Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012621

Physical Location & Seq

Genomic Coordinates Forward (+)

2182752 .. 2185376

Gene Structure 2625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTCTGACACGTTCTGCCAAGCGTGCAAGTGTTTCACGGAGGTTGTTGTCTCCGACCACGCGACCGGCGGCACCTCATCGTGCTCCGAATGTGGGACTGTTGTGGTGGACGAGGTTCCCGAGTGGGTTTCTGTCCACGACCGGGAAGACCCGACCCGGGAGCCCAGCAAGCCGGTTGGACCCGAGAGTGGGGTTTCCGGGTCCAATGGAGCAGCAGCCTCCGACGACGAGGAGGCATCGCAGGCGCGGCGGGGGAAGCGGCGGAGGAGGCCACGCCCTCCGCCTTTTGACTGGTTTGGCTCTATTGCTGCCGTGTCTGACAGGTTGGGAATTGTTGCTGCCATAAAGGATCGAGCCAATGAGATATATAAGAAGGTGGTTGATCAGAAGCCTCTCAAATTTAGGACTCCGGATGCAGTTGTGGCTGCTTGCGTCTACATTGCCTGTAGACAAGAAAATAAGCCCCGTACTGTGAAAGAGATGTGCTCAGCAAATGGAGCTACCAAGAAAGAAGTTGCCAGGGCAAAAGACTTCATCATGAAATACTTGGAGACTGAGGGTCAGGAAATAGGAACTATTCATGCTGCAGACTTTCTGAGACGTTTTTGTTCCGTTCTTGGAATGTCAAATATAGAAGTCATGGCTGCCCAAGAAACAGTGAAGAAATCTGAAGAACTTGTTTTAAGGAGGAGCCCAATATCGCTGGCAGCTGTTGTCATTTATATCATAACTCAACTATCAAATGACAAAAAGGGTGTTAAAGATATTGCGTTTGTCACTAGAGTGGCCGAAGCGACCATAAAAAATTCGTACAAAGATCTGTATCCTCATCTGTCAGAGGTTATACCAACCTGGTTTGCCAAGGAGGAAGATTTGAGGCAGCTGCCACCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

TFIIB TF_Zn_Ribbon

Protein Analysis

298

Amino Acids

32.84

Weight (kDa)

7.51

Isoelectric Point (pI)

