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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g06391 |
| malus_domestica | MD14G1170500.v1.1 |
| prunus_persica | Prupe.5G164600_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr7g0192411 |
| rosa_laevigata | RLG00000004370 |
| rosa_multiflora | Rmu_sc0003108.1_g000023 |
| rosa_roxburghii | Rroxscaffold_3G00263030 |
| rosa_rugosa | Rorug07G0001500 |
| rosa_samantha | Rh7AG125200 Rh7BG127500 Rh7CG129200 Rh7DG129300 |
| rosa_wichuraiana | Rw7G010780 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 183 |
| Acc36I | ACCTGC | 2 cut(s) | 82, 1496 |
| AccB1I | GGYRCC | 1 cut(s) | 152 |
| AccBSI | CCGCTC | 2 cut(s) | 469, 513 |
| AccI | GTMKAC | 1 cut(s) | 908 |
| AccII | CGCG | 4 cut(s) | 727, 742, 751, 1914 |
| AclWI | GGATC | 8 cut(s) | 79, 695, 758, 784, 797, 938, 1088, 1426 |
| AcsI | RAATTY | 5 cut(s) | 694, 1038, 1528, 1765, 1783 |
| AcuI | CTGAAG | 2 cut(s) | 732, 1863 |
| AfaI | GTAC | 7 cut(s) | 265, 627, 675, 1086, 1108, 1114, 1720 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 421, 445, 891, 1611, 1913 |
| AflIII | ACRYGT | 1 cut(s) | 1726 |
| AgsI | TTSAA | 2 cut(s) | 1369, 1534 |
| AhlI | ACTAGT | 3 cut(s) | 251, 272, 293 |
| AjnI | CCWGG | 2 cut(s) | 420, 733 |
| AluBI | AGCT | 7 cut(s) | 162, 386, 507, 850, 971, 1883, 1901 |
| AluI | AGCT | 7 cut(s) | 162, 386, 507, 850, 971, 1883, 1901 |
| Alw21I | GWGCWC | 1 cut(s) | 1430 |
| Alw26I | GTCTC | 6 cut(s) | 161, 189, 456, 1557, 1644, 1698 |
| Alw44I | GTGCAC | 1 cut(s) | 1426 |
| AlwI | GGATC | 8 cut(s) | 79, 695, 758, 784, 797, 938, 1088, 1426 |
| Ama87I | CYCGRG | 1 cut(s) | 415 |
| AoxI | GGCC | 6 cut(s) | 35, 418, 737, 882, 956, 1297 |
| ApaLI | GTGCAC | 1 cut(s) | 1426 |
| ApoI | RAATTY | 5 cut(s) | 694, 1038, 1528, 1765, 1783 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 717, 1925 |
| AspLEI | GCGC | 1 cut(s) | 729 |
| AspS9I | GGNCC | 6 cut(s) | 118, 418, 737, 810, 883, 894 |
| AsuC2I | CCSGG | 2 cut(s) | 416, 417 |
| AsuHPI | GGTGA | 3 cut(s) | 363, 387, 765 |
| AvaI | CYCGRG | 1 cut(s) | 415 |
| AvaII | GGWCC | 3 cut(s) | 118, 810, 894 |
| AxyI | CCTNAGG | 1 cut(s) | 960 |
| BaeGI | GKGCMC | 1 cut(s) | 1430 |
| BamHI | GGATCC | 1 cut(s) | 789 |
| BanI | GGYRCC | 1 cut(s) | 152 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 358, 390 |
