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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g06391 |
| malus_domestica | MD14G1170500.v1.1 |
| prunus_persica | Prupe.5G164600_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr7g0192411 |
| rosa_laevigata | RLG00000004370 |
| rosa_multiflora | Rmu_sc0003108.1_g000023 |
| rosa_roxburghii | Rroxscaffold_3G00263030 |
| rosa_rugosa | Rorug07G0001500 |
| rosa_samantha | Rh7AG125200 Rh7BG127500 Rh7CG129200 Rh7DG129300 |
| rosa_wichuraiana | Rw7G010780 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 129 |
| Acc36I | ACCTGC | 2 cut(s) | 31, 1442 |
| AccB1I | GGYRCC | 1 cut(s) | 101 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1799 |
| AccBSI | CCGCTC | 2 cut(s) | 415, 459 |
| AccI | GTMKAC | 1 cut(s) | 854 |
| AccII | CGCG | 3 cut(s) | 673, 688, 697 |
| AclWI | GGATC | 7 cut(s) | 28, 641, 704, 730, 743, 1034, 1372 |
| AcoI | YGGCCR | 1 cut(s) | 725 |
| AcsI | RAATTY | 5 cut(s) | 640, 984, 1474, 1711, 1729 |
| AfaI | GTAC | 6 cut(s) | 211, 621, 1032, 1054, 1060, 1666 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 367, 391, 723, 837, 1557, 1799 |
| AflIII | ACRYGT | 1 cut(s) | 1672 |
| AgsI | TTSAA | 2 cut(s) | 1315, 1480 |
| AhlI | ACTAGT | 3 cut(s) | 197, 218, 239 |
| AjnI | CCWGG | 2 cut(s) | 366, 679 |
| AluBI | AGCT | 5 cut(s) | 111, 332, 453, 796, 917 |
| AluI | AGCT | 5 cut(s) | 111, 332, 453, 796, 917 |
| Alw21I | GWGCWC | 1 cut(s) | 1376 |
| Alw26I | GTCTC | 6 cut(s) | 110, 135, 402, 1503, 1590, 1644 |
| Alw44I | GTGCAC | 1 cut(s) | 1372 |
| AlwI | GGATC | 7 cut(s) | 28, 641, 704, 730, 743, 1034, 1372 |
| Ama87I | CYCGRG | 1 cut(s) | 361 |
| AoxI | GGCC | 6 cut(s) | 364, 683, 725, 828, 902, 1243 |
| ApaLI | GTGCAC | 1 cut(s) | 1372 |
| ApoI | RAATTY | 5 cut(s) | 640, 984, 1474, 1711, 1729 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 804, 836 |
| AspLEI | GCGC | 1 cut(s) | 675 |
| AspS9I | GGNCC | 6 cut(s) | 67, 364, 683, 756, 829, 840 |
| AsuC2I | CCSGG | 2 cut(s) | 362, 363 |
| AsuHPI | GGTGA | 4 cut(s) | 309, 333, 711, 1782 |
| AvaI | CYCGRG | 1 cut(s) | 361 |
| AvaII | GGWCC | 3 cut(s) | 67, 756, 840 |
| AxyI | CCTNAGG | 1 cut(s) | 906 |
| BaeGI | GKGCMC | 1 cut(s) | 1376 |
| BamHI | GGATCC | 1 cut(s) | 735 |
| BanI | GGYRCC | 1 cut(s) | 101 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 304, 336 |