53.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIIB	PF00382	101 - 173	2.6e-16	Transcription factor TFIIB repeat
TFIIB	PF00382	192 - 276	8.5e-12	Transcription factor TFIIB repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012621)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15880 FvH4_5g15880 FvH4_5g15880 FvH4_5g15880 FvH4_5g15880 FvH4_5g15880
rosa_chinensis	RchiOBHm_Chr7g0180171
rosa_laevigata	RLG00000005285
rosa_multiflora	Rmu_ssc0000119.1_g000040
rosa_roxburghii	Rroxscaffold_3G00273060
rosa_rugosa	Rorug06G0431200 Rorug06G0431300 Rorug06G0431400 Rorug06G0431500
rosa_samantha	Rh7AG031700 Rh7BG031700 Rh7CG033500 Rh7DG032100
rosa_wichuraiana	Rw7G002640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AccI	GTMKAC	2 cut(s)	435, 448
AccII	CGCG	2 cut(s)	62, 247
AccIII	TCCGGA	1 cut(s)	409
AciI	CCGC	6 cut(s)	69, 247, 250, 259, 262, 281
AclWI	GGATC	1 cut(s)	357
AcoI	YGGCCR	1 cut(s)	786
AcsI	RAATTY	2 cut(s)	398, 805
AcuI	CTGAAG	1 cut(s)	690
AfaI	GTAC	2 cut(s)	469, 812
AfiI	CCNNNNNNNGG	5 cut(s)	93, 142, 157, 188, 189
AflIII	ACRYGT	1 cut(s)	9
AhdI	GACNNNNNGTC	1 cut(s)	558
AjnI	CCWGG	2 cut(s)	518, 851
AleI	CACNNNNGTG	1 cut(s)	782
AluBI	AGCT	4 cut(s)	500, 710, 883, 893
AluI	AGCT	4 cut(s)	500, 710, 883, 893
Alw21I	GWGCWC	2 cut(s)	86, 488
Alw26I	GTCTC	3 cut(s)	55, 545, 592
AlwI	GGATC	1 cut(s)	357
Ama87I	CYCGRG	3 cut(s)	119, 156, 182
Aor13HI	TCCGGA	1 cut(s)	409
AoxI	GGCC	2 cut(s)	269, 786
ApoI	RAATTY	2 cut(s)	398, 805
AspLEI	GCGC	1 cut(s)	247
AspS9I	GGNCC	2 cut(s)	179, 201
AsuC2I	CCSGG	4 cut(s)	143, 157, 158, 199
AvaI	CYCGRG	3 cut(s)	119, 156, 182
AvaII	GGWCC	2 cut(s)	179, 201
BanI	GGYRCC	1 cut(s)	71
BanII	GRGCYC	2 cut(s)	165, 695
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	2 cut(s)	86, 488
BceAI	ACGGC	1 cut(s)	296
BciT130I	CCWGG	2 cut(s)	520, 853
BciVI	GTATCC	1 cut(s)	834
BclI	TGATCA	1 cut(s)	382
BcnI	CCSGG	4 cut(s)	143, 157, 158, 199
BcoDI	GTCTC	3 cut(s)	55, 545, 592
BfaI	CTAG	1 cut(s)	780
BfmI	CTRYAG	2 cut(s)	445, 585
BfuI	GTATCC	1 cut(s)	834
BglII	AGATCT	1 cut(s)	817
BlpI	GCTNAGC	1 cut(s)	487
Bme1390I	CCNGG	6 cut(s)	143, 157, 158, 199, 520, 853
Bme18I	GGWCC	2 cut(s)	179, 201
BmeRI	GACNNNNNGTC	1 cut(s)	558
BmeT110I	CYCGRG	3 cut(s)	119, 156, 182
BmgT120I	GGNCC	2 cut(s)	179, 201
BmiI	GGNNCC	6 cut(s)	73, 117, 162, 181, 202, 692
BmrFI	CCNGG	6 cut(s)	143, 157, 158, 199, 520, 853
BmsI	GCATC	2 cut(s)	245, 403
BpiI	GAAGAC	1 cut(s)	153
BplI	GAGNNNNNCTC	2 cut(s)	470, 502
Bpu1102I	GCTNAGC	1 cut(s)	487