| BbsI | GAAGAC | 3 cut(s) | 222, 342, 536 |
| Bbv12I | GWGCWC | 1 cut(s) | 1430 |
| BccI | CCATC | 4 cut(s) | 948, 1049, 1609, 1709 |
| BceAI | ACGGC | 1 cut(s) | 1423 |
| BciT130I | CCWGG | 2 cut(s) | 422, 735 |
| BcnI | CCSGG | 2 cut(s) | 416, 417 |
| BcoDI | GTCTC | 6 cut(s) | 161, 189, 456, 1557, 1644, 1698 |
| BcuI | ACTAGT | 3 cut(s) | 251, 272, 293 |
| BfmI | CTRYAG | 3 cut(s) | 78, 387, 618 |
| BfuAI | ACCTGC | 2 cut(s) | 82, 1496 |
| BmcAI | AGTACT | 1 cut(s) | 265 |
| Bme1390I | CCNGG | 4 cut(s) | 416, 417, 422, 735 |
| Bme18I | GGWCC | 3 cut(s) | 118, 810, 894 |
| BmeT110I | CYCGRG | 1 cut(s) | 415 |
| BmgT120I | GGNCC | 6 cut(s) | 118, 418, 737, 810, 883, 894 |
| BmiI | GGNNCC | 5 cut(s) | 154, 755, 791, 1227, 1657 |
| BmrFI | CCNGG | 4 cut(s) | 416, 417, 422, 735 |
| BmrI | ACTGGG | 1 cut(s) | 1368 |
| BmsI | GCATC | 6 cut(s) | 419, 595, 955, 1447, 1547, 1807 |
| BmuI | ACTGGG | 1 cut(s) | 1368 |
| BpiI | GAAGAC | 3 cut(s) | 222, 342, 536 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 453, 485 |
| BpuEI | CTTGAG | 7 cut(s) | 297, 529, 635, 654, 957, 1472, 1685 |
| BpuMI | CCSGG | 2 cut(s) | 416, 417 |
| BsaI | GGTCTC | 3 cut(s) | 161, 189, 456 |
| BsaJI | CCNNGG | 6 cut(s) | 398, 414, 415, 734, 1071, 1912 |
| BsaWI | WCCGGW | 3 cut(s) | 191, 888, 1611 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 250, 280, 1867, 1897 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 421, 445, 891, 1611, 1913 |
| Bse1I | ACTGG | 4 cut(s) | 261, 947, 1363, 1865 |
| Bse21I | CCTNAGG | 1 cut(s) | 960 |
| BseBI | CCWGG | 2 cut(s) | 422, 735 |
| BseDI | CCNNGG | 6 cut(s) | 398, 414, 415, 734, 1071, 1912 |
| BseGI | GGATG | 8 cut(s) | 410, 959, 970, 1060, 1260, 1371, 1601, 1788 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 421, 445, 891, 1611, 1913 |
| BseMII | CTCAG | 4 cut(s) | 156, 1411, 1436, 1812 |
| BseNI | ACTGG | 4 cut(s) | 261, 947, 1363, 1865 |
| BseRI | GAGGAG | 1 cut(s) | 1005 |
| BseSI | GKGCMC | 1 cut(s) | 1430 |
| BseYI | CCCAGC | 1 cut(s) | 677 |
| BsgI | GTGCAG | 1 cut(s) | 1232 |
| Bsh1236I | CGCG | 4 cut(s) | 727, 742, 751, 1914 |
| BshFI | GGCC | 6 cut(s) | 37, 420, 739, 884, 958, 1299 |
| BshNI | GGYRCC | 1 cut(s) | 152 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1430 |
| BsiHKCI | CYCGRG | 1 cut(s) | 415 |
| BsiSI | CCGG | 7 cut(s) | 88, 192, 416, 550, 808, 889, 1612 |