| BbsI | GAAGAC | 3 cut(s) | 168, 288, 482 |
| Bbv12I | GWGCWC | 1 cut(s) | 1376 |
| BccI | CCATC | 2 cut(s) | 1555, 1655 |
| BceAI | ACGGC | 2 cut(s) | 24, 1369 |
| BciT130I | CCWGG | 2 cut(s) | 368, 681 |
| BclI | TGATCA | 2 cut(s) | 889, 1003 |
| BcnI | CCSGG | 2 cut(s) | 362, 363 |
| BcoDI | GTCTC | 6 cut(s) | 110, 135, 402, 1503, 1590, 1644 |
| BcuI | ACTAGT | 3 cut(s) | 197, 218, 239 |
| BfmI | CTRYAG | 3 cut(s) | 27, 333, 564 |
| BfuAI | ACCTGC | 2 cut(s) | 31, 1442 |
| BmcAI | AGTACT | 1 cut(s) | 211 |
| Bme1390I | CCNGG | 4 cut(s) | 362, 363, 368, 681 |
| Bme18I | GGWCC | 3 cut(s) | 67, 756, 840 |
| BmeT110I | CYCGRG | 1 cut(s) | 361 |
| BmgT120I | GGNCC | 6 cut(s) | 67, 364, 683, 756, 829, 840 |
| BmiI | GGNNCC | 5 cut(s) | 103, 615, 701, 737, 1173 |
| BmrFI | CCNGG | 4 cut(s) | 362, 363, 368, 681 |
| BmrI | ACTGGG | 1 cut(s) | 1314 |
| BmsI | GCATC | 5 cut(s) | 541, 901, 1393, 1493, 1753 |
| BmuI | ACTGGG | 1 cut(s) | 1314 |
| BpiI | GAAGAC | 3 cut(s) | 168, 288, 482 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 399, 431 |
| BpmI | CTGGAG | 1 cut(s) | 600 |
| BpuEI | CTTGAG | 7 cut(s) | 243, 475, 581, 642, 903, 1418, 1631 |
| BpuMI | CCSGG | 2 cut(s) | 362, 363 |
| BsaI | GGTCTC | 3 cut(s) | 110, 135, 402 |
| BsaJI | CCNNGG | 6 cut(s) | 344, 360, 361, 680, 722, 1017 |
| BsaWI | WCCGGW | 3 cut(s) | 137, 834, 1557 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 196, 226 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 367, 391, 723, 837, 1557, 1799 |
| Bse1I | ACTGG | 3 cut(s) | 207, 617, 1309 |
| Bse21I | CCTNAGG | 1 cut(s) | 906 |
| BseBI | CCWGG | 2 cut(s) | 368, 681 |
| BseDI | CCNNGG | 6 cut(s) | 344, 360, 361, 680, 722, 1017 |
| BseGI | GGATG | 7 cut(s) | 356, 916, 1006, 1206, 1317, 1547, 1734 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 367, 391, 723, 837, 1557, 1799 |
| BseMII | CTCAG | 4 cut(s) | 105, 1334, 1382, 1758 |
| BseNI | ACTGG | 3 cut(s) | 207, 617, 1309 |
| BseRI | GAGGAG | 1 cut(s) | 951 |
| BseSI | GKGCMC | 1 cut(s) | 1376 |
| BseX3I | CGGCCG | 1 cut(s) | 725 |
| BseYI | CCCAGC | 1 cut(s) | 623 |
| BsgI | GTGCAG | 1 cut(s) | 1178 |
| Bsh1236I | CGCG | 3 cut(s) | 673, 688, 697 |
| Bsh1285I | CGRYCG | 1 cut(s) | 728 |
| BshFI | GGCC | 6 cut(s) | 366, 685, 727, 830, 904, 1245 |
| BshNI | GGYRCC | 1 cut(s) | 101 |
| BsiEI | CGRYCG | 1 cut(s) | 728 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1376 |