BpuMI	CCSGG	4 cut(s)	143, 157, 158, 199
BsaBI	GATNNNNATC	1 cut(s)	822
BsaJI	CCNNGG	3 cut(s)	156, 519, 861
BsaWI	WCCGGW	1 cut(s)	409
Bsc4I	CCNNNNNNNGG	5 cut(s)	93, 142, 157, 188, 189
Bse118I	RCCGGY	2 cut(s)	65, 172
Bse1I	ACTGG	1 cut(s)	296
Bse3DI	GCAATG	1 cut(s)	438
Bse8I	GATNNNNATC	1 cut(s)	822
BseAI	TCCGGA	1 cut(s)	409
BseBI	CCWGG	2 cut(s)	520, 853
BseDI	CCNNGG	3 cut(s)	156, 519, 861
BseGI	GGATG	1 cut(s)	418
BseJI	GATNNNNATC	1 cut(s)	822
BseLI	CCNNNNNNNGG	5 cut(s)	93, 142, 157, 188, 189
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	3 cut(s)	501, 546, 587
BseNI	ACTGG	1 cut(s)	296
BseRI	GAGGAG	3 cut(s)	245, 280, 703
BseYI	CCCAGC	1 cut(s)	164
Bsh1236I	CGCG	2 cut(s)	62, 247
Bsh1285I	CGRYCG	2 cut(s)	66, 142
BshFI	GGCC	2 cut(s)	271, 788
BshNI	GGYRCC	1 cut(s)	71
BsiEI	CGRYCG	2 cut(s)	66, 142
BsiHKAI	GWGCWC	2 cut(s)	86, 488
BsiHKCI	CYCGRG	3 cut(s)	119, 156, 182
BsiSI	CCGG	6 cut(s)	66, 142, 157, 173, 198, 410
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	5 cut(s)	93, 142, 157, 188, 189
BsmAI	GTCTC	3 cut(s)	55, 545, 592
BsmBI	CGTCTC	1 cut(s)	592
BsmFI	GGGAC	1 cut(s)	109
BsnI	GGCC	2 cut(s)	271, 788
BsoBI	CYCGRG	3 cut(s)	119, 156, 182
Bsp1286I	GDGCHC	4 cut(s)	86, 165, 488, 695
Bsp13I	TCCGGA	1 cut(s)	409
Bsp143I	GATC	3 cut(s)	349, 382, 817
Bsp1720I	GCTNAGC	1 cut(s)	487
BspACI	CCGC	6 cut(s)	69, 247, 250, 259, 262, 281
BspANI	GGCC	2 cut(s)	271, 788
BspCNI	CTCAG	3 cut(s)	500, 547, 588
BspEI	TCCGGA	1 cut(s)	409
BspFNI	CGCG	2 cut(s)	62, 247
BspHI	TCATGA	1 cut(s)	537
BspLI	GGNNCC	6 cut(s)	73, 117, 162, 181, 202, 692
BspMAI	CTGCAG	1 cut(s)	589
BspPI	GGATC	1 cut(s)	357
BspT107I	GGYRCC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	438
BsrFI	RCCGGY	2 cut(s)	65, 172
BsrI	ACTGG	1 cut(s)	296
BssAI	RCCGGY	2 cut(s)	65, 172
BssECI	CCNNGG	3 cut(s)	156, 519, 861
BssMI	GATC	3 cut(s)	349, 382, 817
BssT1I	CCWWGG	1 cut(s)	861
Bst2UI	CCWGG	2 cut(s)	520, 853
Bst4CI	ACNGT	3 cut(s)	100, 472, 658
BstC8I	GCNNGC	5 cut(s)	25, 170, 243, 430, 705
BstDEI	CTNAG	3 cut(s)	487, 555, 596
BstF5I	GGATG	1 cut(s)	418
BstFNI	CGCG	2 cut(s)	62, 247
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	3 cut(s)	352, 385, 820
BstMAI	GTCTC	3 cut(s)	55, 545, 592
BstMBI	GATC	3 cut(s)	349, 382, 817
BstMCI	CGRYCG	2 cut(s)	66, 142
BstMWI	GCNNNNNNNGC	8 cut(s)	24, 169, 242, 247, 256, 268, 422, 497
BstNI	CCWGG	2 cut(s)	520, 853
BstSCI	CCNGG	6 cut(s)	141, 155, 156, 197, 518, 851
BstSFI	CTRYAG	2 cut(s)	445, 585
BstUI	CGCG	2 cut(s)	62, 247
BstV2I	GAAGAC	1 cut(s)	153
