Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0021255

Physical Location & Seq

Genomic Coordinates Reverse (-)

12921478 .. 12921855

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG166300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGATCGAGGAGCTTTTGAAAGAGTTCAATTGGTTAATGGGATGCCCCAATATTGGTGATGTGATCCCATGGCTTGCTTGGTTAAGCCATTTTAATGGTTTCAACGCTAAACTAGACAAGGTTGCTAAACAGTTGGATGACTTTTTGGATGGAGTGGTTCAGGAGCATGAGAATCATCGATCAAATAGTAGTGCAAGAATTGATCATGACCATGTAGATCCTATTGGACCTATTGGTGAAGATCAGACGACCGAGGAGGACCAGAAGGACTTTGTGGACGTTTTGCTTGAGATTCAAGAAGGCGACTCTTCAAGTTACCATAAAGGCCCTCATATTGGTATGCATGTATTTTATGATTTTATATCTTCTACTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005911 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0009058 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0055044 GO:0055114 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00980 ko01100 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00980 map01100 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

125

Amino Acids

14.26

Weight (kDa)

4.52

Isoelectric Point (pI)

52.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021255)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g16800
rosa_chinensis	RchiOBHm_Chr7g0197321
rosa_multiflora	Rmu_co8291927.1_g000001
rosa_samantha	Rh7BG166300 Rh7DG165600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	58, 212
AfiI	CCNNNNNNNGG	2 cut(s)	53, 335
AgsI	TTSAA	5 cut(s)	19, 28, 103, 296, 312
AluBI	AGCT	1 cut(s)	13
AluI	AGCT	1 cut(s)	13
AlwI	GGATC	2 cut(s)	58, 212
AoxI	GGCC	1 cut(s)	325
Asp700I	GAANNNNTTC	1 cut(s)	23
AspS9I	GGNCC	3 cut(s)	227, 259, 326
AsuHPI	GGTGA	2 cut(s)	68, 248
AvaII	GGWCC	2 cut(s)	227, 259
BccI	CCATC	1 cut(s)	143
BclI	TGATCA	1 cut(s)	202
BfaI	CTAG	1 cut(s)	113
Bme18I	GGWCC	2 cut(s)	227, 259
BmgT120I	GGNCC	3 cut(s)	227, 259, 326
BmsI	GCATC	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	308
Bsa29I	ATCGAT	1 cut(s)	178
BsaJI	CCNNGG	2 cut(s)	68, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 335
BseCI	ATCGAT	1 cut(s)	178
BseDI	CCNNGG	2 cut(s)	68, 252
BseGI	GGATG	3 cut(s)	47, 142, 154
BseLI	CCNNNNNNNGG	2 cut(s)	53, 335
BseRI	GAGGAG	2 cut(s)	23, 269
Bsh1285I	CGRYCG	1 cut(s)	252
BshFI	GGCC	1 cut(s)	327
BshVI	ATCGAT	1 cut(s)	178
BsiEI	CGRYCG	1 cut(s)	252
BslI	CCNNNNNNNGG	2 cut(s)	53, 335
BsnI	GGCC	1 cut(s)	327
Bsp143I	GATC	6 cut(s)	3, 63, 179, 202, 217, 241
Bsp19I	CCATGG	1 cut(s)	68
BspANI	GGCC	1 cut(s)	327
BspDI	ATCGAT	1 cut(s)	178
BspHI	TCATGA	1 cut(s)	205
BspPI	GGATC	2 cut(s)	58, 212
BssECI	CCNNGG	2 cut(s)	68, 252
BssMI	GATC	6 cut(s)	3, 63, 179, 202, 217, 241
BssT1I	CCWWGG	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	132
Bst6I	CTCTTC	1 cut(s)	313
BstC8I	GCNNGC	1 cut(s)	75
BstDSI	CCRYGG	1 cut(s)	68
BstF5I	GGATG	3 cut(s)	47, 142, 154
BstKTI	GATC	6 cut(s)	6, 66, 182, 205, 220, 244
BstMBI	GATC	6 cut(s)	3, 63, 179, 202, 217, 241
BstMCI	CGRYCG	1 cut(s)	252
BstNSI	RCATGY	1 cut(s)	347
BstX2I	RGATCY	1 cut(s)	217
BstXI	CCANNNNNNTGG	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	217
Bsu15I	ATCGAT	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	327
BsuTUI	ATCGAT	1 cut(s)	178
BtgI	CCRYGG	1 cut(s)	68