| BsiHKCI | CYCGRG | 1 cut(s) | 361 |
| BsiSI | CCGG | 6 cut(s) | 138, 362, 496, 754, 835, 1558 |
| BslFI | GGGAC | 2 cut(s) | 728, 806 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 367, 391, 723, 837, 1557, 1799 |
| BsmAI | GTCTC | 6 cut(s) | 110, 135, 402, 1503, 1590, 1644 |
| BsmBI | CGTCTC | 1 cut(s) | 1503 |
| BsmFI | GGGAC | 2 cut(s) | 728, 806 |
| BsmI | GAATGC | 2 cut(s) | 1567, 1759 |
| BsnI | GGCC | 6 cut(s) | 366, 685, 727, 830, 904, 1245 |
| Bso31I | GGTCTC | 3 cut(s) | 110, 135, 402 |
| BsoBI | CYCGRG | 1 cut(s) | 361 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1376 |
| BspANI | GGCC | 6 cut(s) | 366, 685, 727, 830, 904, 1245 |
| BspCNI | CTCAG | 4 cut(s) | 106, 1335, 1381, 1757 |
| BspFNI | CGCG | 3 cut(s) | 673, 688, 697 |
| BspHI | TCATGA | 2 cut(s) | 81, 1720 |
| BspLI | GGNNCC | 5 cut(s) | 103, 615, 701, 737, 1173 |
| BspMAI | CTGCAG | 2 cut(s) | 31, 568 |
| BspMI | ACCTGC | 2 cut(s) | 31, 1442 |
| BspPI | GGATC | 7 cut(s) | 28, 641, 704, 730, 743, 1034, 1372 |
| BspT107I | GGYRCC | 1 cut(s) | 101 |
| BspTNI | GGTCTC | 3 cut(s) | 110, 135, 402 |
| BsrBI | CCGCTC | 2 cut(s) | 415, 459 |
| BsrI | ACTGG | 3 cut(s) | 207, 617, 1309 |
| BssECI | CCNNGG | 6 cut(s) | 344, 360, 361, 680, 722, 1017 |
| BssT1I | CCWWGG | 1 cut(s) | 1017 |
| Bst2UI | CCWGG | 2 cut(s) | 368, 681 |
| Bst4CI | ACNGT | 5 cut(s) | 106, 167, 471, 1397, 1601 |
| Bst6I | CTCTTC | 4 cut(s) | 267, 394, 1184, 1574 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1775 |
| BstC8I | GCNNGC | 3 cut(s) | 537, 629, 1449 |
| BstDEI | CTNAG | 5 cut(s) | 114, 906, 1343, 1368, 1744 |
| BstF5I | GGATG | 7 cut(s) | 356, 916, 1006, 1206, 1317, 1547, 1734 |
| BstFNI | CGCG | 3 cut(s) | 673, 688, 697 |
| BstHHI | GCGC | 1 cut(s) | 675 |
| BstMAI | GTCTC | 6 cut(s) | 110, 135, 402, 1503, 1590, 1644 |
| BstMCI | CGRYCG | 1 cut(s) | 728 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 108, 541, 560, 694, 920, 1763, 1775 |
| BstNI | CCWGG | 2 cut(s) | 368, 681 |
| BstNSI | RCATGY | 1 cut(s) | 1676 |
| BstSCI | CCNGG | 4 cut(s) | 360, 361, 366, 679 |
| BstSFI | CTRYAG | 3 cut(s) | 27, 333, 564 |
| BstSLI | GKGCMC | 1 cut(s) | 1376 |
| BstUI | CGCG | 3 cut(s) | 673, 688, 697 |
| BstV2I | GAAGAC | 3 cut(s) | 168, 288, 482 |
| BstX2I | RGATCY | 3 cut(s) | 33, 735, 1364 |
