Rw7G010780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0017302
Physical Location & Seq
Forward (+)
10058890 .. 10060068
1179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G010780.1

Sequence Viewer

Length: 582 bp
ATGATGACTGGGAAGTTGAACATCCTTGTAACAGGGCAAGATTGCACCATTCTTACGGATAATTACTGTGAAGATGCCTATGATCTACTTGATACCCCTTTGCTCAAGAAACTCCTGCTTGCAGGTATATTATTAGACACTCAAAATTTGAAAGCATCAGTTCAACTGCCTATGACAAGAGACGCAGAGGCAGTTCAGTTGCTATTAGTTGGCTTGCCATCCAATTACCGGAATGCACTCTTCGATCAATTGACACAATATCAGGGAGACAGTTCCTTTCTTGAGGCTTTGAGGCAAAATTATGGGAAGTCTCCTAATGAAAGCAGCAGTGATGGTACAGAACATGTGAAGCAGAAGGTTTCAGAGAGGAAATCAGCCTCAAATTCTCGTCATGAAACGAATTTCATCCAAAACTCAGACAAGAATGCTAATGATGCTGCAAGAAATGCGAAAAGGGGTTCATCAAAATCTGCTAAACCACCAGTCAAAGCGACTTCAGCTCCACCACAAGCGGCAGCTAGTCCCAACCGCGGAAAGAATCAGTTCTTCCTTGCAAAATGGTTTGGTTTTGGAAACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

21.15

Weight (kDa)

9.18

Isoelectric Point (pI)

