RchiOBHm_Chr7g0192411

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0017302
Physical Location & Seq
Forward (+)
10919689 .. 10922008
2320 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1686 bp
ATGAACGATATGTTCTTTGGCACCGTCAGCTCTGAGACCAAATCTTATAACTTGACCGGAGACCTAGACGACTACAAGGAAGACAGTCCTAATACCAGCACCCCCACTACTCCTACTAGTTCTACCAGCACTCCTACTAGTGCTACTACTACGACAACTAGTAATAGCAAAATGACTCAAGAATGGCTAGAAGAGGCTAGGCGCATTGTTGCGTCTTCCCCTTCCCGCAGTAACTCACCTTCTCGGTTAGCTACAGGCTCACCGAGGTTCGCAGCATCCCCGGGCCAGGCTGCTAGGTTATCCCTCTCTTCGGCACTTGATCGCAGAGACCCGCTCTCTAGGTCTGCTAGAAGGCATAGAAACCCAGAGAGCTTGAGCGGAGAGATACTATCGAAGACCACAGCGAAGCACAGCCGGAACAAGTCGGAAGTAGCACAAGATACACCAACTTCGCCTGCTTCGCCACAAGATGCTTCCCCTGCTGCAGCGGTACACAAATGGTTTTCCAATATCCTCAAGCCCTCTAATCAGGCTCAAGTACCCAGCCAGCCACAGCCAAATTCCGATCCTATCCCTCAAGTTGTTCCTCCGCGCCAACCAGGGCCGCGTAGGTCGCGGTTCCAAAACGATCCTTCCTCACCTCGCCCGCATGGGATCCCTGTCCCTTCCCGCCGGACCTTCCAAAGCCCGTCAGCAACACCTGACAATAATAAGCTGCTCTCTCCACCCAAAAACCTTGTTCCTTCGGCCCACCGGAGGTCCATATCGTCGTCTACTTGCTCTATCGAGAAGGCAGCGGTAAAGTCTGATCCAGTGGGTTGGCCTAAGGATGCAGCTCAAGCACAAGATCAAGGAGGAGGCATTGATGATCTCAATGGGTTTCTCAAAGAGCAAAGGACTAAAATTCAGAAAGTTTTGGATGGTCAAGTTAATTCCAAGGCTAGAATCGTACTTTCCGATCCCTCAAATAGTAAGTATTTGCAAGTTCAACCGACTAGGATGTTGAGTACAAGTACAATGGTGGCAGCAATATGTTATGCATGGCTATTGGAGAACAGAGCGAGGAAGGAAAATAAGAATAGTAAAGCAGGGAATGTTAACGATGATGAGGTGCAGTATGTTGTGGTTCCTGTGATGAATGTGAAGAGAGGGAGGATGTGGAAGCAAAGAGAGGCTGCTTGGCTATTTTACCATGTTGGCCTTGATGTCAGTTCTTTGCTCTTTTCTGATGAAGTGGATTTAGAGAGTCTAATGATGACTGGGAAGTTGAACATCCTTGTAACAGGGCAAGATGTCCTGAGAAATAACGGCGAGGTTGGATCTCAGTGCACCATTCTTACGGATAATTACTGTGAAGATGCCTATGATCTACTTGATACCCCTTTGCTCAAGAAACTCCTGCTTGCAGGTATATTATTAGACACTCAAAATTTGAAAGCATCAGTTCAACTGCCTATGACAAGAGACGCAGAGGCAGTTCAGTTGCTATTAGTTGGCTTGCCATCCAATTACCGGAATGCACTCTTCGATCAATTGACACAATATCAGGGAGACAGTTCCTTTCTTGAGGCTTTGAGGCAAAATTATGGGAAGTCTCCTAATGAAAGTGAGCTAACTCATATACACCCCAGCTTTATTTACATTAGGGTCATTAGTTCACTAGAATCCTTGACAACCTTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

561

Amino Acids

61.61

Weight (kDa)

8.93

Isoelectric Point (pI)

59.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017302)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g06391
malus_domestica MD14G1170500.v1.1
prunus_persica Prupe.5G164600_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0192411
rosa_laevigata RLG00000004370
rosa_multiflora Rmu_sc0003108.1_g000023
rosa_roxburghii Rroxscaffold_3G00263030
rosa_rugosa Rorug07G0001500
rosa_samantha Rh7AG125200 Rh7BG127500 Rh7CG129200 Rh7DG129300
