Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021255

Physical Location & Seq

Genomic Coordinates Reverse (-)

15298618 .. 15302727

Gene Structure 4110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGATCAACAAGATAGAGCAATCCGCAGGATCATTGGTGAATTTATCCAAAATGATTTTGAAGCTTACTACTGATACAATTTGTATAATTGCTCTGAGGAGGAAGTATAACAGTGAATCTCCAGACGGGAAGATGATCGAGGAGCTTTTGAAAGAGTTCAATTGGTTAATGGGATGCCCCAATATTGGTGATGTGATCCCATGGCTTGCTTGGTTAAGCCATTTTAATGGTTTCAACGCTAAACTAGACAAGGTGCTAAACAGTTGGATGACTTTTTGGATGCATGGAGTGGTTCAGGAGCATGTGAATCATCGATCAAATAGTAGTGCAAGAATTGATCATGACCATGTAGATCATATTGGACCTATTGGTGAAGATCAGACGACCGAGGAGGACCAGAAGAACTTTGTGGACGTTTTGCTTGAGATTCAAGATATGTTTTCTGGTGGTACTGATACCACATATACAGTCTTGGAGTGGGCTATGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005911 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0009058 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0055044 GO:0055114 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00980 ko01100 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00980 map01100 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

163

Amino Acids

18.66

Weight (kDa)

5.0

Isoelectric Point (pI)

