RchiOBHm_Chr7g0228491

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
51824411 .. 51827753
3343 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 285 bp
ATGGAGGAAAACCAATCTAAAGCCATCATTCTCATCACAAGGCACATGAATGATGCGCTCCGGAATGAGTACCTCAATGAAGAGGACTCTAGAAAGCTATGGGTAGAACTCGAGCAGCGATTTGGCAACGTTCGTGACTCCCTGCTTCCAGTTCTAGAAGTGAGATGGCATAGCCTTCACTTCTGTGATTTCAAGTCTGTACTTGACTACAATTTAGAAGCCCTTCGTATCAAGTCCTTAATGGAGTTCTGTGAAAAGAACATCACTGATACGATGTTGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

94

Amino Acids

11.3

Weight (kDa)

5.13

Isoelectric Point (pI)

53.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0021474)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 60
AclI AACGTT 1 cut(s) 129
AfaI GTAC 2 cut(s) 71, 201
AgsI TTSAA 1 cut(s) 193
AleI CACNNNNGTG 1 cut(s) 183
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
Ama87I CYCGRG 1 cut(s) 110
Aor13HI TCCGGA 1 cut(s) 60
ApeKI GCWGC 1 cut(s) 115
Asp700I GAANNNNTTC 1 cut(s) 222
AspLEI GCGC 1 cut(s) 58
AvaI CYCGRG 1 cut(s) 110
BbvI GCAGC 1 cut(s) 127
BccI CCATC 2 cut(s) 32, 159
BfaI CTAG 3 cut(s) 90, 155, 283
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
BmeT110I CYCGRG 1 cut(s) 110
BmsI GCATC 1 cut(s) 43
BsaBI GATNNNNATC 1 cut(s) 278
BsaWI WCCGGW 1 cut(s) 60
Bse1I ACTGG 1 cut(s) 149
Bse8I GATNNNNATC 1 cut(s) 278
BseAI TCCGGA 1 cut(s) 60
BseJI GATNNNNATC 1 cut(s) 278
BseNI ACTGG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 127
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 1 cut(s) 61
BsoBI CYCGRG 1 cut(s) 110
Bsp13I TCCGGA 1 cut(s) 60
Bsp143I GATC 1 cut(s) 279
BspEI TCCGGA 1 cut(s) 60
BsrI ACTGG 1 cut(s) 149
BssMI GATC 1 cut(s) 279
Bst6I CTCTTC 1 cut(s) 75
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 1 cut(s) 282
BstMBI GATC 1 cut(s) 279
BstV1I GCAGC 1 cut(s) 127
BtsIMutI CAGTG 1 cut(s) 264
CfoI GCGC 1 cut(s) 58
Csp6I GTAC 2 cut(s) 70, 200
CviAII CATG 1 cut(s) 46
CviJI RGCY 4 cut(s) 23, 97, 174, 221
CviKI_1 RGCY 4 cut(s) 23, 97, 174, 221
CviQI GTAC 2 cut(s) 70, 200
DpnI GATC 1 cut(s) 281
DpnII GATC 1 cut(s) 279
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 110
FaeI CATG 1 cut(s) 49
FaiI YATR 3 cut(s) 47, 100, 171
FatI CATG 1 cut(s) 45
Fnu4HI GCNGC 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 116
FspBI CTAG 3 cut(s) 90, 155, 283
GlaI GCGC 1 cut(s) 57
GluI GCNGC 1 cut(s) 116
HapII CCGG 1 cut(s) 61
HhaI GCGC 1 cut(s) 58
Hin1II CATG 1 cut(s) 49
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HinfI GANTC 2 cut(s) 86, 137
HpaII CCGG 1 cut(s) 61
Hpy188III TCNNGA 4 cut(s) 61, 90, 134, 155
HpyAV CCTTC 2 cut(s) 185, 233
HpyCH4IV ACGT 1 cut(s) 129
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 1 cut(s) 49
HspAI GCGC 1 cut(s) 56
Kpn2I TCCGGA 1 cut(s) 60
Kzo9I GATC 1 cut(s) 279
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 3 cut(s) 74, 155, 162
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 1 cut(s) 43
MaeI CTAG 3 cut(s) 90, 155, 283
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 1 cut(s) 134
MalI GATC 1 cut(s) 281
MboI GATC 1 cut(s) 279
MboII GAAGA 1 cut(s) 92
MluCI AATT 1 cut(s) 211
MlyI GAGTC 2 cut(s) 80, 131
MnlI CCTC 2 cut(s) 76, 83
MroI TCCGGA 1 cut(s) 60
MroXI GAANNNNTTC 1 cut(s) 222
MseI TTAA 1 cut(s) 239
MslI CAYNNNNRTG 2 cut(s) 48, 183
MspI CCGG 1 cut(s) 61
NdeII GATC 1 cut(s) 279
NlaIII CATG 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 134
OliI CACNNNNGTG 1 cut(s) 183
PaeR7I CTCGAG 1 cut(s) 110
PdmI GAANNNNTTC 1 cut(s) 222
PkrI GCNGC 1 cut(s) 117
PleI GAGTC 2 cut(s) 80, 131
PpsI GAGTC 2 cut(s) 80, 131
Psp1406I AACGTT 1 cut(s) 129
PspXI VCTCGAGB 1 cut(s) 110
RsaI GTAC 2 cut(s) 71, 201
RsaNI GTAC 2 cut(s) 70, 200
RseI CAYNNNNRTG 2 cut(s) 48, 183
SaqAI TTAA 1 cut(s) 239
SatI GCNGC 1 cut(s) 116
Sau3AI GATC 1 cut(s) 279
SchI GAGTC 2 cut(s) 80, 131
SetI ASST 3 cut(s) 75, 99, 132
SfaNI GCATC 1 cut(s) 43
Sfr274I CTCGAG 1 cut(s) 110
SlaI CTCGAG 1 cut(s) 110
SmiMI CAYNNNNRTG 2 cut(s) 48, 183
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 1 cut(s) 211
SspMI CTAG 3 cut(s) 90, 155, 283
TaiI ACGT 1 cut(s) 132
TaqI TCGA 1 cut(s) 111
TasI AATT 1 cut(s) 211
TatI WGTACW 1 cut(s) 199
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 1 cut(s) 115
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 2 cut(s) 62, 93
TspRI CASTG 1 cut(s) 271
XbaI TCTAGA 2 cut(s) 89, 154
XhoI CTCGAG 1 cut(s) 110
XmnI GAANNNNTTC 1 cut(s) 222
XspI CTAG 3 cut(s) 90, 155, 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.