rosa_wichuraiana Rw7G010780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 48
Acc36I ACCTGC 1 cut(s) 1397
AccB1I GGYRCC 1 cut(s) 20
AccBSI CCGCTC 2 cut(s) 334, 378
AccI GTMKAC 1 cut(s) 773
AccII CGCG 3 cut(s) 592, 607, 616
AclWI GGATC 7 cut(s) 560, 623, 649, 662, 803, 953, 1327
AcsI RAATTY 3 cut(s) 559, 903, 1429
AfaI GTAC 5 cut(s) 492, 540, 951, 1009, 1015
AfiI CCNNNNNNNGG 4 cut(s) 286, 310, 756, 1512
AgsI TTSAA 4 cut(s) 989, 1270, 1435, 1448
AhlI ACTAGT 3 cut(s) 116, 137, 158
AjnI CCWGG 2 cut(s) 285, 598
AluBI AGCT 7 cut(s) 30, 251, 372, 715, 836, 1612, 1632
AluI AGCT 7 cut(s) 30, 251, 372, 715, 836, 1612, 1632
Alw21I GWGCWC 1 cut(s) 1331
Alw26I GTCTC 6 cut(s) 29, 54, 321, 1458, 1545, 1599
Alw44I GTGCAC 1 cut(s) 1327
AlwI GGATC 7 cut(s) 560, 623, 649, 662, 803, 953, 1327
Ama87I CYCGRG 1 cut(s) 280
AoxI GGCC 5 cut(s) 283, 602, 747, 821, 1198
ApaLI GTGCAC 1 cut(s) 1327
ApeKI GCWGC 9 cut(s) 272, 290, 482, 485, 715, 794, 833, 1025, 1175
ApoI RAATTY 3 cut(s) 559, 903, 1429
AspLEI GCGC 2 cut(s) 204, 594
AspS9I GGNCC 5 cut(s) 283, 602, 675, 748, 759
AsuC2I CCSGG 2 cut(s) 281, 282
AsuHPI GGTGA 3 cut(s) 228, 252, 630
AvaI CYCGRG 1 cut(s) 280
AvaII GGWCC 2 cut(s) 675, 759
AxyI CCTNAGG 1 cut(s) 825
BaeGI GKGCMC 1 cut(s) 1331
BamHI GGATCC 1 cut(s) 654
BanI GGYRCC 1 cut(s) 20
BarI GAAGNNNNNNTAC 2 cut(s) 223, 255
BbsI GAAGAC 3 cut(s) 87, 207, 401
Bbv12I GWGCWC 1 cut(s) 1331
BbvI GCAGC 9 cut(s) 277, 284, 469, 497, 702, 806, 845, 1037, 1162
BccI CCATC 2 cut(s) 914, 1510
BceAI ACGGC 1 cut(s) 1324
BciT130I CCWGG 2 cut(s) 287, 600
BcnI CCSGG 2 cut(s) 281, 282
BcoDI GTCTC 6 cut(s) 29, 54, 321, 1458, 1545, 1599
BcuI ACTAGT 3 cut(s) 116, 137, 158
BfmI CTRYAG 2 cut(s) 252, 483
BfuAI ACCTGC 1 cut(s) 1397
Bme1390I CCNGG 4 cut(s) 281, 282, 287, 600
Bme18I GGWCC 2 cut(s) 675, 759
BmeT110I CYCGRG 1 cut(s) 280
BmgT120I GGNCC 5 cut(s) 283, 602, 675, 748, 759
BmiI GGNNCC 4 cut(s) 22, 620, 656, 1128
BmrFI CCNGG 4 cut(s) 281, 282, 287, 600
BmrI ACTGGG 1 cut(s) 1269
BmsI GCATC 5 cut(s) 284, 460, 820, 1348, 1448
BmuI ACTGGG 1 cut(s) 1269
BpiI GAAGAC 3 cut(s) 87, 207, 401
BplI GAGNNNNNCTC 2 cut(s) 318, 350
BpuEI CTTGAG 8 cut(s) 162, 394, 500, 519, 561, 822, 1373, 1586
BpuMI CCSGG 2 cut(s) 281, 282
BsaI GGTCTC 3 cut(s) 29, 54, 321
BsaJI CCNNGG 5 cut(s) 263, 279, 280, 599, 936
BsaWI WCCGGW 3 cut(s) 56, 753, 1512
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 4 cut(s) 286, 310, 756, 1512
