Rmu_sc0000247.1_g000067

Uncharacterised protein family UPF0052

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000247.1
OG0022816
Physical Location & Seq
Reverse (-)
348974 .. 352984
4011 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000247.1_g000067.1.cds

Sequence Viewer

Length: 282 bp
atgaggccccgtttggttgaccggaatgttacgccctacccccaccgcccagccttcctcctcttcttctccggcgggactgcctgcaacggcgtcgttgaggagctcaagaatttcagcactcgctcccccacttgcttcacgtttccggcgaaggaggaagcactgccgagattctctgcgtcctcggacaacaagcatcagaatgttgaggacagagagcttgtgtcggtcccttttgatattccaagcacagctgccttgcatgaatcacactcgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0052

Protein Analysis

93

Amino Acids

10.4

Weight (kDa)

6.4

Isoelectric Point (pI)

53.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022816)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0224571
rosa_laevigata RLG00000024361
rosa_multiflora Rmu_sc0000247.1_g000067
rosa_samantha Rh2CG237300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 46, 75
AcsI RAATTY 1 cut(s) 112
AcyI GRCGYC 1 cut(s) 93
AluBI AGCT 3 cut(s) 106, 223, 257
AluI AGCT 3 cut(s) 106, 223, 257
Alw21I GWGCWC 1 cut(s) 108
AoxI GGCC 1 cut(s) 5
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 1 cut(s) 112
AspS9I GGNCC 2 cut(s) 6, 232
AvaII GGWCC 1 cut(s) 232
BanII GRGCYC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 244
BceAI ACGGC 1 cut(s) 106
BcgI CGANNNNNNTGC 2 cut(s) 76, 110
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
Bme18I GGWCC 1 cut(s) 232
BmgT120I GGNCC 2 cut(s) 6, 232
BmiI GGNNCC 2 cut(s) 8, 234
BmsI GCATC 1 cut(s) 208
BpuEI CTTGAG 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 186
BsaWI WCCGGW 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 186
BseRI GAGGAG 2 cut(s) 50, 116
BseXI GCAGC 1 cut(s) 244
BseYI CCCAGC 1 cut(s) 49
BshFI GGCC 1 cut(s) 7
BsiHKAI GWGCWC 1 cut(s) 108
BsiSI CCGG 3 cut(s) 22, 72, 149
BslFI GGGAC 2 cut(s) 91, 218
BsmFI GGGAC 2 cut(s) 91, 218
BsnI GGCC 1 cut(s) 7
Bsp1286I GDGCHC 1 cut(s) 108
BspACI CCGC 2 cut(s) 46, 75
BspANI GGCC 1 cut(s) 7
BspLI GGNNCC 2 cut(s) 8, 234
BssECI CCNNGG 1 cut(s) 186
BssNI GRCGYC 1 cut(s) 93
Bst6I CTCTTC 1 cut(s) 68
BstACI GRCGYC 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 244
BsuRI GGCC 1 cut(s) 7
BtsI GCAGTG 1 cut(s) 164
BtsIMutI CAGTG 1 cut(s) 164
Cac8I GCNNGC 1 cut(s) 85
Cfr13I GGNCC 2 cut(s) 6, 232
CseI GACGC 2 cut(s) 82, 171
CviAII CATG 1 cut(s) 266
CviJI RGCY 5 cut(s) 7, 53, 106, 223, 257
CviKI_1 RGCY 5 cut(s) 7, 53, 106, 223, 257
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
Ecl136II GAGCTC 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 108
Eco47I GGWCC 1 cut(s) 232
Eco53kI GAGCTC 1 cut(s) 106
EcoICRI GAGCTC 1 cut(s) 106
EcoO109I RGGNCCY 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 108
FaeI CATG 1 cut(s) 269
FaiI YATR 1 cut(s) 267
FaqI GGGAC 2 cut(s) 91, 218
FatI CATG 1 cut(s) 265
FauI CCCGC 1 cut(s) 68
Fnu4HI GCNGC 1 cut(s) 258
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 1 cut(s) 258
GluI GCNGC 1 cut(s) 258
GsaI CCCAGC 1 cut(s) 53
HaeIII GGCC 1 cut(s) 7
HapII CCGG 3 cut(s) 22, 72, 149
HgaI GACGC 2 cut(s) 82, 171
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 1 cut(s) 269
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HinfI GANTC 2 cut(s) 174, 269
HpaII CCGG 3 cut(s) 22, 72, 149
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 2 cut(s) 190, 204
Hpy188III TCNNGA 1 cut(s) 109
Hpy8I GTNNAC 1 cut(s) 19
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 2 cut(s) 64, 148
HpyCH4IV ACGT 1 cut(s) 143
HpyCH4V TGCA 2 cut(s) 87, 265
HpySE526I ACGT 1 cut(s) 143
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 1 cut(s) 269
LmnI GCTCC 2 cut(s) 103, 131
LpnPI CCDG 5 cut(s) 35, 63, 85, 97, 162
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 1 cut(s) 208
MaeII ACGT 1 cut(s) 143
MaeIII GTNAC 1 cut(s) 28
MboII GAAGA 2 cut(s) 55, 58
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 1 cut(s) 112
MnlI CCTC 6 cut(s) 68, 71, 94, 151, 196, 205
MslI CAYNNNNRTG 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 257
MspI CCGG 3 cut(s) 22, 72, 149
NlaIII CATG 1 cut(s) 269
NlaIV GGNNCC 2 cut(s) 8, 234
NmeAIII GCCGAG 1 cut(s) 195
PcsI WCGNNNNNNNCGW 1 cut(s) 149
PfeI GAWTC 2 cut(s) 174, 269
PkrI GCNGC 1 cut(s) 259
Psp124BI GAGCTC 1 cut(s) 108
PspFI CCCAGC 1 cut(s) 49
PspN4I GGNNCC 2 cut(s) 8, 234
PspPI GGNCC 2 cut(s) 6, 232
PvuII CAGCTG 1 cut(s) 257
RseI CAYNNNNRTG 1 cut(s) 204
SacI GAGCTC 1 cut(s) 108
SatI GCNGC 1 cut(s) 258
Sau96I GGNCC 2 cut(s) 6, 232
SduI GDGCHC 1 cut(s) 108
SetI ASST 4 cut(s) 108, 146, 225, 259
SfaNI GCATC 1 cut(s) 208
SinI GGWCC 1 cut(s) 232
SmiMI CAYNNNNRTG 1 cut(s) 204
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 1 cut(s) 112
SsiI CCGC 2 cut(s) 46, 75
SstI GAGCTC 1 cut(s) 108
TaiI ACGT 1 cut(s) 146
TaqII GACCGA 1 cut(s) 220
TasI AATT 1 cut(s) 112
TfiI GAWTC 2 cut(s) 174, 269
TscAI CASTG 1 cut(s) 171
TseI GCWGC 1 cut(s) 257
TspDTI ATGAA 1 cut(s) 282
TspRI CASTG 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 232
XapI RAATTY 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.