| BstYI | RGATCY | 3 cut(s) | 33, 735, 1364 |
| BstZI | CGGCCG | 1 cut(s) | 725 |
| Bsu36I | CCTNAGG | 1 cut(s) | 906 |
| BsuRI | GGCC | 6 cut(s) | 366, 685, 727, 830, 904, 1245 |
| BtsCI | GGATG | 7 cut(s) | 356, 916, 1006, 1206, 1317, 1547, 1734 |
| BtsI | GCAGTG | 1 cut(s) | 1663 |
| BtsIMutI | CAGTG | 2 cut(s) | 1376, 1663 |
| BveI | ACCTGC | 2 cut(s) | 31, 1442 |
| Cac8I | GCNNGC | 3 cut(s) | 537, 629, 1449 |
| CciI | TCATGA | 2 cut(s) | 81, 1720 |
| CfoI | GCGC | 1 cut(s) | 675 |
| Cfr13I | GGNCC | 6 cut(s) | 67, 364, 683, 756, 829, 840 |
| Cfr9I | CCCGGG | 1 cut(s) | 361 |
| CseI | GACGC | 2 cut(s) | 282, 1520 |
| Csp6I | GTAC | 6 cut(s) | 210, 620, 1031, 1053, 1059, 1665 |
| CviAII | CATG | 6 cut(s) | 82, 731, 1086, 1238, 1673, 1721 |
| CviQI | GTAC | 6 cut(s) | 210, 620, 1031, 1053, 1059, 1665 |
| DdeI | CTNAG | 5 cut(s) | 114, 906, 1343, 1368, 1744 |
| EaeI | YGGCCR | 1 cut(s) | 725 |
| EagI | CGGCCG | 1 cut(s) | 725 |
| Eam1104I | CTCTTC | 4 cut(s) | 267, 394, 1184, 1574 |
| EarI | CTCTTC | 4 cut(s) | 267, 394, 1184, 1574 |
| EciI | GGCGGA | 2 cut(s) | 26, 80 |
| EclXI | CGGCCG | 1 cut(s) | 725 |
| Eco130I | CCWWGG | 1 cut(s) | 1017 |
| Eco31I | GGTCTC | 3 cut(s) | 110, 135, 402 |
| Eco47I | GGWCC | 3 cut(s) | 67, 756, 840 |
| Eco52I | CGGCCG | 1 cut(s) | 725 |
| Eco81I | CCTNAGG | 1 cut(s) | 906 |
| Eco88I | CYCGRG | 1 cut(s) | 361 |
| EcoRII | CCWGG | 2 cut(s) | 366, 679 |
| EcoT14I | CCWWGG | 1 cut(s) | 1017 |
| EcoT22I | ATGCAT | 1 cut(s) | 1087 |
| ErhI | CCWWGG | 1 cut(s) | 1017 |
| Esp3I | CGTCTC | 1 cut(s) | 1503 |
| FaeI | CATG | 6 cut(s) | 85, 734, 1089, 1241, 1676, 1724 |
| FaqI | GGGAC | 2 cut(s) | 728, 806 |
| FatI | CATG | 6 cut(s) | 81, 730, 1085, 1237, 1672, 1720 |
| FauI | CCCGC | 3 cut(s) | 314, 420, 758 |
| FbaI | TGATCA | 2 cut(s) | 889, 1003 |
| FblI | GTMKAC | 1 cut(s) | 854 |
| FokI | GGATG | 7 cut(s) | 343, 923, 1013, 1213, 1304, 1534, 1721 |
| GlaI | GCGC | 1 cut(s) | 674 |
| GsaI | CCCAGC | 1 cut(s) | 627 |
| GsuI | CTGGAG | 1 cut(s) | 600 |
| HaeIII | GGCC | 6 cut(s) | 366, 685, 727, 830, 904, 1245 |
| HapII | CCGG | 6 cut(s) | 138, 362, 496, 754, 835, 1558 |
| HgaI | GACGC | 2 cut(s) | 282, 1520 |
| HhaI | GCGC | 1 cut(s) | 675 |
| Hin1II | CATG | 6 cut(s) | 85, 734, 1089, 1241, 1676, 1724 |
| Hin6I | GCGC | 1 cut(s) | 673 |
| HinP1I | GCGC | 1 cut(s) | 673 |
| HincII | GTYRAC | 2 cut(s) | 1144, 1493 |
