC 1 cut(s) 466
BmeT110I CYCGRG 1 cut(s) 373
BmsI GCATC 1 cut(s) 445
BpmI CTGGAG 2 cut(s) 72, 127
Bpu1102I GCTNAGC 1 cut(s) 448
BsaI GGTCTC 1 cut(s) 523
BsaJI CCNNGG 2 cut(s) 76, 613
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 2 cut(s) 397, 514
Bse1I ACTGG 5 cut(s) 89, 124, 144, 444, 467
BseDI CCNNGG 2 cut(s) 76, 613
BseLI CCNNNNNNNGG 2 cut(s) 397, 514
BseNI ACTGG 5 cut(s) 89, 124, 144, 444, 467
BseSI GKGCMC 1 cut(s) 76
BseXI GCAGC 1 cut(s) 24
BshFI GGCC 3 cut(s) 279, 587, 618
BsiHKAI GWGCWC 1 cut(s) 131
BsiHKCI CYCGRG 1 cut(s) 373
BslFI GGGAC 2 cut(s) 77, 462
BslI CCNNNNNNNGG 2 cut(s) 397, 514
BsmAI GTCTC 1 cut(s) 523
BsmFI GGGAC 2 cut(s) 77, 462
BsnI GGCC 3 cut(s) 279, 587, 618
Bso31I GGTCTC 1 cut(s) 523
BsoBI CYCGRG 1 cut(s) 373
Bsp1286I GDGCHC 2 cut(s) 76, 131
Bsp143I GATC 2 cut(s) 67, 425
Bsp1720I GCTNAGC 1 cut(s) 448
Bsp19I CCATGG 1 cut(s) 76
BspACI CCGC 2 cut(s) 378, 634
BspANI GGCC 3 cut(s) 279, 587, 618
BspTNI GGTCTC 1 cut(s) 523
BsrI ACTGG 5 cut(s) 89, 124, 144, 444, 467
BssECI CCNNGG 2 cut(s) 76, 613
BssMI GATC 2 cut(s) 67, 425
BssSI CACGAG 1 cut(s) 500
BssT1I CCWWGG 1 cut(s) 76
Bst2BI CACGAG 1 cut(s) 500
Bst4CI ACNGT 5 cut(s) 219, 397, 547, 577, 614
Bst6I CTCTTC 1 cut(s) 98
BstAPI GCANNNNNTGC 1 cut(s) 126
BstC8I GCNNGC 2 cut(s) 35, 620
BstDEI CTNAG 2 cut(s) 448, 483
BstDSI CCRYGG 2 cut(s) 76, 613
BstKTI GATC 2 cut(s) 70, 428
BstMAI GTCTC 1 cut(s) 523
BstMBI GATC 2 cut(s) 67, 425
BstMWI GCNNNNNNNGC 3 cut(s) 80, 126, 135
BstSLI GKGCMC 1 cut(s) 76
BstV1I GCAGC 1 cut(s) 24
BsuRI GGCC 3 cut(s) 279, 587, 618
BtgI CCRYGG 2 cut(s) 76, 613
BtsI GCAGTG 1 cut(s) 16
BtsIMutI CAGTG 5 cut(s) 16, 131, 264, 437, 543
Cac8I GCNNGC 2 cut(s) 35, 620
CaiI CAGNNNCTG 2 cut(s) 335, 458
Csp6I GTAC 1 cut(s) 528
CviAII CATG 5 cut(s) 77, 178, 239, 361, 407
CviQI GTAC 1 cut(s) 528
DdeI CTNAG 2 cut(s) 448, 483
DpnI GATC 2 cut(s) 69, 427
DpnII GATC 2 cut(s) 67, 425
DriI GACNNNNNGTC 1 cut(s) 466
EaeI YGGCCR 3 cut(s) 277, 585, 616
Eam1104I CTCTTC 1 cut(s) 98
Eam1105I GACNNNNNGTC 1 cut(s) 466
EarI CTCTTC 1 cut(s) 98
EciI GGCGGA 1 cut(s) 393
Eco130I CCWWGG 1 cut(s) 76
Eco31I GGTCTC 1 cut(s) 523
Eco88I CYCGRG 1 cut(s) 373
EcoT14I CCWWGG 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 76
FaeI CATG 5 cut(s) 80, 181, 242, 364, 410
FaiI YATR 7 cut(s) 78, 179, 228, 240, 362, 408, 474
FaqI GGGAC 2 cut(s) 77, 462
FatI CATG 5 cut(s) 76, 177, 238, 360, 406