| BslFI | GGGAC | 2 cut(s) | 782, 1890 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 421, 445, 891, 1611, 1913 |
| BsmAI | GTCTC | 6 cut(s) | 161, 189, 456, 1557, 1644, 1698 |
| BsmBI | CGTCTC | 2 cut(s) | 1557, 1644 |
| BsmFI | GGGAC | 2 cut(s) | 782, 1890 |
| BsmI | GAATGC | 2 cut(s) | 1621, 1813 |
| BsnI | GGCC | 6 cut(s) | 37, 420, 739, 884, 958, 1299 |
| Bso31I | GGTCTC | 3 cut(s) | 161, 189, 456 |
| BsoBI | CYCGRG | 1 cut(s) | 415 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1430 |
| BspANI | GGCC | 6 cut(s) | 37, 420, 739, 884, 958, 1299 |
| BspCNI | CTCAG | 4 cut(s) | 157, 1410, 1435, 1811 |
| BspFNI | CGCG | 4 cut(s) | 727, 742, 751, 1914 |
| BspHI | TCATGA | 2 cut(s) | 132, 1774 |
| BspLI | GGNNCC | 5 cut(s) | 154, 755, 791, 1227, 1657 |
| BspMAI | CTGCAG | 2 cut(s) | 82, 622 |
| BspMI | ACCTGC | 2 cut(s) | 82, 1496 |
| BspPI | GGATC | 8 cut(s) | 79, 695, 758, 784, 797, 938, 1088, 1426 |
| BspT107I | GGYRCC | 1 cut(s) | 152 |
| BspTNI | GGTCTC | 3 cut(s) | 161, 189, 456 |
| BsrBI | CCGCTC | 2 cut(s) | 469, 513 |
| BsrI | ACTGG | 4 cut(s) | 261, 947, 1363, 1865 |
| BssECI | CCNNGG | 6 cut(s) | 398, 414, 415, 734, 1071, 1912 |
| BssT1I | CCWWGG | 1 cut(s) | 1071 |
| Bst2UI | CCWGG | 2 cut(s) | 422, 735 |
| Bst4CI | ACNGT | 5 cut(s) | 157, 221, 525, 1451, 1655 |
| Bst6I | CTCTTC | 4 cut(s) | 321, 448, 1238, 1628 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1829 |
| BstC8I | GCNNGC | 5 cut(s) | 591, 683, 782, 1503, 1598 |
| BstDEI | CTNAG | 5 cut(s) | 165, 960, 1397, 1422, 1798 |
| BstDSI | CCRYGG | 1 cut(s) | 1912 |
| BstF5I | GGATG | 8 cut(s) | 410, 959, 970, 1060, 1260, 1371, 1601, 1788 |
| BstFNI | CGCG | 4 cut(s) | 727, 742, 751, 1914 |
| BstHHI | GCGC | 1 cut(s) | 729 |
| BstMAI | GTCTC | 6 cut(s) | 161, 189, 456, 1557, 1644, 1698 |
| BstNI | CCWGG | 2 cut(s) | 422, 735 |
| BstNSI | RCATGY | 1 cut(s) | 1730 |
| BstSCI | CCNGG | 4 cut(s) | 414, 415, 420, 733 |
| BstSFI | CTRYAG | 3 cut(s) | 78, 387, 618 |
| BstSLI | GKGCMC | 1 cut(s) | 1430 |
| BstUI | CGCG | 4 cut(s) | 727, 742, 751, 1914 |
| BstV2I | GAAGAC | 3 cut(s) | 222, 342, 536 |
| BstX2I | RGATCY | 3 cut(s) | 84, 789, 1418 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 954 |
| BstYI | RGATCY | 3 cut(s) | 84, 789, 1418 |
| Bsu36I | CCTNAGG | 1 cut(s) | 960 |