Bse1I ACTGG 2 cut(s) 812, 1264
Bse21I CCTNAGG 1 cut(s) 825
BseBI CCWGG 2 cut(s) 287, 600
BseDI CCNNGG 5 cut(s) 263, 279, 280, 599, 936
BseGI GGATG 7 cut(s) 275, 835, 925, 1005, 1161, 1272, 1502
BseLI CCNNNNNNNGG 4 cut(s) 286, 310, 756, 1512
BseMII CTCAG 3 cut(s) 24, 1289, 1337
BseNI ACTGG 2 cut(s) 812, 1264
BseRI GAGGAG 1 cut(s) 870
BseSI GKGCMC 1 cut(s) 1331
BseXI GCAGC 9 cut(s) 277, 284, 469, 497, 702, 806, 845, 1037, 1162
BseYI CCCAGC 2 cut(s) 542, 1628
BsgI GTGCAG 1 cut(s) 1133
Bsh1236I CGCG 3 cut(s) 592, 607, 616
BshFI GGCC 5 cut(s) 285, 604, 749, 823, 1200
BshNI GGYRCC 1 cut(s) 20
BsiHKAI GWGCWC 1 cut(s) 1331
BsiHKCI CYCGRG 1 cut(s) 280
BsiSI CCGG 6 cut(s) 57, 281, 415, 673, 754, 1513
BslFI GGGAC 1 cut(s) 647
BslI CCNNNNNNNGG 4 cut(s) 286, 310, 756, 1512
BsmAI GTCTC 6 cut(s) 29, 54, 321, 1458, 1545, 1599
BsmBI CGTCTC 1 cut(s) 1458
BsmFI GGGAC 1 cut(s) 647
BsmI GAATGC 1 cut(s) 1522
BsnI GGCC 5 cut(s) 285, 604, 749, 823, 1200
Bso31I GGTCTC 3 cut(s) 29, 54, 321
BsoBI CYCGRG 1 cut(s) 280
Bsp1286I GDGCHC 1 cut(s) 1331
BspANI GGCC 5 cut(s) 285, 604, 749, 823, 1200
BspCNI CTCAG 3 cut(s) 25, 1290, 1336
BspFNI CGCG 3 cut(s) 592, 607, 616
BspLI GGNNCC 4 cut(s) 22, 620, 656, 1128
BspMAI CTGCAG 1 cut(s) 487
BspMI ACCTGC 1 cut(s) 1397
BspPI GGATC 7 cut(s) 560, 623, 649, 662, 803, 953, 1327
BspT107I GGYRCC 1 cut(s) 20
BspTNI GGTCTC 3 cut(s) 29, 54, 321
BsrBI CCGCTC 2 cut(s) 334, 378
BsrI ACTGG 2 cut(s) 812, 1264
BssECI CCNNGG 5 cut(s) 263, 279, 280, 599, 936
BssT1I CCWWGG 1 cut(s) 936
Bst2UI CCWGG 2 cut(s) 287, 600
Bst4CI ACNGT 4 cut(s) 25, 86, 1352, 1556
Bst6I CTCTTC 4 cut(s) 186, 313, 1139, 1529
BstC8I GCNNGC 5 cut(s) 456, 548, 647, 1404, 1499
BstDEI CTNAG 4 cut(s) 33, 825, 1298, 1323
BstF5I GGATG 7 cut(s) 275, 835, 925, 1005, 1161, 1272, 1502
BstFNI CGCG 3 cut(s) 592, 607, 616
BstHHI GCGC 2 cut(s) 204, 594
BstMAI GTCTC 6 cut(s) 29, 54, 321, 1458, 1545, 1599
BstMWI GCNNNNNNNGC 5 cut(s) 27, 460, 479, 613, 839
BstNI CCWGG 2 cut(s) 287, 600
BstSCI CCNGG 4 cut(s) 279, 280, 285, 598
BstSFI CTRYAG 2 cut(s) 252, 483
BstSLI GKGCMC 1 cut(s) 1331
BstUI CGCG 3 cut(s) 592, 607, 616
BstV1I GCAGC 9 cut(s) 277, 284, 469, 497, 702, 806, 845, 1037, 1162
BstV2I GAAGAC 3 cut(s) 87, 207, 401
BstX2I RGATCY 2 cut(s) 654, 1319
BstXI CCANNNNNNTGG 1 cut(s) 819
BstYI RGATCY 2 cut(s) 654, 1319
Bsu36I CCTNAGG 1 cut(s) 825
BsuRI GGCC 5 cut(s) 285, 604, 749, 823, 1200
BtsCI GGATG 7 cut(s) 275, 835, 925, 1005, 1161, 1272, 1502
