Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8291927.1

Orthogroup ID

OG0021255

Physical Location & Seq

Genomic Coordinates Reverse (-)

344 .. 845

Gene Structure 502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8291927.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atgatcaacaagatagagcaatccgcaggatcattggtgaatttatccaaaatgattttgaagcttactactgatacaatttgtataattgctctgaggaggaagtataacagtgaatctccagacgggaagatgatcgaggagcttttgaaagagttcaattggttaatgggatgccccaatattggtgatgtgatcccatggcttgcttggttaagccattttaatggtttcaacgctaaactagacaaggttgctaaacagttggatgactttttggatgcatggagtggttcaggagcatatcatattggacctattggtgaagatcagacgaccgaggaggaccagaaggactttgtggacgttttgcttgagattcaagaaggcgactcttcaagttaccataaaggccctcatatattttatgattttatatcttctactctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005911 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0009058 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0055044 GO:0055114 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00980 ko01100 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00980 map01100 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

150

Amino Acids

16.91

Weight (kDa)

4.68

Isoelectric Point (pI)

61.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021255)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g16800
rosa_chinensis	RchiOBHm_Chr7g0197321
rosa_multiflora	Rmu_co8291927.1_g000001
rosa_samantha	Rh7BG166300 Rh7DG165600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	2 cut(s)	37, 190
AcsI	RAATTY	1 cut(s)	40
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	6 cut(s)	61, 151, 160, 235, 383, 399
AluBI	AGCT	2 cut(s)	64, 145
AluI	AGCT	2 cut(s)	64, 145
AlwI	GGATC	2 cut(s)	37, 190
AoxI	GGCC	1 cut(s)	412
ApoI	RAATTY	1 cut(s)	40
Asp700I	GAANNNNTTC	1 cut(s)	155
AspS9I	GGNCC	3 cut(s)	314, 346, 413
AsuHPI	GGTGA	3 cut(s)	49, 200, 335
AvaII	GGWCC	2 cut(s)	314, 346
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	1 cut(s)	245
Bme18I	GGWCC	2 cut(s)	314, 346
BmgT120I	GGNCC	3 cut(s)	314, 346, 413
BmsI	GCATC	2 cut(s)	164, 271
BpmI	CTGGAG	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	395
BsaJI	CCNNGG	2 cut(s)	200, 339
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
BseDI	CCNNGG	2 cut(s)	200, 339
BseGI	GGATG	3 cut(s)	179, 274, 286
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMII	CTCAG	1 cut(s)	86
BseRI	GAGGAG	3 cut(s)	112, 155, 356
Bsh1285I	CGRYCG	1 cut(s)	339
BshFI	GGCC	1 cut(s)	414
BsiEI	CGRYCG	1 cut(s)	339
BslI	CCNNNNNNNGG	1 cut(s)	185
BsnI	GGCC	1 cut(s)	414
Bsp143I	GATC	5 cut(s)	3, 29, 135, 195, 328
Bsp19I	CCATGG	1 cut(s)	200
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	414
BspCNI	CTCAG	1 cut(s)	87
BspPI	GGATC	2 cut(s)	37, 190
BssECI	CCNNGG	2 cut(s)	200, 339
BssMI	GATC	5 cut(s)	3, 29, 135, 195, 328
BssT1I	CCWWGG	1 cut(s)	200
Bst4CI	ACNGT	2 cut(s)	113, 264
Bst6I	CTCTTC	1 cut(s)	400
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	1 cut(s)	95
BstDSI	CCRYGG	1 cut(s)	200
BstF5I	GGATG	3 cut(s)	179, 274, 286
BstKTI	GATC	5 cut(s)	6, 32, 138, 198, 331
BstMBI	GATC	5 cut(s)	3, 29, 135, 195, 328
BstMCI	CGRYCG	1 cut(s)	339
BstXI	CCANNNNNNTGG	1 cut(s)	227
BsuRI	GGCC	1 cut(s)	414
BtgI	CCRYGG	1 cut(s)	200
BtsCI	GGATG	3 cut(s)	179, 274, 286