| BsuRI | GGCC | 6 cut(s) | 37, 420, 739, 884, 958, 1299 |
| BtgI | CCRYGG | 1 cut(s) | 1912 |
| BtsCI | GGATG | 8 cut(s) | 410, 959, 970, 1060, 1260, 1371, 1601, 1788 |
| BtsI | GCAGTG | 1 cut(s) | 1717 |
| BtsIMutI | CAGTG | 3 cut(s) | 954, 1430, 1717 |
| BveI | ACCTGC | 2 cut(s) | 82, 1496 |
| Cac8I | GCNNGC | 5 cut(s) | 591, 683, 782, 1503, 1598 |
| CciI | TCATGA | 2 cut(s) | 132, 1774 |
| CfoI | GCGC | 1 cut(s) | 729 |
| Cfr13I | GGNCC | 6 cut(s) | 118, 418, 737, 810, 883, 894 |
| Cfr42I | CCGCGG | 1 cut(s) | 1915 |
| Cfr9I | CCCGGG | 1 cut(s) | 415 |
| CseI | GACGC | 2 cut(s) | 336, 1574 |
| Csp6I | GTAC | 7 cut(s) | 264, 626, 674, 1085, 1107, 1113, 1719 |
| CviAII | CATG | 7 cut(s) | 52, 133, 785, 1140, 1292, 1727, 1775 |
| CviQI | GTAC | 7 cut(s) | 264, 626, 674, 1085, 1107, 1113, 1719 |
| DdeI | CTNAG | 5 cut(s) | 165, 960, 1397, 1422, 1798 |
| Eam1104I | CTCTTC | 4 cut(s) | 321, 448, 1238, 1628 |
| EarI | CTCTTC | 4 cut(s) | 321, 448, 1238, 1628 |
| EciI | GGCGGA | 1 cut(s) | 131 |
| Eco130I | CCWWGG | 1 cut(s) | 1071 |
| Eco147I | AGGCCT | 1 cut(s) | 37 |
| Eco31I | GGTCTC | 3 cut(s) | 161, 189, 456 |
| Eco47I | GGWCC | 3 cut(s) | 118, 810, 894 |
| Eco57I | CTGAAG | 2 cut(s) | 732, 1863 |
| Eco81I | CCTNAGG | 1 cut(s) | 960 |
| Eco88I | CYCGRG | 1 cut(s) | 415 |
| EcoRII | CCWGG | 2 cut(s) | 420, 733 |
| EcoT14I | CCWWGG | 1 cut(s) | 1071 |
| EcoT22I | ATGCAT | 1 cut(s) | 1141 |
| ErhI | CCWWGG | 1 cut(s) | 1071 |
| Esp3I | CGTCTC | 2 cut(s) | 1557, 1644 |
| FaeI | CATG | 7 cut(s) | 55, 136, 788, 1143, 1295, 1730, 1778 |
| FaqI | GGGAC | 2 cut(s) | 782, 1890 |
| FatI | CATG | 7 cut(s) | 51, 132, 784, 1139, 1291, 1726, 1774 |
| FauI | CCCGC | 4 cut(s) | 368, 474, 789, 812 |
| FblI | GTMKAC | 1 cut(s) | 908 |
| FokI | GGATG | 8 cut(s) | 397, 966, 977, 1067, 1267, 1358, 1588, 1775 |
| GlaI | GCGC | 1 cut(s) | 728 |
| GsaI | CCCAGC | 1 cut(s) | 681 |
| HaeIII | GGCC | 6 cut(s) | 37, 420, 739, 884, 958, 1299 |
| HapII | CCGG | 7 cut(s) | 88, 192, 416, 550, 808, 889, 1612 |
| HgaI | GACGC | 2 cut(s) | 336, 1574 |
| HhaI | GCGC | 1 cut(s) | 729 |
| Hin1II | CATG | 7 cut(s) | 55, 136, 788, 1143, 1295, 1730, 1778 |
| Hin6I | GCGC | 1 cut(s) | 727 |
| HinP1I | GCGC | 1 cut(s) | 727 |
| HincII | GTYRAC | 2 cut(s) | 1198, 1547 |
| HindII | GTYRAC | 2 cut(s) | 1198, 1547 |
