RLG00000024361

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
35116052 .. 35119989
3938 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024361

Sequence Viewer

Length: 312 bp
ATGTCACTATATTACTCTTTTTTAATATTGCCCTATCCCCGCCGCCTAACCTTCTGCCTCTTCTTCTCCGGCGGGACCGCCTGCAACGGCGTCTTTGAGGAGCTCAAGAATTTCACCACTGGCTCCCCCACTTGCTTCACGTTTCCGGCGACGGAGGAAGCACTGCCGAGATTCTCTGCGTCCTCGGACAACAAGCATCAGAATGTTGAGGACAGAGAGCTTGTGTCGAATTCACCTCTGCCTCCAGCTGAAATAGGTTCTCATGGCAAAAAGAGCAAAGCAAATGAAAGCAAGTGTAAAACTCACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.45

Weight (kDa)

8.39

Isoelectric Point (pI)

66.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022816)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0224571
rosa_laevigata RLG00000024361
rosa_multiflora Rmu_sc0000247.1_g000067
rosa_samantha Rh2CG237300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 40, 43, 72, 78
AcsI RAATTY 2 cut(s) 109, 229
AcyI GRCGYC 1 cut(s) 90
AluBI AGCT 3 cut(s) 103, 220, 248
AluI AGCT 3 cut(s) 103, 220, 248
Alw21I GWGCWC 1 cut(s) 105
ApoI RAATTY 2 cut(s) 109, 229
AspS9I GGNCC 1 cut(s) 75
AsuHPI GGTGA 2 cut(s) 106, 225
AvaII GGWCC 1 cut(s) 75
BanII GRGCYC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 105
BceAI ACGGC 1 cut(s) 103
BisI GCNGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 44
Bme18I GGWCC 1 cut(s) 75
BmgT120I GGNCC 1 cut(s) 75
BmiI GGNNCC 2 cut(s) 76, 124
BmsI GCATC 1 cut(s) 205
BpmI CTGGAG 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 89
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 183
Bse1I ACTGG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 183
BseNI ACTGG 1 cut(s) 124
BseRI GAGGAG 1 cut(s) 113
BsiHKAI GWGCWC 1 cut(s) 105
BsiSI CCGG 2 cut(s) 69, 146
BslFI GGGAC 1 cut(s) 88
BsmFI GGGAC 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 105
BspACI CCGC 4 cut(s) 40, 43, 72, 78
BspLI GGNNCC 2 cut(s) 76, 124
BsrI ACTGG 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 183
BssNI GRCGYC 1 cut(s) 90
Bst6I CTCTTC 1 cut(s) 65
BstACI GRCGYC 1 cut(s) 90
BstC8I GCNNGC 1 cut(s) 82
BstMWI GCNNNNNNNGC 1 cut(s) 273
BtsI GCAGTG 1 cut(s) 161
BtsIMutI CAGTG 2 cut(s) 117, 161
Cac8I GCNNGC 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 75
CseI GACGC 2 cut(s) 79, 168
CviAII CATG 1 cut(s) 263
CviJI RGCY 4 cut(s) 103, 123, 220, 248
CviKI_1 RGCY 4 cut(s) 103, 123, 220, 248
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Ecl136II GAGCTC 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 105
Eco47I GGWCC 1 cut(s) 75
Eco53kI GAGCTC 1 cut(s) 103
EcoICRI GAGCTC 1 cut(s) 103
EcoRI GAATTC 1 cut(s) 229
EcoT38I GRGCYC 1 cut(s) 105
FaeI CATG 1 cut(s) 266
FaiI YATR 2 cut(s) 10, 264
FaqI GGGAC 1 cut(s) 88
FatI CATG 1 cut(s) 262
FauI CCCGC 2 cut(s) 47, 65
Fnu4HI GCNGC 1 cut(s) 43
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 43
GluI GCNGC 1 cut(s) 43
GsuI CTGGAG 1 cut(s) 228
HapII CCGG 2 cut(s) 69, 146
HgaI GACGC 2 cut(s) 79, 168
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 1 cut(s) 266
HinfI GANTC 1 cut(s) 171
HpaII CCGG 2 cut(s) 69, 146
HphI GGTGA 2 cut(s) 106, 225
Hpy188I TCNGA 2 cut(s) 187, 201
Hpy188III TCNNGA 1 cut(s) 106
Hpy99I CGWCG 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 61
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 273
HpySE526I ACGT 1 cut(s) 140
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 1 cut(s) 266
LmnI GCTCC 2 cut(s) 100, 128
LpnPI CCDG 5 cut(s) 82, 94, 105, 159, 258
LweI GCATC 1 cut(s) 205
MaeII ACGT 1 cut(s) 140
MaeIII GTNAC 1 cut(s) 3
MboII GAAGA 2 cut(s) 52, 55
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 2 cut(s) 109, 229
MnlI CCTC 7 cut(s) 68, 91, 148, 193, 202, 246, 252
MseI TTAA 1 cut(s) 23
MslI CAYNNNNRTG 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 248
MspI CCGG 2 cut(s) 69, 146
MwoI GCNNNNNNNGC 1 cut(s) 273
NlaIII CATG 1 cut(s) 266
NlaIV GGNNCC 2 cut(s) 76, 124
NmeAIII GCCGAG 1 cut(s) 192
NmuCI GTSAC 1 cut(s) 3
PcsI WCGNNNNNNNCGW 1 cut(s) 146
PfeI GAWTC 1 cut(s) 171
PkrI GCNGC 1 cut(s) 44
Psp124BI GAGCTC 1 cut(s) 105
PspN4I GGNNCC 2 cut(s) 76, 124
PspPI GGNCC 1 cut(s) 75
PvuII CAGCTG 1 cut(s) 248
RseI CAYNNNNRTG 1 cut(s) 201
SacI GAGCTC 1 cut(s) 105
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 1 cut(s) 43
Sau96I GGNCC 1 cut(s) 75
SduI GDGCHC 1 cut(s) 105
SetI ASST 7 cut(s) 53, 105, 143, 222, 238, 250, 259
SfaNI GCATC 1 cut(s) 205
SinI GGWCC 1 cut(s) 75
SmiMI CAYNNNNRTG 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 2 cut(s) 109, 229
SsiI CCGC 4 cut(s) 40, 43, 72, 78
SspI AATATT 1 cut(s) 27
SstI GAGCTC 1 cut(s) 105
TaiI ACGT 1 cut(s) 143
TaqI TCGA 1 cut(s) 227
TasI AATT 2 cut(s) 109, 229
TauI GCSGC 1 cut(s) 45
TfiI GAWTC 1 cut(s) 171
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 2 cut(s) 124, 168
TseFI GTSAC 1 cut(s) 3
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 1 cut(s) 300
TspGWI ACGGA 1 cut(s) 167
TspRI CASTG 2 cut(s) 124, 168
VpaK11BI GGWCC 1 cut(s) 75
XapI RAATTY 2 cut(s) 109, 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.