BstX2I	RGATCY	1 cut(s)	817
BstYI	RGATCY	1 cut(s)	817
BsuI	GTATCC	1 cut(s)	834
BsuRI	GGCC	2 cut(s)	271, 788
BtgZI	GCGATG	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	418
BtsIMutI	CAGTG	1 cut(s)	663
Cac8I	GCNNGC	5 cut(s)	25, 170, 243, 430, 705
CciI	TCATGA	1 cut(s)	537
CfoI	GCGC	1 cut(s)	247
Cfr10I	RCCGGY	2 cut(s)	65, 172
Cfr13I	GGNCC	2 cut(s)	179, 201
Cfr9I	CCCGGG	1 cut(s)	156
CseI	GACGC	1 cut(s)	421
CsiI	ACCWGGT	1 cut(s)	851
Csp6I	GTAC	2 cut(s)	468, 811
CviAII	CATG	3 cut(s)	538, 581, 640
CviQI	GTAC	2 cut(s)	468, 811
DdeI	CTNAG	3 cut(s)	487, 555, 596
DpnI	GATC	3 cut(s)	351, 384, 819
DpnII	GATC	3 cut(s)	349, 382, 817
DriI	GACNNNNNGTC	1 cut(s)	558
EaeI	YGGCCR	1 cut(s)	786
Eam1105I	GACNNNNNGTC	1 cut(s)	558
EciI	GGCGGA	2 cut(s)	270, 277
Eco130I	CCWWGG	1 cut(s)	861
Eco24I	GRGCYC	2 cut(s)	165, 695
Eco47I	GGWCC	2 cut(s)	179, 201
Eco57I	CTGAAG	1 cut(s)	690
Eco88I	CYCGRG	3 cut(s)	119, 156, 182
EcoRII	CCWGG	2 cut(s)	518, 851
EcoT14I	CCWWGG	1 cut(s)	861
EcoT38I	GRGCYC	2 cut(s)	165, 695
ErhI	CCWWGG	1 cut(s)	861
Esp3I	CGTCTC	1 cut(s)	592
FaeI	CATG	3 cut(s)	541, 584, 643
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	3 cut(s)	537, 580, 639
FauI	CCCGC	1 cut(s)	243
FbaI	TGATCA	1 cut(s)	382
FblI	GTMKAC	2 cut(s)	435, 448
FokI	GGATG	1 cut(s)	425
FriOI	GRGCYC	2 cut(s)	165, 695
FspBI	CTAG	1 cut(s)	780
GlaI	GCGC	1 cut(s)	246
GsaI	CCCAGC	1 cut(s)	168
HaeIII	GGCC	2 cut(s)	271, 788
HapII	CCGG	6 cut(s)	66, 142, 157, 173, 198, 410
HgaI	GACGC	1 cut(s)	421
HhaI	GCGC	1 cut(s)	247
Hin1II	CATG	3 cut(s)	541, 584, 643
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HinfI	GANTC	1 cut(s)	406
HpaII	CCGG	6 cut(s)	66, 142, 157, 173, 198, 410
Hpy166II	GTNNAC	4 cut(s)	109, 136, 436, 449
Hpy188I	TCNGA	9 cut(s)	7, 55, 88, 223, 319, 387, 597, 670, 838
Hpy188III	TCNNGA	4 cut(s)	119, 410, 538, 563
Hpy8I	GTNNAC	4 cut(s)	109, 136, 436, 449
Hpy99I	CGWCG	2 cut(s)	227, 230
HpyAV	CCTTC	1 cut(s)	367
HpyCH4III	ACNGT	3 cut(s)	100, 472, 658
HpyCH4IV	ACGT	2 cut(s)	11, 601
HpyCH4V	TGCA	3 cut(s)	27, 416, 587
HpyF10VI	GCNNNNNNNGC	8 cut(s)	24, 169, 242, 247, 256, 268, 422, 497
HpyF3I	CTNAG	3 cut(s)	487, 555, 596
HpySE526I	ACGT	2 cut(s)	11, 601
Hsp92II	CATG	3 cut(s)	541, 584, 643
HspAI	GCGC	1 cut(s)	245
Kpn2I	TCCGGA	1 cut(s)	409
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	3 cut(s)	349, 382, 817
LmnI	GCTCC	5 cut(s)	89, 160, 209, 497, 690
LweI	GCATC	2 cut(s)	245, 403
MabI	ACCWGGT	1 cut(s)	851
MaeI	CTAG	1 cut(s)	780
MaeII	ACGT	2 cut(s)	11, 601
MaeIII	GTNAC	1 cut(s)	775