50.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	1 - 162	2.3e-09	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021255)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g16800
rosa_chinensis	RchiOBHm_Chr7g0197321
rosa_multiflora	Rmu_co8291927.1_g000001
rosa_samantha	Rh7BG166300 Rh7DG165600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	2 cut(s)	37, 190
AcsI	RAATTY	1 cut(s)	40
AfaI	GTAC	1 cut(s)	451
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	5 cut(s)	61, 151, 160, 235, 431
AluBI	AGCT	2 cut(s)	64, 145
AluI	AGCT	2 cut(s)	64, 145
AlwI	GGATC	2 cut(s)	37, 190
ApoI	RAATTY	1 cut(s)	40
Asp700I	GAANNNNTTC	1 cut(s)	155
AspS9I	GGNCC	2 cut(s)	362, 394
AsuHPI	GGTGA	3 cut(s)	49, 200, 383
AvaII	GGWCC	2 cut(s)	362, 394
BclI	TGATCA	2 cut(s)	3, 337
BfaI	CTAG	1 cut(s)	245
Bme18I	GGWCC	2 cut(s)	362, 394
BmgT120I	GGNCC	2 cut(s)	362, 394
BmsI	GCATC	2 cut(s)	164, 270
BpmI	CTGGAG	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	443
Bsa29I	ATCGAT	1 cut(s)	313
BsaJI	CCNNGG	2 cut(s)	200, 387
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
BseCI	ATCGAT	1 cut(s)	313
BseDI	CCNNGG	2 cut(s)	200, 387
BseGI	GGATG	3 cut(s)	179, 273, 285
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMII	CTCAG	1 cut(s)	86
BseRI	GAGGAG	3 cut(s)	112, 155, 404
Bsh1285I	CGRYCG	1 cut(s)	387
BshVI	ATCGAT	1 cut(s)	313
BsiEI	CGRYCG	1 cut(s)	387
BslI	CCNNNNNNNGG	1 cut(s)	185
Bsp143I	GATC	9 cut(s)	3, 29, 135, 195, 314, 337, 352, 376, 486
Bsp19I	CCATGG	1 cut(s)	200
BspACI	CCGC	1 cut(s)	24
BspCNI	CTCAG	1 cut(s)	87
BspDI	ATCGAT	1 cut(s)	313
BspHI	TCATGA	1 cut(s)	340
BspPI	GGATC	2 cut(s)	37, 190
BssECI	CCNNGG	2 cut(s)	200, 387
BssMI	GATC	9 cut(s)	3, 29, 135, 195, 314, 337, 352, 376, 486
BssT1I	CCWWGG	1 cut(s)	200
Bst4CI	ACNGT	3 cut(s)	113, 263, 469
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	1 cut(s)	95
BstDSI	CCRYGG	1 cut(s)	200
BstF5I	GGATG	3 cut(s)	179, 273, 285
BstKTI	GATC	9 cut(s)	6, 32, 138, 198, 317, 340, 355, 379, 489
BstMBI	GATC	9 cut(s)	3, 29, 135, 195, 314, 337, 352, 376, 486
BstMCI	CGRYCG	1 cut(s)	387
BstNSI	RCATGY	1 cut(s)	305
BstXI	CCANNNNNNTGG	1 cut(s)	227
Bsu15I	ATCGAT	1 cut(s)	313
BsuTUI	ATCGAT	1 cut(s)	313
BtgI	CCRYGG	1 cut(s)	200
BtsCI	GGATG	3 cut(s)	179, 273, 285
BtsIMutI	CAGTG	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	207
CciI	TCATGA	1 cut(s)	340
Cfr13I	GGNCC	2 cut(s)	362, 394
ClaI	ATCGAT	1 cut(s)	313
Csp6I	GTAC	1 cut(s)	450
CviAII	CATG	5 cut(s)	201, 284, 302, 341, 347
CviJI	RGCY	5 cut(s)	64, 145, 205, 219, 482
CviKI_1	RGCY	5 cut(s)	64, 145, 205, 219, 482
CviQI	GTAC	1 cut(s)	450
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	9 cut(s)	5, 31, 137, 197, 316, 339, 354, 378, 488
DpnII	GATC	9 cut(s)	3, 29, 135, 195, 314, 337, 352, 376, 486
Eco130I	CCWWGG	1 cut(s)	200
Eco47I	GGWCC	2 cut(s)	362, 394
EcoT14I	CCWWGG	1 cut(s)	200
EcoT22I	ATGCAT	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	200
FaeI	CATG	5 cut(s)	204, 287, 305, 344, 350
FatI	CATG	5 cut(s)	200, 283, 301, 340, 346
FbaI	TGATCA	2 cut(s)	3, 337
FokI	GGATG	3 cut(s)	186, 280, 292
FspBI	CTAG	1 cut(s)	245
GsuI	CTGGAG	1 cut(s)	105
Hin1II	CATG	5 cut(s)	204, 287, 305, 344, 350
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	3 cut(s)	116, 307, 427
HphI	GGTGA	3 cut(s)	49, 200, 383
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	3 cut(s)	96, 381, 491
Hpy188III	TCNNGA	4 cut(s)	122, 296, 341, 431
Hpy8I	GTNNAC	1 cut(s)	412
HpyCH4III	ACNGT	3 cut(s)	113, 263, 469
HpyCH4IV	ACGT	1 cut(s)	414
HpyCH4V	TGCA	2 cut(s)	283, 329
HpyF3I	CTNAG	1 cut(s)	95
HpySE526I	ACGT	1 cut(s)	414
Hsp92II	CATG	5 cut(s)	204, 287, 305, 344, 350
Ksp22I	TGATCA	2 cut(s)	3, 337
Kzo9I	GATC	9 cut(s)	3, 29, 135, 195, 314, 337, 352, 376, 486
LmnI	GCTCC	2 cut(s)	142, 298
LpnPI	CCDG	5 cut(s)	12, 135, 281, 410, 429
LweI	GCATC	2 cut(s)	164, 270
MaeI	CTAG	1 cut(s)	245
MaeII	ACGT	1 cut(s)	414
MalI	GATC	9 cut(s)	5, 31, 137, 197, 316, 339, 354, 378, 488
MboI	GATC	9 cut(s)	3, 29, 135, 195, 314, 337, 352, 376, 486
MboII	GAAGA	3 cut(s)	142, 386, 412
MfeI	CAATTG	1 cut(s)	160
MluCI	AATT	5 cut(s)	40, 78, 87, 160, 333
MmeI	TCCRAC	1 cut(s)	245
MnlI	CCTC	5 cut(s)	90, 93, 133, 382, 385
Mph1103I	ATGCAT	1 cut(s)	285
MroXI	GAANNNNTTC	1 cut(s)	155
MseI	TTAA	3 cut(s)	167, 215, 225
MslI	CAYNNNNRTG	2 cut(s)	225, 345
MunI	CAATTG	1 cut(s)	160
NcoI	CCATGG	1 cut(s)	200
NdeII	GATC	9 cut(s)	3, 29, 135, 195, 314, 337, 352, 376, 486
NlaIII	CATG	5 cut(s)	204, 287, 305, 344, 350
NsiI	ATGCAT	1 cut(s)	285
NspI	RCATGY	1 cut(s)	305
PagI	TCATGA	1 cut(s)	340
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	3 cut(s)	116, 307, 427
PspPI	GGNCC	2 cut(s)	362, 394
RsaI	GTAC	1 cut(s)	451
RsaNI	GTAC	1 cut(s)	450
RseI	CAYNNNNRTG	2 cut(s)	225, 345
SaqAI	TTAA	3 cut(s)	167, 215, 225
Sau3AI	GATC	9 cut(s)	3, 29, 135, 195, 314, 337, 352, 376, 486
Sau96I	GGNCC	2 cut(s)	362, 394
SetI	ASST	5 cut(s)	66, 147, 255, 367, 417
SfaNI	GCATC	2 cut(s)	164, 270
SinI	GGWCC	2 cut(s)	362, 394
SmiMI	CAYNNNNRTG	2 cut(s)	225, 345
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	5 cut(s)	40, 78, 87, 160, 333
SsiI	CCGC	1 cut(s)	24
SspI	AATATT	1 cut(s)	184
SspMI	CTAG	1 cut(s)	245
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	3 cut(s)	113, 263, 469
TaiI	ACGT	1 cut(s)	417
TaqI	TCGA	2 cut(s)	138, 313
TaqII	GACCGA	1 cut(s)	401
TasI	AATT	5 cut(s)	40, 78, 87, 160, 333
TfiI	GAWTC	3 cut(s)	116, 307, 427
Tru1I	TTAA	3 cut(s)	167, 215, 225
Tru9I	TTAA	3 cut(s)	167, 215, 225
TscAI	CASTG	1 cut(s)	118
TspRI	CASTG	1 cut(s)	118
VpaK11BI	GGWCC	2 cut(s)	362, 394
XapI	RAATTY	1 cut(s)	40
XceI	RCATGY	1 cut(s)	305
XcmI	CCANNNNNNNNNTGG	1 cut(s)	207
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	1 cut(s)	245
Zsp2I	ATGCAT	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.