| HinfI | GANTC | 5 cut(s) | 12, 310, 1080, 1345, 1921 |
| HpaI | GTTAAC | 1 cut(s) | 1198 |
| HpaII | CCGG | 7 cut(s) | 88, 192, 416, 550, 808, 889, 1612 |
| HphI | GGTGA | 3 cut(s) | 363, 387, 765 |
| Hpy166II | GTNNAC | 6 cut(s) | 95, 628, 909, 1198, 1428, 1547 |
| Hpy188III | TCNNGA | 6 cut(s) | 133, 314, 922, 1489, 1664, 1775 |
| Hpy8I | GTNNAC | 6 cut(s) | 95, 628, 909, 1198, 1428, 1547 |
| Hpy99I | CGWCG | 1 cut(s) | 907 |
| HpyCH4III | ACNGT | 5 cut(s) | 157, 221, 525, 1451, 1655 |
| HpyF3I | CTNAG | 5 cut(s) | 165, 960, 1397, 1422, 1798 |
| Hsp92II | CATG | 7 cut(s) | 55, 136, 788, 1143, 1295, 1730, 1778 |
| HspAI | GCGC | 1 cut(s) | 727 |
| KspAI | GTTAAC | 1 cut(s) | 1198 |
| KspI | CCGCGG | 1 cut(s) | 1915 |
| LmnI | GCTCC | 1 cut(s) | 1888 |
| LweI | GCATC | 6 cut(s) | 419, 595, 955, 1447, 1547, 1807 |
| MaeIII | GTNAC | 3 cut(s) | 365, 1306, 1378 |
| MbiI | CCGCTC | 2 cut(s) | 469, 513 |
| MboII | GAAGA | 9 cut(s) | 227, 338, 342, 435, 541, 1255, 1466, 1615, 1921 |
| MfeI | CAATTG | 1 cut(s) | 1631 |
| MflI | RGATCY | 3 cut(s) | 84, 789, 1418 |
| MhlI | GDGCHC | 1 cut(s) | 1430 |
| MlyI | GAGTC | 2 cut(s) | 304, 1354 |
| MmeI | TCCRAC | 2 cut(s) | 540, 1396 |
| Mph1103I | ATGCAT | 1 cut(s) | 1141 |
| MroXI | GAANNNNTTC | 2 cut(s) | 717, 1925 |
| MseI | TTAA | 2 cut(s) | 1065, 1197 |
| MspA1I | CMGCKG | 2 cut(s) | 623, 1914 |
| MspI | CCGG | 7 cut(s) | 88, 192, 416, 550, 808, 889, 1612 |
| MspR9I | CCNGG | 4 cut(s) | 416, 417, 422, 735 |
| MunI | CAATTG | 1 cut(s) | 1631 |
| Mva1269I | GAATGC | 2 cut(s) | 1621, 1813 |
| MvaI | CCWGG | 2 cut(s) | 422, 735 |
| MvnI | CGCG | 4 cut(s) | 727, 742, 751, 1914 |
| NciI | CCSGG | 2 cut(s) | 416, 417 |
| NlaIII | CATG | 7 cut(s) | 55, 136, 788, 1143, 1295, 1730, 1778 |
| NlaIV | GGNNCC | 5 cut(s) | 154, 755, 791, 1227, 1657 |
| NmuCI | GTSAC | 1 cut(s) | 1306 |
| NsiI | ATGCAT | 1 cut(s) | 1141 |
| NspI | RCATGY | 1 cut(s) | 1730 |
| PagI | TCATGA | 2 cut(s) | 132, 1774 |
| PceI | AGGCCT | 1 cut(s) | 37 |
| PciI | ACATGT | 1 cut(s) | 1726 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1089 |
| PctI | GAATGC | 2 cut(s) | 1621, 1813 |
| PdmI | GAANNNNTTC | 2 cut(s) | 717, 1925 |
| PfeI | GAWTC | 3 cut(s) | 12, 1080, 1921 |
| PleI | GAGTC | 2 cut(s) | 304, 1353 |
| PpsI | GAGTC | 2 cut(s) | 304, 1353 |
| PscI | ACATGT | 1 cut(s) | 1726 |