MalI	GATC	3 cut(s)	351, 384, 819
MboI	GATC	3 cut(s)	349, 382, 817
MboII	GAAGA	4 cut(s)	158, 673, 683, 881
MflI	RGATCY	1 cut(s)	817
MhlI	GDGCHC	4 cut(s)	86, 165, 488, 695
MluCI	AATT	3 cut(s)	330, 398, 805
MlyI	GAGTC	1 cut(s)	400
MmeI	TCCRAC	3 cut(s)	78, 157, 246
MroI	TCCGGA	1 cut(s)	409
MseI	TTAA	3 cut(s)	683, 759, 895
MslI	CAYNNNNRTG	1 cut(s)	782
MspA1I	CMGCKG	2 cut(s)	710, 883
MspI	CCGG	6 cut(s)	66, 142, 157, 173, 198, 410
MspR9I	CCNGG	6 cut(s)	143, 157, 158, 199, 520, 853
MvaI	CCWGG	2 cut(s)	520, 853
MvnI	CGCG	2 cut(s)	62, 247
MwoI	GCNNNNNNNGC	8 cut(s)	24, 169, 242, 247, 256, 268, 422, 497
NciI	CCSGG	4 cut(s)	143, 157, 158, 199
NdeII	GATC	3 cut(s)	349, 382, 817
NlaIII	CATG	3 cut(s)	541, 584, 643
NlaIV	GGNNCC	6 cut(s)	73, 117, 162, 181, 202, 692
NmuCI	GTSAC	1 cut(s)	775
OliI	CACNNNNGTG	1 cut(s)	782
PagI	TCATGA	1 cut(s)	537
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PleI	GAGTC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	400
Psp6I	CCWGG	2 cut(s)	518, 851
PspFI	CCCAGC	1 cut(s)	164
PspGI	CCWGG	2 cut(s)	518, 851
PspN4I	GGNNCC	6 cut(s)	73, 117, 162, 181, 202, 692
PspPI	GGNCC	2 cut(s)	179, 201
PstI	CTGCAG	1 cut(s)	589
PsuI	RGATCY	1 cut(s)	817
PvuII	CAGCTG	2 cut(s)	710, 883
RsaI	GTAC	2 cut(s)	469, 812
RsaNI	GTAC	2 cut(s)	468, 811
RseI	CAYNNNNRTG	1 cut(s)	782
SaqAI	TTAA	3 cut(s)	683, 759, 895
Sau3AI	GATC	3 cut(s)	349, 382, 817
Sau96I	GGNCC	2 cut(s)	179, 201
SchI	GAGTC	1 cut(s)	400
ScrFI	CCNGG	6 cut(s)	143, 157, 158, 199, 520, 853
SduI	GDGCHC	4 cut(s)	86, 165, 488, 695
SexAI	ACCWGGT	1 cut(s)	851
SfaNI	GCATC	2 cut(s)	245, 403
SfcI	CTRYAG	2 cut(s)	445, 585
SinI	GGWCC	2 cut(s)	179, 201
SmaI	CCCGGG	1 cut(s)	158
SmiMI	CAYNNNNRTG	1 cut(s)	782
Sse9I	AATT	3 cut(s)	330, 398, 805
SsiI	CCGC	6 cut(s)	69, 247, 250, 259, 262, 281
SspMI	CTAG	1 cut(s)	780
StyD4I	CCNGG	6 cut(s)	141, 155, 156, 197, 518, 851
StyI	CCWWGG	1 cut(s)	861
TaaI	ACNGT	3 cut(s)	100, 472, 658
TaiI	ACGT	2 cut(s)	14, 604
TaqI	TCGA	1 cut(s)	352
TasI	AATT	3 cut(s)	330, 398, 805
TauI	GCSGC	3 cut(s)	72, 250, 262
Tru1I	TTAA	3 cut(s)	683, 759, 895
Tru9I	TTAA	3 cut(s)	683, 759, 895
TscAI	CASTG	1 cut(s)	663
TseFI	GTSAC	1 cut(s)	775
Tsp45I	GTSAC	1 cut(s)	775
TspDTI	ATGAA	3 cut(s)	523, 554, 569
TspGWI	ACGGA	2 cut(s)	53, 601
TspMI	CCCGGG	1 cut(s)	156
TspRI	CASTG	1 cut(s)	663
VpaK11BI	GGWCC	2 cut(s)	179, 201
XapI	RAATTY	2 cut(s)	398, 805
XmaI	CCCGGG	1 cut(s)	156
XmiI	GTMKAC	2 cut(s)	435, 448
XspI	CTAG	1 cut(s)	780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.