RchiOBHm_Chr7g0213221

MOB kinase activator-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0016549
Physical Location & Seq
Reverse (-)
30339071 .. 30344911
5841 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 648 bp
ATGAGTCTCTTTGGGCTCGGCAGAAACCAGAGGACATTCCGCCCAAAAAAAAGCGCCCCTTCTGGGAGTAAGGGGGCTCAGCTGAGAAAGCACATTGACGCAACACTAGGCAGTGGGAACCTAAGAGAAGCAGTAAAGCTTCCAACTGGAGAAGATTTAAATGAGTGGCTTGCTGTCAACACTGTGGATTTCTTCAATCAAGTCAACTTGTTATTTGGTACCCTCACAGAGTTCTGCACTCCAGAGAACTGTCCTACAATGACTGCAGGCCCCAAGTATGAGTATAGATGGGCAGATGGTGTACTAATTAAGAAACCTATTGAGGTTTCTGCTCCAAAATATGTTGAATATCTGATGGACTGGATTGAATCCCAACTTGATGATGAATCCATATTTCCTCAAAAGCTTGGCGCACCATTTCCCCCTAATTTCAGGGAGGTTGTGAAGACAATATTCAAAAGACTGTTCCGTGTATATGCTCACATATACCACTCTCATTTTCAGAAAATTGTGAGCCTCAAGGAGGAGGCCCATCTAAATACTTGCTTCAAGCATTTCATACTATTTACCTGTGAATTTGCGCTAATCGACAAGAAGGAGCTAGCTCCACTTCAAGAGCTTATAGAATCCATCATCGTTCCTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04111 ko04390 ko04391 ko04392 map04111 map04390 map04391 map04392
Pfam Domains
Protein Families
Mob1_phocein

Protein Analysis

215

Amino Acids

24.67

Weight (kDa)

7.68

Isoelectric Point (pI)