Fnu4HI GCNGC 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 38
FspBI CTAG 1 cut(s) 47
GluI GCNGC 1 cut(s) 38
GsuI CTGGAG 2 cut(s) 72, 127
HaeIII GGCC 3 cut(s) 279, 587, 618
Hin1II CATG 5 cut(s) 80, 181, 242, 364, 410
HindIII AAGCTT 1 cut(s) 445
HinfI GANTC 1 cut(s) 140
HphI GGTGA 1 cut(s) 488
Hpy166II GTNNAC 2 cut(s) 400, 673
Hpy188I TCNGA 1 cut(s) 223
Hpy8I GTNNAC 2 cut(s) 400, 673
HpyAV CCTTC 3 cut(s) 431, 640, 664
HpyCH4III ACNGT 5 cut(s) 219, 397, 547, 577, 614
HpyCH4V TGCA 3 cut(s) 120, 238, 594
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 126, 135
HpyF3I CTNAG 2 cut(s) 448, 483
Hsp92II CATG 5 cut(s) 80, 181, 242, 364, 410
Kzo9I GATC 2 cut(s) 67, 425
LmnI GCTCC 2 cut(s) 6, 134
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 1 cut(s) 445
MaeI CTAG 1 cut(s) 47
MaeIII GTNAC 1 cut(s) 49
MalI GATC 2 cut(s) 69, 427
MboI GATC 2 cut(s) 67, 425
MboII GAAGA 1 cut(s) 115
MhlI GDGCHC 2 cut(s) 76, 131
MlsI TGGCCA 2 cut(s) 279, 618
MluNI TGGCCA 2 cut(s) 279, 618
MlyI GAGTC 1 cut(s) 134
MnlI CCTC 2 cut(s) 165, 551
Mox20I TGGCCA 2 cut(s) 279, 618
MscI TGGCCA 2 cut(s) 279, 618
MseI TTAA 1 cut(s) 600
Msp20I TGGCCA 2 cut(s) 279, 618
MspA1I CMGCKG 1 cut(s) 622
MwoI GCNNNNNNNGC 3 cut(s) 80, 126, 135
NcoI CCATGG 1 cut(s) 76
NdeII GATC 2 cut(s) 67, 425
NlaIII CATG 5 cut(s) 80, 181, 242, 364, 410
NmuCI GTSAC 1 cut(s) 49
PflFI GACNNNGTC 1 cut(s) 413
PkrI GCNGC 1 cut(s) 39
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
PstNI CAGNNNCTG 2 cut(s) 335, 458
PsyI GACNNNGTC 1 cut(s) 413
PvuII CAGCTG 1 cut(s) 622
RsaI GTAC 1 cut(s) 529
RsaNI GTAC 1 cut(s) 528
SaqAI TTAA 1 cut(s) 600
SatI GCNGC 1 cut(s) 38
Sau3AI GATC 2 cut(s) 67, 425
SchI GAGTC 1 cut(s) 134
SduI GDGCHC 2 cut(s) 76, 131
SetI ASST 9 cut(s) 11, 277, 334, 350, 389, 393, 417, 449, 624
SfaNI GCATC 1 cut(s) 445
SsiI CCGC 2 cut(s) 378, 634
SspMI CTAG 1 cut(s) 47
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 5 cut(s) 219, 397, 547, 577, 614
TaqI TCGA 1 cut(s) 424
TatI WGTACW 1 cut(s) 527
Tru1I TTAA 1 cut(s) 600
Tru9I TTAA 1 cut(s) 600
TscAI CASTG 5 cut(s) 23, 131, 264, 444, 550
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 1 cut(s) 37
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 1 cut(s) 629
TspGWI ACGGA 1 cut(s) 497
TspRI CASTG 5 cut(s) 23, 131, 264, 444, 550
Tth111I GACNNNGTC 1 cut(s) 413
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.