34.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017302)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g06391
malus_domestica MD14G1170500.v1.1
prunus_persica Prupe.5G164600_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0192411
rosa_laevigata RLG00000004370
rosa_multiflora Rmu_sc0003108.1_g000023
rosa_roxburghii Rroxscaffold_3G00263030
rosa_rugosa Rorug07G0001500
rosa_samantha Rh7AG125200 Rh7BG127500 Rh7CG129200 Rh7DG129300
rosa_wichuraiana Rw7G010780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 113
AccII CGCG 1 cut(s) 531
AciI CCGC 3 cut(s) 512, 529, 531
AcsI RAATTY 3 cut(s) 145, 382, 400
AcuI CTGAAG 1 cut(s) 480
AfaI GTAC 1 cut(s) 337
AfiI CCNNNNNNNGG 2 cut(s) 228, 530
AflIII ACRYGT 1 cut(s) 343
AgsI TTSAA 3 cut(s) 19, 151, 164
AluBI AGCT 2 cut(s) 500, 518
AluI AGCT 2 cut(s) 500, 518
Alw26I GTCTC 3 cut(s) 174, 261, 315
ApeKI GCWGC 3 cut(s) 324, 437, 515
ApoI RAATTY 3 cut(s) 145, 382, 400
Asp700I GAANNNNTTC 1 cut(s) 542
BbvI GCAGC 3 cut(s) 336, 424, 527
BccI CCATC 2 cut(s) 226, 326
BcoDI GTCTC 3 cut(s) 174, 261, 315
BfaI CTAG 1 cut(s) 519
BfuAI ACCTGC 1 cut(s) 113
BisI GCNGC 4 cut(s) 325, 438, 513, 516
BlsI GCNGC 4 cut(s) 326, 439, 514, 517
BmrI ACTGGG 1 cut(s) 18
BmsI GCATC 3 cut(s) 64, 164, 424
BmuI ACTGGG 1 cut(s) 18
BpuEI CTTGAG 2 cut(s) 89, 302
BsaJI CCNNGG 1 cut(s) 529
BsaWI WCCGGW 1 cut(s) 228
BsaXI ACNNNNNCTCC 2 cut(s) 484, 514
Bsc4I CCNNNNNNNGG 2 cut(s) 228, 530
Bse1I ACTGG 2 cut(s) 13, 482
BseDI CCNNGG 1 cut(s) 529
BseGI GGATG 3 cut(s) 21, 218, 405
BseLI CCNNNNNNNGG 2 cut(s) 228, 530
BseMII CTCAG 1 cut(s) 429
BseNI ACTGG 2 cut(s) 13, 482
BseXI GCAGC 3 cut(s) 336, 424, 527
Bsh1236I CGCG 1 cut(s) 531
BsiSI CCGG 1 cut(s) 229
BslFI GGGAC 1 cut(s) 507
BslI CCNNNNNNNGG 2 cut(s) 228, 530
BsmAI GTCTC 3 cut(s) 174, 261, 315
BsmBI CGTCTC 1 cut(s) 174
BsmFI GGGAC 1 cut(s) 507
BsmI GAATGC 2 cut(s) 238, 430
Bsp143I GATC 2 cut(s) 82, 244
BspACI CCGC 3 cut(s) 512, 529, 531
BspCNI CTCAG 1 cut(s) 428
BspFNI CGCG 1 cut(s) 531
BspHI TCATGA 1 cut(s) 391
BspMI ACCTGC 1 cut(s) 113
BsrI ACTGG 2 cut(s) 13, 482
BssECI CCNNGG 1 cut(s) 529
BssMI GATC 2 cut(s) 82, 244
Bst4CI ACNGT 2 cut(s) 68, 272
Bst6I CTCTTC 1 cut(s) 245
BstAPI GCANNNNNTGC 1 cut(s) 446
BstC8I GCNNGC 2 cut(s) 120, 215
BstDEI CTNAG 1 cut(s) 415
BstDSI CCRYGG 1 cut(s) 529
BstF5I GGATG 3 cut(s) 21, 218, 405
BstFNI CGCG 1 cut(s) 531
BstKTI GATC 2 cut(s) 85, 247
BstMAI GTCTC 3 cut(s) 174, 261, 315
BstMBI GATC 2 cut(s) 82, 244
BstMWI GCNNNNNNNGC 3 cut(s) 434, 446, 497
BstNSI RCATGY 1 cut(s) 347
BstUI CGCG 1 cut(s) 531
BstV1I GCAGC 3 cut(s) 336, 424, 527
BtgI CCRYGG 1 cut(s) 529
BtsCI GGATG 3 cut(s) 21, 218, 405
BtsI GCAGTG 1 cut(s) 334
BtsIMutI CAGTG 1 cut(s) 334
BveI ACCTGC 1 cut(s) 113
Cac8I GCNNGC 2 cut(s) 120, 215
CciI TCATGA 1 cut(s) 391
Cfr42I CCGCGG 1 cut(s) 532
CseI GACGC 1 cut(s) 191
Csp6I GTAC 1 cut(s) 336
CviAII CATG 2 cut(s) 344, 392