| PsiI | TTATAA | 1 cut(s) | 183 |
| Psp6I | CCWGG | 2 cut(s) | 420, 733 |
| PspFI | CCCAGC | 1 cut(s) | 677 |
| PspGI | CCWGG | 2 cut(s) | 420, 733 |
| PspN4I | GGNNCC | 5 cut(s) | 154, 755, 791, 1227, 1657 |
| PspPI | GGNCC | 6 cut(s) | 118, 418, 737, 810, 883, 894 |
| PstI | CTGCAG | 2 cut(s) | 82, 622 |
| PsuI | RGATCY | 3 cut(s) | 84, 789, 1418 |
| RsaI | GTAC | 7 cut(s) | 265, 627, 675, 1086, 1108, 1114, 1720 |
| RsaNI | GTAC | 7 cut(s) | 264, 626, 674, 1085, 1107, 1113, 1719 |
| SacII | CCGCGG | 1 cut(s) | 1915 |
| SaqAI | TTAA | 2 cut(s) | 1065, 1197 |
| Sau96I | GGNCC | 6 cut(s) | 118, 418, 737, 810, 883, 894 |
| ScaI | AGTACT | 1 cut(s) | 265 |
| SchI | GAGTC | 2 cut(s) | 304, 1354 |
| ScrFI | CCNGG | 4 cut(s) | 416, 417, 422, 735 |
| SduI | GDGCHC | 1 cut(s) | 1430 |
| SfaNI | GCATC | 6 cut(s) | 419, 595, 955, 1447, 1547, 1807 |
| SfcI | CTRYAG | 3 cut(s) | 78, 387, 618 |
| Sfr303I | CCGCGG | 1 cut(s) | 1915 |
| SgrBI | CCGCGG | 1 cut(s) | 1915 |
| SinI | GGWCC | 3 cut(s) | 118, 810, 894 |
| SmaI | CCCGGG | 1 cut(s) | 417 |
| SmlI | CTYRAG | 7 cut(s) | 312, 508, 650, 669, 972, 1487, 1664 |
| SmoI | CTYRAG | 7 cut(s) | 312, 508, 650, 669, 972, 1487, 1664 |
| SpeI | ACTAGT | 3 cut(s) | 251, 272, 293 |
| SseBI | AGGCCT | 1 cut(s) | 37 |
| StuI | AGGCCT | 1 cut(s) | 37 |
| StyD4I | CCNGG | 4 cut(s) | 414, 415, 420, 733 |
| StyI | CCWWGG | 1 cut(s) | 1071 |
| TaaI | ACNGT | 5 cut(s) | 157, 221, 525, 1451, 1655 |
| TaqI | TCGA | 3 cut(s) | 527, 921, 1626 |
| TatI | WGTACW | 3 cut(s) | 263, 1106, 1112 |
| TauI | GCSGC | 2 cut(s) | 742, 1898 |
| TfiI | GAWTC | 3 cut(s) | 12, 1080, 1921 |
| Tru1I | TTAA | 2 cut(s) | 1065, 1197 |
| Tru9I | TTAA | 2 cut(s) | 1065, 1197 |
| TscAI | CASTG | 3 cut(s) | 954, 1430, 1717 |
| TseFI | GTSAC | 1 cut(s) | 1306 |
| Tsp45I | GTSAC | 1 cut(s) | 1306 |
| TspDTI | ATGAA | 8 cut(s) | 121, 149, 1250, 1344, 1716, 1777, 1791, 1833 |
| TspMI | CCCGGG | 1 cut(s) | 415 |
| TspRI | CASTG | 3 cut(s) | 954, 1430, 1717 |
| VneI | GTGCAC | 1 cut(s) | 1426 |
| VpaK11BI | GGWCC | 3 cut(s) | 118, 810, 894 |
| XapI | RAATTY | 5 cut(s) | 694, 1038, 1528, 1765, 1783 |
| XceI | RCATGY | 1 cut(s) | 1730 |
| XmaI | CCCGGG | 1 cut(s) | 415 |
| XmiI | GTMKAC | 1 cut(s) | 908 |
| XmnI | GAANNNNTTC | 2 cut(s) | 717, 1925 |
| ZrmI | AGTACT | 1 cut(s) | 265 |
| Zsp2I | ATGCAT | 1 cut(s) | 1141 |