| HindII | GTYRAC | 2 cut(s) | 1144, 1493 |
| HinfI | GANTC | 2 cut(s) | 256, 1026 |
| HpaI | GTTAAC | 1 cut(s) | 1144 |
| HpaII | CCGG | 6 cut(s) | 138, 362, 496, 754, 835, 1558 |
| HphI | GGTGA | 4 cut(s) | 309, 333, 711, 1782 |
| Hpy166II | GTNNAC | 7 cut(s) | 44, 574, 855, 1144, 1374, 1493, 1790 |
| Hpy188I | TCNGA | 9 cut(s) | 115, 508, 646, 889, 990, 1039, 1273, 1693, 1747 |
| Hpy188III | TCNNGA | 7 cut(s) | 82, 260, 868, 1342, 1435, 1610, 1721 |
| Hpy8I | GTNNAC | 7 cut(s) | 44, 574, 855, 1144, 1374, 1493, 1790 |
| Hpy99I | CGWCG | 1 cut(s) | 853 |
| HpyCH4III | ACNGT | 5 cut(s) | 106, 167, 471, 1397, 1601 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 108, 541, 560, 694, 920, 1763, 1775 |
| HpyF3I | CTNAG | 5 cut(s) | 114, 906, 1343, 1368, 1744 |
| Hsp92II | CATG | 6 cut(s) | 85, 734, 1089, 1241, 1676, 1724 |
| HspAI | GCGC | 1 cut(s) | 673 |
| Ksp22I | TGATCA | 2 cut(s) | 889, 1003 |
| KspAI | GTTAAC | 1 cut(s) | 1144 |
| LmnI | GCTCC | 1 cut(s) | 619 |
| LweI | GCATC | 5 cut(s) | 541, 901, 1393, 1493, 1753 |
| MaeIII | GTNAC | 3 cut(s) | 311, 1252, 1324 |
| MbiI | CCGCTC | 2 cut(s) | 415, 459 |
| MboII | GAAGA | 8 cut(s) | 173, 284, 288, 381, 487, 1201, 1412, 1561 |
| MfeI | CAATTG | 1 cut(s) | 1577 |
| MflI | RGATCY | 3 cut(s) | 33, 735, 1364 |
| MhlI | GDGCHC | 1 cut(s) | 1376 |
| MlyI | GAGTC | 1 cut(s) | 250 |
| MmeI | TCCRAC | 2 cut(s) | 486, 1342 |
| Mph1103I | ATGCAT | 1 cut(s) | 1087 |
| MseI | TTAA | 3 cut(s) | 1011, 1143, 1295 |
| MspA1I | CMGCKG | 1 cut(s) | 569 |
| MspI | CCGG | 6 cut(s) | 138, 362, 496, 754, 835, 1558 |
| MspR9I | CCNGG | 4 cut(s) | 362, 363, 368, 681 |
| MunI | CAATTG | 1 cut(s) | 1577 |
| Mva1269I | GAATGC | 2 cut(s) | 1567, 1759 |
| MvaI | CCWGG | 2 cut(s) | 368, 681 |
| MvnI | CGCG | 3 cut(s) | 673, 688, 697 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 108, 541, 560, 694, 920, 1763, 1775 |
| NciI | CCSGG | 2 cut(s) | 362, 363 |
| NlaIII | CATG | 6 cut(s) | 85, 734, 1089, 1241, 1676, 1724 |
| NlaIV | GGNNCC | 5 cut(s) | 103, 615, 701, 737, 1173 |
| NmeAIII | GCCGAG | 1 cut(s) | 703 |
| NmuCI | GTSAC | 1 cut(s) | 1252 |
| NsiI | ATGCAT | 1 cut(s) | 1087 |
| NspI | RCATGY | 1 cut(s) | 1676 |
| PagI | TCATGA | 2 cut(s) | 81, 1720 |
| PciI | ACATGT | 1 cut(s) | 1672 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1035 |
| PctI | GAATGC | 2 cut(s) | 1567, 1759 |