BtsIMutI CAGTG 2 cut(s) 819, 1331
BveI ACCTGC 1 cut(s) 1397
Cac8I GCNNGC 5 cut(s) 456, 548, 647, 1404, 1499
CfoI GCGC 2 cut(s) 204, 594
Cfr13I GGNCC 5 cut(s) 283, 602, 675, 748, 759
Cfr9I CCCGGG 1 cut(s) 280
CseI GACGC 2 cut(s) 201, 1475
Csp6I GTAC 5 cut(s) 491, 539, 950, 1008, 1014
CviAII CATG 3 cut(s) 650, 1041, 1193
CviQI GTAC 5 cut(s) 491, 539, 950, 1008, 1014
DdeI CTNAG 4 cut(s) 33, 825, 1298, 1323
Eam1104I CTCTTC 4 cut(s) 186, 313, 1139, 1529
EarI CTCTTC 4 cut(s) 186, 313, 1139, 1529
Eco130I CCWWGG 1 cut(s) 936
Eco31I GGTCTC 3 cut(s) 29, 54, 321
Eco47I GGWCC 2 cut(s) 675, 759
Eco81I CCTNAGG 1 cut(s) 825
Eco88I CYCGRG 1 cut(s) 280
EcoRII CCWGG 2 cut(s) 285, 598
EcoT14I CCWWGG 1 cut(s) 936
EcoT22I ATGCAT 1 cut(s) 1042
ErhI CCWWGG 1 cut(s) 936
Esp3I CGTCTC 1 cut(s) 1458
FaeI CATG 3 cut(s) 653, 1044, 1196
FaqI GGGAC 1 cut(s) 647
FatI CATG 3 cut(s) 649, 1040, 1192
FauI CCCGC 4 cut(s) 233, 339, 654, 677
FblI GTMKAC 1 cut(s) 773
FokI GGATG 7 cut(s) 262, 842, 932, 1012, 1168, 1259, 1489
GlaI GCGC 2 cut(s) 203, 593
GsaI CCCAGC 2 cut(s) 546, 1632
HaeIII GGCC 5 cut(s) 285, 604, 749, 823, 1200
HapII CCGG 6 cut(s) 57, 281, 415, 673, 754, 1513
HgaI GACGC 2 cut(s) 201, 1475
HhaI GCGC 2 cut(s) 204, 594
Hin1II CATG 3 cut(s) 653, 1044, 1196
Hin6I GCGC 2 cut(s) 202, 592
HinP1I GCGC 2 cut(s) 202, 592
HincII GTYRAC 1 cut(s) 1099
HindII GTYRAC 1 cut(s) 1099
HinfI GANTC 4 cut(s) 175, 945, 1246, 1664
HpaI GTTAAC 1 cut(s) 1099
HpaII CCGG 6 cut(s) 57, 281, 415, 673, 754, 1513
HphI GGTGA 3 cut(s) 228, 252, 630
Hpy166II GTNNAC 5 cut(s) 493, 774, 1099, 1329, 1658
Hpy188I TCNGA 7 cut(s) 34, 427, 565, 808, 909, 958, 1228
Hpy188III TCNNGA 5 cut(s) 179, 787, 1297, 1390, 1565
Hpy8I GTNNAC 5 cut(s) 493, 774, 1099, 1329, 1658
Hpy99I CGWCG 1 cut(s) 772
HpyAV CCTTC 9 cut(s) 231, 249, 345, 642, 675, 688, 753, 784, 1060
HpyCH4III ACNGT 4 cut(s) 25, 86, 1352, 1556
HpyCH4V TGCA 8 cut(s) 485, 833, 982, 1040, 1114, 1329, 1406, 1520
HpyF10VI GCNNNNNNNGC 5 cut(s) 27, 460, 479, 613, 839
HpyF3I CTNAG 4 cut(s) 33, 825, 1298, 1323
Hsp92II CATG 3 cut(s) 653, 1044, 1196
HspAI GCGC 2 cut(s) 202, 592
KspAI GTTAAC 1 cut(s) 1099
Lsp1109I GCAGC 9 cut(s) 277, 284, 469, 497, 702, 806, 845, 1037, 1162
LweI GCATC 5 cut(s) 284, 460, 820, 1348, 1448
MaeIII GTNAC 2 cut(s) 230, 1279
MbiI CCGCTC 2 cut(s) 334, 378
MboII GAAGA 8 cut(s) 92, 203, 207, 300, 406, 1156, 1367, 1516
MfeI CAATTG 1 cut(s) 1532
MflI RGATCY 2 cut(s) 654, 1319
MhlI GDGCHC 1 cut(s) 1331
