Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022816

Physical Location & Seq

Genomic Coordinates Reverse (-)

46781513 .. 46786286

Gene Structure 4774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 138 bp

ATGGTTGTAAAGAATCAATCAACCCCTCGTCAATCTGACAAGACTCCATCAAGAAGATTGCTTCAGGTCATTGGTTCTCATGGCAAAAAGAGCAAAGCAAATGAAAGCAAGTGCAAAGCTCACAAAATGACAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004438 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010035 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0023052 GO:0030258 GO:0031410 GO:0031668 GO:0031982 GO:0033554 GO:0034593 GO:0035556 GO:0042221 GO:0042578 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052629 GO:0052744 GO:0052866 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0080134 GO:0097708 GO:0104004 GO:0106018 GO:1901700 GO:1901701 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Myotub-related

Protein Analysis

45

Amino Acids

5.05

Weight (kDa)

10.82

Isoelectric Point (pI)

64.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022816)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0224571
rosa_laevigata	RLG00000024361
rosa_multiflora	Rmu_sc0000247.1_g000067
rosa_samantha	Rh2CG237300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	47
AluBI	AGCT	1 cut(s)	119
AluI	AGCT	1 cut(s)	119
BccI	CCATC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	1 cut(s)	90
CviAII	CATG	1 cut(s)	80
CviJI	RGCY	1 cut(s)	119
CviKI_1	RGCY	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	47
FaeI	CATG	1 cut(s)	83
FaiI	YATR	1 cut(s)	81
FatI	CATG	1 cut(s)	79
FspEI	CC	7 cut(s)	37, 38, 39, 50, 57, 60, 66
Hin1II	CATG	1 cut(s)	83
HinfI	GANTC	2 cut(s)	13, 43
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	1 cut(s)	51
HpyCH4V	TGCA	1 cut(s)	114
HpyF10VI	GCNNNNNNNGC	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	83
LpnPI	CCDG	1 cut(s)	50
MboII	GAAGA	1 cut(s)	66
MlyI	GAGTC	1 cut(s)	37
MnlI	CCTC	1 cut(s)	36
MwoI	GCNNNNNNNGC	1 cut(s)	90
NlaIII	CATG	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	13
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
SchI	GAGTC	1 cut(s)	37
SetI	ASST	2 cut(s)	69, 121
SgeI	CNNG	6 cut(s)	39, 52, 63, 77, 92, 121
TfiI	GAWTC	1 cut(s)	13
TspDTI	ATGAA	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.