CviJI RGCY 5 cut(s) 213, 287, 377, 500, 518
CviKI_1 RGCY 5 cut(s) 213, 287, 377, 500, 518
CviQI GTAC 1 cut(s) 336
DdeI CTNAG 1 cut(s) 415
DpnI GATC 2 cut(s) 84, 246
DpnII GATC 2 cut(s) 82, 244
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
Eco57I CTGAAG 1 cut(s) 480
Esp3I CGTCTC 1 cut(s) 174
FaeI CATG 2 cut(s) 347, 395
FaiI YATR 6 cut(s) 81, 128, 173, 303, 345, 393
FaqI GGGAC 1 cut(s) 507
FatI CATG 2 cut(s) 343, 391
Fnu4HI GCNGC 4 cut(s) 325, 438, 513, 516
FokI GGATG 3 cut(s) 8, 205, 392
Fsp4HI GCNGC 4 cut(s) 325, 438, 513, 516
FspBI CTAG 1 cut(s) 519
GluI GCNGC 4 cut(s) 325, 438, 513, 516
HapII CCGG 1 cut(s) 229
HgaI GACGC 1 cut(s) 191
Hin1II CATG 2 cut(s) 347, 395
HinfI GANTC 1 cut(s) 538
HpaII CCGG 1 cut(s) 229
Hpy188I TCNGA 2 cut(s) 364, 418
Hpy188III TCNNGA 3 cut(s) 106, 281, 392
HpyAV CCTTC 1 cut(s) 349
HpyCH4III ACNGT 2 cut(s) 68, 272
HpyCH4V TGCA 5 cut(s) 45, 122, 236, 440, 554
HpyF10VI GCNNNNNNNGC 3 cut(s) 434, 446, 497
HpyF3I CTNAG 1 cut(s) 415
Hsp92II CATG 2 cut(s) 347, 395
KspI CCGCGG 1 cut(s) 532
Kzo9I GATC 2 cut(s) 82, 244
LmnI GCTCC 1 cut(s) 505
LpnPI CCDG 6 cut(s) 18, 108, 128, 242, 248, 495
Lsp1109I GCAGC 3 cut(s) 336, 424, 527
LweI GCATC 3 cut(s) 64, 164, 424
MaeI CTAG 1 cut(s) 519
MaeIII GTNAC 1 cut(s) 28
MalI GATC 2 cut(s) 84, 246
MboI GATC 2 cut(s) 82, 244
MboII GAAGA 3 cut(s) 83, 232, 538
MfeI CAATTG 1 cut(s) 248
MluCI AATT 7 cut(s) 61, 145, 223, 248, 298, 382, 400
MnlI CCTC 5 cut(s) 181, 277, 285, 360, 388
MroXI GAANNNNTTC 1 cut(s) 542
MspA1I CMGCKG 1 cut(s) 531
MspI CCGG 1 cut(s) 229
MunI CAATTG 1 cut(s) 248
Mva1269I GAATGC 2 cut(s) 238, 430
MvnI CGCG 1 cut(s) 531
MwoI GCNNNNNNNGC 3 cut(s) 434, 446, 497
NdeII GATC 2 cut(s) 82, 244
NlaIII CATG 2 cut(s) 347, 395
NspI RCATGY 1 cut(s) 347
PagI TCATGA 1 cut(s) 391
PciI ACATGT 1 cut(s) 343
PctI GAATGC 2 cut(s) 238, 430
PdmI GAANNNNTTC 1 cut(s) 542
PfeI GAWTC 1 cut(s) 538
PkrI GCNGC 4 cut(s) 326, 439, 514, 517
PscI ACATGT 1 cut(s) 343
RsaI GTAC 1 cut(s) 337
RsaNI GTAC 1 cut(s) 336
SacII CCGCGG 1 cut(s) 532
SatI GCNGC 4 cut(s) 325, 438, 513, 516
Sau3AI GATC 2 cut(s) 82, 244
SetI ASST 4 cut(s) 127, 360, 502, 520
SfaNI GCATC 3 cut(s) 64, 164, 424
Sfr303I CCGCGG 1 cut(s) 532
SgrBI CCGCGG 1 cut(s) 532
SmlI CTYRAG 2 cut(s) 104, 281
SmoI CTYRAG 2 cut(s) 104, 281
Sse9I AATT 7 cut(s) 61, 145, 223, 248, 298, 382, 400
SsiI CCGC 3 cut(s) 512, 529, 531
SspMI CTAG 1 cut(s) 519
TaaI ACNGT 2 cut(s) 68, 272
TaqI TCGA 1 cut(s) 243
TasI AATT 7 cut(s) 61, 145, 223, 248, 298, 382, 400
TauI GCSGC 1 cut(s) 515
TfiI GAWTC 1 cut(s) 538
TscAI CASTG 1 cut(s) 334
TseI GCWGC 3 cut(s) 324, 437, 515
TspDTI ATGAA 4 cut(s) 333, 394, 408, 450
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 1 cut(s) 334
XapI RAATTY 3 cut(s) 145, 382, 400
XceI RCATGY 1 cut(s) 347
XmnI GAANNNNTTC 1 cut(s) 542
XspI CTAG 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.