MluCI AATT 8 cut(s) 559, 903, 931, 1345, 1429, 1507, 1532, 1582
MlyI GAGTC 2 cut(s) 169, 1255
MmeI TCCRAC 2 cut(s) 405, 1297
Mph1103I ATGCAT 1 cut(s) 1042
MseI TTAA 3 cut(s) 930, 1098, 1684
MspA1I CMGCKG 2 cut(s) 488, 797
MspI CCGG 6 cut(s) 57, 281, 415, 673, 754, 1513
MspR9I CCNGG 4 cut(s) 281, 282, 287, 600
MunI CAATTG 1 cut(s) 1532
Mva1269I GAATGC 1 cut(s) 1522
MvaI CCWGG 2 cut(s) 287, 600
MvnI CGCG 3 cut(s) 592, 607, 616
MwoI GCNNNNNNNGC 5 cut(s) 27, 460, 479, 613, 839
NciI CCSGG 2 cut(s) 281, 282
NlaIII CATG 3 cut(s) 653, 1044, 1196
NlaIV GGNNCC 4 cut(s) 22, 620, 656, 1128
NsiI ATGCAT 1 cut(s) 1042
PcsI WCGNNNNNNNCGW 1 cut(s) 954
PctI GAATGC 1 cut(s) 1522
PfeI GAWTC 2 cut(s) 945, 1664
PleI GAGTC 2 cut(s) 169, 1254
PpsI GAGTC 2 cut(s) 169, 1254
PsiI TTATAA 1 cut(s) 48
Psp6I CCWGG 2 cut(s) 285, 598
PspFI CCCAGC 2 cut(s) 542, 1628
PspGI CCWGG 2 cut(s) 285, 598
PspN4I GGNNCC 4 cut(s) 22, 620, 656, 1128
PspPI GGNCC 5 cut(s) 283, 602, 675, 748, 759
PstI CTGCAG 1 cut(s) 487
PsuI RGATCY 2 cut(s) 654, 1319
RsaI GTAC 5 cut(s) 492, 540, 951, 1009, 1015
RsaNI GTAC 5 cut(s) 491, 539, 950, 1008, 1014
SaqAI TTAA 3 cut(s) 930, 1098, 1684
Sau96I GGNCC 5 cut(s) 283, 602, 675, 748, 759
SchI GAGTC 2 cut(s) 169, 1255
ScrFI CCNGG 4 cut(s) 281, 282, 287, 600
SduI GDGCHC 1 cut(s) 1331
SfaNI GCATC 5 cut(s) 284, 460, 820, 1348, 1448
SfcI CTRYAG 2 cut(s) 252, 483
SinI GGWCC 2 cut(s) 675, 759
SmaI CCCGGG 1 cut(s) 282
SmlI CTYRAG 8 cut(s) 177, 373, 515, 534, 576, 837, 1388, 1565
SmoI CTYRAG 8 cut(s) 177, 373, 515, 534, 576, 837, 1388, 1565
SpeI ACTAGT 3 cut(s) 116, 137, 158
Sse9I AATT 8 cut(s) 559, 903, 931, 1345, 1429, 1507, 1532, 1582
StyD4I CCNGG 4 cut(s) 279, 280, 285, 598
StyI CCWWGG 1 cut(s) 936
TaaI ACNGT 4 cut(s) 25, 86, 1352, 1556
TaqI TCGA 3 cut(s) 392, 786, 1527
TasI AATT 8 cut(s) 559, 903, 931, 1345, 1429, 1507, 1532, 1582
TatI WGTACW 2 cut(s) 1007, 1013
TauI GCSGC 1 cut(s) 607
TfiI GAWTC 2 cut(s) 945, 1664
Tru1I TTAA 3 cut(s) 930, 1098, 1684
Tru9I TTAA 3 cut(s) 930, 1098, 1684
TscAI CASTG 2 cut(s) 819, 1331
TseI GCWGC 9 cut(s) 272, 290, 482, 485, 715, 794, 833, 1025, 1175
TspDTI ATGAA 4 cut(s) 17, 1151, 1245, 1617
TspGWI ACGGA 1 cut(s) 1355
TspMI CCCGGG 1 cut(s) 280
TspRI CASTG 2 cut(s) 819, 1331
VneI GTGCAC 1 cut(s) 1327
VpaK11BI GGWCC 2 cut(s) 675, 759
XapI RAATTY 3 cut(s) 559, 903, 1429
XmaI CCCGGG 1 cut(s) 280
XmiI GTMKAC 1 cut(s) 773
Zsp2I ATGCAT 1 cut(s) 1042
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.