RchiOBHm_Chr7g0224571

Belongs to the protein-tyrosine phosphatase family. Non-receptor class myotubularin subfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
46781513 .. 46786286
4774 bp
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UTR
Exon/CDS
Intron
PRQ20109

Sequence Viewer

Length: 138 bp
ATGGTTGTAAAGAATCAATCAACCCCTCGTCAATCTGACAAGACTCCATCAAGAAGATTGCTTCAGGTCATTGGTTCTCATGGCAAAAAGAGCAAAGCAAATGAAAGCAAGTGCAAAGCTCACAAAATGACAAAGTAA

Protein Analysis

45

Amino Acids

5.05

Weight (kDa)

10.82

Isoelectric Point (pI)

64.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0022816)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0224571
rosa_laevigata RLG00000024361
rosa_multiflora Rmu_sc0000247.1_g000067
rosa_samantha Rh2CG237300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 47
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
BccI CCATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 90
CviAII CATG 1 cut(s) 80
CviJI RGCY 1 cut(s) 119
CviKI_1 RGCY 1 cut(s) 119
Eco57I CTGAAG 1 cut(s) 47
FaeI CATG 1 cut(s) 83
FaiI YATR 1 cut(s) 81
FatI CATG 1 cut(s) 79
FspEI CC 7 cut(s) 37, 38, 39, 50, 57, 60, 66
Hin1II CATG 1 cut(s) 83
HinfI GANTC 2 cut(s) 13, 43
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 1 cut(s) 51
HpyCH4V TGCA 1 cut(s) 114
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
Hsp92II CATG 1 cut(s) 83
LpnPI CCDG 1 cut(s) 50
MboII GAAGA 1 cut(s) 66
MlyI GAGTC 1 cut(s) 37
MnlI CCTC 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 90
NlaIII CATG 1 cut(s) 83
PfeI GAWTC 1 cut(s) 13
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
SchI GAGTC 1 cut(s) 37
SetI ASST 2 cut(s) 69, 121
SgeI CNNG 6 cut(s) 39, 52, 63, 77, 92, 121
TfiI GAWTC 1 cut(s) 13
TspDTI ATGAA 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.