Rh2CG237300

Belongs to the protein-tyrosine phosphatase family. Non-receptor class myotubularin subfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
24523694 .. 24526872
3179 bp
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UTR
Exon/CDS
Intron
Rh2CG237300.1

Sequence Viewer

Length: 327 bp
ATGGCCCAATCTTCTTCTCGCCGTCAGCTTACAGAAATTGTGAGTTTCAAACCTATAATTATTGTTGAATTAAATGGATGTGGCATTGTTCTTATTAATACTGACGAGGCAGGTACCTTGATAGTCACCAATTTTCAGCTTCTTTTTCTGTGTGAGGGAACTAGAAATGTTATTCCGCTTGGCACAATACCTTTGGCAACAATTGATAAGTTCAACAAAATGGTTGTAAAGAATCAATCAACCCCTCGTCAATCTGACAAGACTCCATCAAGAAGATTGCTTCAGGTCATTGGTACGATTTCAGATGAATTATTTGTGTCGATTTAA

Protein Analysis

108

Amino Acids

11.92

Weight (kDa)

8.77

Isoelectric Point (pI)

39.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0022816)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0224571
rosa_laevigata RLG00000024361
rosa_multiflora Rmu_sc0000247.1_g000067
rosa_samantha Rh2CG237300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 101
Acc65I GGTACC 1 cut(s) 113
AccB1I GGYRCC 1 cut(s) 113
AciI CCGC 1 cut(s) 176
AcuI CTGAAG 1 cut(s) 266
AfaI GTAC 2 cut(s) 115, 295
AgsI TTSAA 3 cut(s) 49, 68, 214
AluBI AGCT 2 cut(s) 28, 139
AluI AGCT 2 cut(s) 28, 139
AoxI GGCC 1 cut(s) 3
AseI ATTAAT 1 cut(s) 96
Asp718I GGTACC 1 cut(s) 113
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 118
BanI GGYRCC 1 cut(s) 113
BccI CCATC 1 cut(s) 274
BceAI ACGGC 1 cut(s) 6
BfaI CTAG 1 cut(s) 162
BfuAI ACCTGC 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 115
BseGI GGATG 1 cut(s) 83
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 113
BsnI GGCC 1 cut(s) 5
BspACI CCGC 1 cut(s) 176
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 115
BspMI ACCTGC 1 cut(s) 101
BspT107I GGYRCC 1 cut(s) 113
BstF5I GGATG 1 cut(s) 83
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 83
BveI ACCTGC 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 2 cut(s) 114, 294
CviJI RGCY 3 cut(s) 5, 28, 139
CviKI_1 RGCY 3 cut(s) 5, 28, 139
CviQI GTAC 2 cut(s) 114, 294
Eco57I CTGAAG 1 cut(s) 266
FaiI YATR 1 cut(s) 56
FokI GGATG 1 cut(s) 90
FspBI CTAG 1 cut(s) 162
HaeIII GGCC 1 cut(s) 5
HinfI GANTC 2 cut(s) 232, 262
HphI GGTGA 1 cut(s) 118
Hpy188I TCNGA 2 cut(s) 256, 304
Hpy188III TCNNGA 1 cut(s) 270
KpnI GGTACC 1 cut(s) 117
LpnPI CCDG 2 cut(s) 96, 269
MaeI CTAG 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 124
MboII GAAGA 3 cut(s) 3, 6, 285
MfeI CAATTG 1 cut(s) 201
MluCI AATT 6 cut(s) 36, 57, 68, 130, 201, 308
MlyI GAGTC 1 cut(s) 256
MnlI CCTC 3 cut(s) 100, 148, 255
MseI TTAA 3 cut(s) 71, 96, 325
MunI CAATTG 1 cut(s) 201
NlaIV GGNNCC 1 cut(s) 115
NmuCI GTSAC 1 cut(s) 124
PfeI GAWTC 1 cut(s) 232
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
PshBI ATTAAT 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 115
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 2 cut(s) 115, 295
RsaNI GTAC 2 cut(s) 114, 294
SaqAI TTAA 3 cut(s) 71, 96, 325
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 256
SetI ASST 7 cut(s) 30, 55, 115, 119, 141, 193, 288
Sse9I AATT 6 cut(s) 36, 57, 68, 130, 201, 308
SsiI CCGC 1 cut(s) 176
SspMI CTAG 1 cut(s) 162
TaqI TCGA 1 cut(s) 320
TasI AATT 6 cut(s) 36, 57, 68, 130, 201, 308
TfiI GAWTC 1 cut(s) 232
Tru1I TTAA 3 cut(s) 71, 96, 325
Tru9I TTAA 3 cut(s) 71, 96, 325
TseFI GTSAC 1 cut(s) 124
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 1 cut(s) 321
VspI ATTAAT 1 cut(s) 96
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.