BtsCI	GGATG	3 cut(s)	47, 142, 154
Cac8I	GCNNGC	1 cut(s)	75
CciI	TCATGA	1 cut(s)	205
Cfr13I	GGNCC	3 cut(s)	227, 259, 326
ClaI	ATCGAT	1 cut(s)	178
CviAII	CATG	5 cut(s)	69, 167, 206, 212, 344
CviJI	RGCY	4 cut(s)	13, 73, 87, 327
CviKI_1	RGCY	4 cut(s)	13, 73, 87, 327
DpnI	GATC	6 cut(s)	5, 65, 181, 204, 219, 243
DpnII	GATC	6 cut(s)	3, 63, 179, 202, 217, 241
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	68
Eco47I	GGWCC	2 cut(s)	227, 259
EcoO109I	RGGNCCY	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	68
EcoT22I	ATGCAT	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	5 cut(s)	72, 170, 209, 215, 347
FatI	CATG	5 cut(s)	68, 166, 205, 211, 343
FbaI	TGATCA	1 cut(s)	202
FokI	GGATG	3 cut(s)	54, 149, 161
FspBI	CTAG	1 cut(s)	113
HaeIII	GGCC	1 cut(s)	327
Hin1II	CATG	5 cut(s)	72, 170, 209, 215, 347
HinfI	GANTC	3 cut(s)	172, 292, 305
HphI	GGTGA	2 cut(s)	68, 248
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	1 cut(s)	246
Hpy188III	TCNNGA	3 cut(s)	161, 206, 296
Hpy8I	GTNNAC	1 cut(s)	277
HpyAV	CCTTC	2 cut(s)	259, 293
HpyCH4III	ACNGT	1 cut(s)	132
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	2 cut(s)	194, 343
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	5 cut(s)	72, 170, 209, 215, 347
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	6 cut(s)	3, 63, 179, 202, 217, 241
LmnI	GCTCC	2 cut(s)	10, 163
LpnPI	CCDG	2 cut(s)	146, 275
LweI	GCATC	1 cut(s)	32
MaeI	CTAG	1 cut(s)	113
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	6 cut(s)	5, 65, 181, 204, 219, 243
MboI	GATC	6 cut(s)	3, 63, 179, 202, 217, 241
MboII	GAAGA	3 cut(s)	251, 300, 357
MfeI	CAATTG	1 cut(s)	28
MflI	RGATCY	1 cut(s)	217
MluCI	AATT	2 cut(s)	28, 198
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	3 cut(s)	247, 250, 339
Mph1103I	ATGCAT	1 cut(s)	345
MroXI	GAANNNNTTC	1 cut(s)	23
MseI	TTAA	3 cut(s)	35, 83, 93
MslI	CAYNNNNRTG	2 cut(s)	93, 210
MunI	CAATTG	1 cut(s)	28
NcoI	CCATGG	1 cut(s)	68
NdeII	GATC	6 cut(s)	3, 63, 179, 202, 217, 241
NlaIII	CATG	5 cut(s)	72, 170, 209, 215, 347
NsiI	ATGCAT	1 cut(s)	345
NspI	RCATGY	1 cut(s)	347
PagI	TCATGA	1 cut(s)	205
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	172, 292
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
PspPI	GGNCC	3 cut(s)	227, 259, 326
PsuI	RGATCY	1 cut(s)	217
RseI	CAYNNNNRTG	2 cut(s)	93, 210
SaqAI	TTAA	3 cut(s)	35, 83, 93
Sau3AI	GATC	6 cut(s)	3, 63, 179, 202, 217, 241
Sau96I	GGNCC	3 cut(s)	227, 259, 326
SchI	GAGTC	1 cut(s)	299
SetI	ASST	4 cut(s)	15, 123, 232, 282
SfaNI	GCATC	1 cut(s)	32
SinI	GGWCC	2 cut(s)	227, 259
SmiMI	CAYNNNNRTG	2 cut(s)	93, 210
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	2 cut(s)	28, 198
SspI	AATATT	1 cut(s)	52
SspMI	CTAG	1 cut(s)	113
StyI	CCWWGG	1 cut(s)	68
TaaI	ACNGT	1 cut(s)	132
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	2 cut(s)	6, 178
TaqII	GACCGA	1 cut(s)	266
TasI	AATT	2 cut(s)	28, 198
TfiI	GAWTC	2 cut(s)	172, 292
Tru1I	TTAA	3 cut(s)	35, 83, 93
Tru9I	TTAA	3 cut(s)	35, 83, 93
VpaK11BI	GGWCC	2 cut(s)	227, 259
XceI	RCATGY	1 cut(s)	347
XcmI	CCANNNNNNNNNTGG	1 cut(s)	75
XmnI	GAANNNNTTC	1 cut(s)	23
XspI	CTAG	1 cut(s)	113
Zsp2I	ATGCAT	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.