39.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mob1_phocein PF03637 34 - 204 4.8e-82 Mob1/phocein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016549)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19045
fragaria_vesca FvH4_5g23830 FvH4_5g23830
malus_domestica MD00G1000800.v1.1 MD06G1014300.v1.1
prunus_persica Prupe.5G022100_v2.0.a1 Prupe.5G022100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0213221
rosa_laevigata RLG00000002821
rosa_multiflora Rmu_ssc0000084.1_g000016
rosa_rugosa Rorug07G0140400 Rorug07G0140400
rosa_samantha Rh7DG280100
rosa_wichuraiana Rw7G023610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 218
AccB1I GGYRCC 1 cut(s) 218
AciI CCGC 1 cut(s) 40
AcsI RAATTY 1 cut(s) 575
AfaI GTAC 2 cut(s) 220, 303
AfiI CCNNNNNNNGG 2 cut(s) 63, 523
AgsI TTSAA 6 cut(s) 196, 347, 368, 457, 550, 614
AluBI AGCT 6 cut(s) 82, 139, 406, 601, 605, 619
AluI AGCT 6 cut(s) 82, 139, 406, 601, 605, 619
Alw26I GTCTC 1 cut(s) 11
AoxI GGCC 2 cut(s) 268, 528
ApoI RAATTY 1 cut(s) 575
Asp718I GGTACC 1 cut(s) 218
AspLEI GCGC 3 cut(s) 56, 413, 583
AspS9I GGNCC 2 cut(s) 269, 529
AsuNHI GCTAGC 1 cut(s) 601
BanI GGYRCC 1 cut(s) 218
BanII GRGCYC 2 cut(s) 18, 79
BbsI GAAGAC 1 cut(s) 452
BccI CCATC 5 cut(s) 282, 290, 349, 540, 638
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 2 cut(s) 107, 602
BfmI CTRYAG 1 cut(s) 264
BfoI RGCGCY 1 cut(s) 57
BlpI GCTNAGC 1 cut(s) 78
BmgT120I GGNCC 2 cut(s) 269, 529
BmiI GGNNCC 3 cut(s) 119, 220, 271
BmtI GCTAGC 1 cut(s) 605
BpiI GAAGAC 1 cut(s) 452
BpmI CTGGAG 2 cut(s) 168, 225
Bpu1102I GCTNAGC 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 503
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 523
Bse1I ACTGG 2 cut(s) 151, 365
BseLI CCNNNNNNNGG 2 cut(s) 63, 523
BseMII CTCAG 2 cut(s) 74, 92
BseNI ACTGG 2 cut(s) 151, 365
BseRI GAGGAG 1 cut(s) 539
BsgI GTGCAG 1 cut(s) 220
BshFI GGCC 2 cut(s) 270, 530
BshNI GGYRCC 1 cut(s) 218
BslI CCNNNNNNNGG 2 cut(s) 63, 523
BsmAI GTCTC 1 cut(s) 11
BsnI GGCC 2 cut(s) 270, 530
Bsp1286I GDGCHC 2 cut(s) 18, 79
Bsp1720I GCTNAGC 1 cut(s) 78
BspACI CCGC 1 cut(s) 40
BspANI GGCC 2 cut(s) 270, 530
BspCNI CTCAG 2 cut(s) 75, 91
BspLI GGNNCC 3 cut(s) 119, 220, 271
BspMAI CTGCAG 1 cut(s) 268
BspOI GCTAGC 1 cut(s) 605
BspT107I GGYRCC 1 cut(s) 218
BsrI ACTGG 2 cut(s) 151, 365
Bst4CI ACNGT 3 cut(s) 184, 251, 465
BstC8I GCNNGC 3 cut(s) 171, 268, 603
BstDEI CTNAG 3 cut(s) 78, 83, 122
BstENI CCTNNNNNAGG 1 cut(s) 521
BstH2I RGCGCY 1 cut(s) 57
BstHHI GCGC 3 cut(s) 56, 413, 583
BstMAI GTCTC 1 cut(s) 11
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstSFI CTRYAG 1 cut(s) 264
BstV2I GAAGAC 1 cut(s) 452
BsuRI GGCC 2 cut(s) 270, 530
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 2 cut(s) 118, 180
Cac8I GCNNGC 3 cut(s) 171, 268, 603
CfoI GCGC 3 cut(s) 56, 413, 583
Cfr13I GGNCC 2 cut(s) 269, 529
CseI GACGC 1 cut(s) 107
Csp6I GTAC 2 cut(s) 219, 302
CviQI GTAC 2 cut(s) 219, 302
DdeI CTNAG 3 cut(s) 78, 83, 122
DraI TTTAAA 1 cut(s) 159
EciI GGCGGA 1 cut(s) 29
Eco24I GRGCYC 2 cut(s) 18, 79
EcoNI CCTNNNNNAGG 1 cut(s) 521
EcoO109I RGGNCCY 1 cut(s) 269
EcoT38I GRGCYC 2 cut(s) 18, 79
FalI AAGNNNNNCTT 2 cut(s) 43, 75
FriOI GRGCYC 2 cut(s) 18, 79
FspBI CTAG 2 cut(s) 107, 602
GlaI GCGC 3 cut(s) 55, 412, 582
GsuI CTGGAG 2 cut(s) 168, 225
HaeII RGCGCY 1 cut(s) 57
HaeIII GGCC 2 cut(s) 270, 530
HgaI GACGC 1 cut(s) 107
HhaI GCGC 3 cut(s) 56, 413, 583
Hin6I GCGC 3 cut(s) 54, 411, 581
HinP1I GCGC 3 cut(s) 54, 411, 581
HincII GTYRAC 2 cut(s) 178, 205
HindII GTYRAC 2 cut(s) 178, 205
HindIII AAGCTT 2 cut(s) 137, 404
HinfI GANTC 4 cut(s) 4, 368, 386, 626
Hpy166II GTNNAC 3 cut(s) 178, 205, 302
Hpy188I TCNGA 2 cut(s) 354, 504
Hpy188III TCNNGA 2 cut(s) 242, 614
Hpy8I GTNNAC 3 cut(s) 178, 205, 302
HpyAV CCTTC 2 cut(s) 69, 589
HpyCH4III ACNGT 3 cut(s) 184, 251, 465
HpyCH4V TGCA 2 cut(s) 237, 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
HpyF3I CTNAG 3 cut(s) 78, 83, 122
HspAI GCGC 3 cut(s) 54, 411, 581
KpnI GGTACC 1 cut(s) 222
LmnI GCTCC 3 cut(s) 337, 598, 610
LpnPI CCDG 8 cut(s) 41, 48, 132, 252, 255, 346, 418, 583
MaeI CTAG 2 cut(s) 107, 602
MboII GAAGA 3 cut(s) 164, 184, 457
MhlI GDGCHC 2 cut(s) 18, 79
MluCI AATT 4 cut(s) 306, 427, 507, 575
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 167
MnlI CCTC 8 cut(s) 24, 233, 316, 408, 430, 517, 520, 527
MseI TTAA 2 cut(s) 158, 309
MspA1I CMGCKG 1 cut(s) 82
MwoI GCNNNNNNNGC 1 cut(s) 88
NheI GCTAGC 1 cut(s) 601
NlaIV GGNNCC 3 cut(s) 119, 220, 271
PfeI GAWTC 3 cut(s) 368, 386, 626
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PspN4I GGNNCC 3 cut(s) 119, 220, 271
PspPI GGNCC 2 cut(s) 269, 529
PstI CTGCAG 1 cut(s) 268
PvuII CAGCTG 1 cut(s) 82
RsaI GTAC 2 cut(s) 220, 303
RsaNI GTAC 2 cut(s) 219, 302
SaqAI TTAA 2 cut(s) 158, 309
Sau96I GGNCC 2 cut(s) 269, 529
SchI GAGTC 1 cut(s) 13
SduI GDGCHC 2 cut(s) 18, 79
SfcI CTRYAG 1 cut(s) 264
SmiI ATTTAAAT 1 cut(s) 159
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
Sse9I AATT 4 cut(s) 306, 427, 507, 575
SsiI CCGC 1 cut(s) 40
SspI AATATT 1 cut(s) 453
SspMI CTAG 2 cut(s) 107, 602
SwaI ATTTAAAT 1 cut(s) 159
TaaI ACNGT 3 cut(s) 184, 251, 465
TaqI TCGA 1 cut(s) 588
TasI AATT 4 cut(s) 306, 427, 507, 575
TatI WGTACW 1 cut(s) 301
TfiI GAWTC 3 cut(s) 368, 386, 626
Tru1I TTAA 2 cut(s) 158, 309
Tru9I TTAA 2 cut(s) 158, 309
TscAI CASTG 2 cut(s) 118, 187
TspDTI ATGAA 2 cut(s) 399, 547
TspGWI ACGGA 1 cut(s) 458
TspRI CASTG 2 cut(s) 118, 187
XagI CCTNNNNNAGG 1 cut(s) 521
XapI RAATTY 1 cut(s) 575
XspI CTAG 2 cut(s) 107, 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.