| PfeI | GAWTC | 1 cut(s) | 1026 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1799 |
| PleI | GAGTC | 1 cut(s) | 250 |
| PpsI | GAGTC | 1 cut(s) | 250 |
| PscI | ACATGT | 1 cut(s) | 1672 |
| PsiI | TTATAA | 1 cut(s) | 129 |
| Psp6I | CCWGG | 2 cut(s) | 366, 679 |
| PspFI | CCCAGC | 1 cut(s) | 623 |
| PspGI | CCWGG | 2 cut(s) | 366, 679 |
| PspN4I | GGNNCC | 5 cut(s) | 103, 615, 701, 737, 1173 |
| PspPI | GGNCC | 6 cut(s) | 67, 364, 683, 756, 829, 840 |
| PstI | CTGCAG | 2 cut(s) | 31, 568 |
| PsuI | RGATCY | 3 cut(s) | 33, 735, 1364 |
| RsaI | GTAC | 6 cut(s) | 211, 621, 1032, 1054, 1060, 1666 |
| RsaNI | GTAC | 6 cut(s) | 210, 620, 1031, 1053, 1059, 1665 |
| SaqAI | TTAA | 3 cut(s) | 1011, 1143, 1295 |
| Sau96I | GGNCC | 6 cut(s) | 67, 364, 683, 756, 829, 840 |
| ScaI | AGTACT | 1 cut(s) | 211 |
| SchI | GAGTC | 1 cut(s) | 250 |
| ScrFI | CCNGG | 4 cut(s) | 362, 363, 368, 681 |
| SduI | GDGCHC | 1 cut(s) | 1376 |
| SfaNI | GCATC | 5 cut(s) | 541, 901, 1393, 1493, 1753 |
| SfcI | CTRYAG | 3 cut(s) | 27, 333, 564 |
| SinI | GGWCC | 3 cut(s) | 67, 756, 840 |
| SmaI | CCCGGG | 1 cut(s) | 363 |
| SmlI | CTYRAG | 7 cut(s) | 258, 454, 596, 657, 918, 1433, 1610 |
| SmoI | CTYRAG | 7 cut(s) | 258, 454, 596, 657, 918, 1433, 1610 |
| SpeI | ACTAGT | 3 cut(s) | 197, 218, 239 |
| StyD4I | CCNGG | 4 cut(s) | 360, 361, 366, 679 |
| StyI | CCWWGG | 1 cut(s) | 1017 |
| TaaI | ACNGT | 5 cut(s) | 106, 167, 471, 1397, 1601 |
| TaqI | TCGA | 3 cut(s) | 473, 867, 1572 |
| TatI | WGTACW | 3 cut(s) | 209, 1052, 1058 |
| TauI | GCSGC | 3 cut(s) | 688, 730, 1656 |
| TfiI | GAWTC | 1 cut(s) | 1026 |
| Tru1I | TTAA | 3 cut(s) | 1011, 1143, 1295 |
| Tru9I | TTAA | 3 cut(s) | 1011, 1143, 1295 |
| TscAI | CASTG | 2 cut(s) | 1376, 1663 |
| TseFI | GTSAC | 1 cut(s) | 1252 |
| Tsp45I | GTSAC | 1 cut(s) | 1252 |
| TspDTI | ATGAA | 7 cut(s) | 70, 98, 1196, 1290, 1662, 1723, 1737 |
| TspMI | CCCGGG | 1 cut(s) | 361 |
| TspRI | CASTG | 2 cut(s) | 1376, 1663 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1799 |
| VneI | GTGCAC | 1 cut(s) | 1372 |
| VpaK11BI | GGWCC | 3 cut(s) | 67, 756, 840 |
| XapI | RAATTY | 5 cut(s) | 640, 984, 1474, 1711, 1729 |
| XceI | RCATGY | 1 cut(s) | 1676 |
| XmaI | CCCGGG | 1 cut(s) | 361 |
| XmiI | GTMKAC | 1 cut(s) | 854 |
| ZrmI | AGTACT | 1 cut(s) | 211 |
| Zsp2I | ATGCAT | 1 cut(s) | 1087 |