BtsIMutI	CAGTG	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	207
Cfr13I	GGNCC	3 cut(s)	314, 346, 413
CviAII	CATG	2 cut(s)	201, 285
CviJI	RGCY	5 cut(s)	64, 145, 205, 219, 414
CviKI_1	RGCY	5 cut(s)	64, 145, 205, 219, 414
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	5 cut(s)	5, 31, 137, 197, 330
DpnII	GATC	5 cut(s)	3, 29, 135, 195, 328
Eam1104I	CTCTTC	1 cut(s)	400
EarI	CTCTTC	1 cut(s)	400
Eco130I	CCWWGG	1 cut(s)	200
Eco47I	GGWCC	2 cut(s)	314, 346
EcoO109I	RGGNCCY	1 cut(s)	413
EcoT14I	CCWWGG	1 cut(s)	200
EcoT22I	ATGCAT	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	200
FaeI	CATG	2 cut(s)	204, 288
FatI	CATG	2 cut(s)	200, 284
FbaI	TGATCA	1 cut(s)	3
FokI	GGATG	3 cut(s)	186, 281, 293
FspBI	CTAG	1 cut(s)	245
GsuI	CTGGAG	1 cut(s)	105
HaeIII	GGCC	1 cut(s)	414
Hin1II	CATG	2 cut(s)	204, 288
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	3 cut(s)	116, 379, 392
HphI	GGTGA	3 cut(s)	49, 200, 335
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	2 cut(s)	96, 333
Hpy188III	TCNNGA	3 cut(s)	122, 297, 383
Hpy8I	GTNNAC	1 cut(s)	364
HpyAV	CCTTC	2 cut(s)	346, 380
HpyCH4III	ACNGT	2 cut(s)	113, 264
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	1 cut(s)	284
HpyF3I	CTNAG	1 cut(s)	95
HpySE526I	ACGT	1 cut(s)	366
Hsp92II	CATG	2 cut(s)	204, 288
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	5 cut(s)	3, 29, 135, 195, 328
LmnI	GCTCC	2 cut(s)	142, 299
LpnPI	CCDG	4 cut(s)	12, 135, 282, 362
LweI	GCATC	2 cut(s)	164, 271
MaeI	CTAG	1 cut(s)	245
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	5 cut(s)	5, 31, 137, 197, 330
MboI	GATC	5 cut(s)	3, 29, 135, 195, 328
MboII	GAAGA	4 cut(s)	142, 338, 387, 432
MfeI	CAATTG	1 cut(s)	160
MluCI	AATT	4 cut(s)	40, 78, 87, 160
MlyI	GAGTC	1 cut(s)	386
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	6 cut(s)	90, 93, 133, 334, 337, 426
Mph1103I	ATGCAT	1 cut(s)	286
MroXI	GAANNNNTTC	1 cut(s)	155
MseI	TTAA	3 cut(s)	167, 215, 225
MslI	CAYNNNNRTG	1 cut(s)	225
MunI	CAATTG	1 cut(s)	160
NcoI	CCATGG	1 cut(s)	200
NdeII	GATC	5 cut(s)	3, 29, 135, 195, 328
NlaIII	CATG	2 cut(s)	204, 288
NsiI	ATGCAT	1 cut(s)	286
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	2 cut(s)	116, 379
PleI	GAGTC	1 cut(s)	386
PpsI	GAGTC	1 cut(s)	386
PspPI	GGNCC	3 cut(s)	314, 346, 413
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	3 cut(s)	167, 215, 225
Sau3AI	GATC	5 cut(s)	3, 29, 135, 195, 328
Sau96I	GGNCC	3 cut(s)	314, 346, 413
SchI	GAGTC	1 cut(s)	386
SetI	ASST	5 cut(s)	66, 147, 255, 319, 369
SfaNI	GCATC	2 cut(s)	164, 271
SinI	GGWCC	2 cut(s)	314, 346
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	4 cut(s)	40, 78, 87, 160
SsiI	CCGC	1 cut(s)	24
SspI	AATATT	1 cut(s)	184
SspMI	CTAG	1 cut(s)	245
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	2 cut(s)	113, 264
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	1 cut(s)	138
TaqII	GACCGA	1 cut(s)	353
TasI	AATT	4 cut(s)	40, 78, 87, 160
TfiI	GAWTC	2 cut(s)	116, 379
Tru1I	TTAA	3 cut(s)	167, 215, 225
Tru9I	TTAA	3 cut(s)	167, 215, 225
TscAI	CASTG	1 cut(s)	118
TspRI	CASTG	1 cut(s)	118
VpaK11BI	GGWCC	2 cut(s)	314, 346
XapI	RAATTY	1 cut(s)	40
XcmI	CCANNNNNNNNNTGG	1 cut(s)	207
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	1 cut(s)	245
Zsp2I	ATGCAT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.