Rmu_sc0000971.1_g000015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000971.1
OG0021474
Physical Location & Seq
Reverse (-)
46394 .. 46858
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000971.1_g000015.1.cds

Sequence Viewer

Length: 465 bp
atgcttactcctcaacaagctgctgcttttgaagcaaatagagctagagaggcaaatgaagctaaagccatcattctcatgacaaggcacatgaatgacgcgctccagaatgagtatctcaatagggaagacccaaaaaaactatgggtagaactcgagcagcgttttggcaacgttcgtgactccctgcttccagacttagaagtgagatggcatagcctccacttcagtgattttaagtctgtacttgactacaattcggaagcactttgtatcaagtctttgatggaattctgtgggcagaaaatcactgatacgatgttgatcgagaagactctctctaccttccccgtctctgcattgatggtagccaagaactatcggattgatgtcaatgcaggacgcatcacaagatttcatgagcttatttgtaatgtcccgtatctcaatttacccgtttactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

154

Amino Acids

17.86

Weight (kDa)

6.08

Isoelectric Point (pI)

31.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021474)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0228491
rosa_multiflora Rmu_co8245999.1_g000001 Rmu_sc0000971.1_g000015 Rmu_sc0007655.1_g000005 Rmu_sc0010088.1_g000008

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 101
AclI AACGTT 1 cut(s) 174
AcsI RAATTY 1 cut(s) 290
AcuI CTGAAG 1 cut(s) 211
AfaI GTAC 1 cut(s) 246
AgsI TTSAA 1 cut(s) 32
AleI CACNNNNGTG 1 cut(s) 228
AluBI AGCT 4 cut(s) 20, 44, 62, 424
AluI AGCT 4 cut(s) 20, 44, 62, 424
Alw26I GTCTC 1 cut(s) 358
Ama87I CYCGRG 1 cut(s) 155
ApeKI GCWGC 3 cut(s) 20, 23, 160
ApoI RAATTY 1 cut(s) 290
AspLEI GCGC 1 cut(s) 103
AvaI CYCGRG 1 cut(s) 155
BbsI GAAGAC 2 cut(s) 135, 338
BbvI GCAGC 3 cut(s) 7, 10, 172
BccI CCATC 4 cut(s) 77, 204, 280, 358
BcoDI GTCTC 1 cut(s) 358
BfaI CTAG 2 cut(s) 45, 463
BisI GCNGC 3 cut(s) 21, 24, 161
BlsI GCNGC 3 cut(s) 22, 25, 162
BmeT110I CYCGRG 1 cut(s) 155
BmsI GCATC 1 cut(s) 414
BpiI GAAGAC 2 cut(s) 135, 338
BpmI CTGGAG 1 cut(s) 89
BsaBI GATNNNNATC 1 cut(s) 323
Bse8I GATNNNNATC 1 cut(s) 323
BseJI GATNNNNATC 1 cut(s) 323
BseXI GCAGC 3 cut(s) 7, 10, 172
Bsh1236I CGCG 1 cut(s) 101
BsiHKCI CYCGRG 1 cut(s) 155
BslFI GGGAC 1 cut(s) 422
BsmAI GTCTC 1 cut(s) 358
BsmBI CGTCTC 1 cut(s) 358
BsmFI GGGAC 1 cut(s) 422
BsoBI CYCGRG 1 cut(s) 155
Bsp143I GATC 1 cut(s) 324
BspFNI CGCG 1 cut(s) 101
BspHI TCATGA 2 cut(s) 78, 418
BssMI GATC 1 cut(s) 324
BstDEI CTNAG 1 cut(s) 199
BstFNI CGCG 1 cut(s) 101
BstHHI GCGC 1 cut(s) 103
BstKTI GATC 1 cut(s) 327
BstMAI GTCTC 1 cut(s) 358
BstMBI GATC 1 cut(s) 324
BstMWI GCNNNNNNNGC 4 cut(s) 32, 41, 50, 59
BstUI CGCG 1 cut(s) 101
BstV1I GCAGC 3 cut(s) 7, 10, 172
BstV2I GAAGAC 2 cut(s) 135, 338
BtsIMutI CAGTG 2 cut(s) 235, 309
CciI TCATGA 2 cut(s) 78, 418
CfoI GCGC 1 cut(s) 103
CseI GACGC 2 cut(s) 107, 411
Csp6I GTAC 1 cut(s) 245
CviAII CATG 3 cut(s) 79, 91, 419
CviJI RGCY 7 cut(s) 20, 44, 62, 68, 219, 371, 424
CviKI_1 RGCY 7 cut(s) 20, 44, 62, 68, 219, 371, 424
CviQI GTAC 1 cut(s) 245
DdeI CTNAG 1 cut(s) 199
DpnI GATC 1 cut(s) 326
DpnII GATC 1 cut(s) 324
Eco57I CTGAAG 1 cut(s) 211
Eco88I CYCGRG 1 cut(s) 155
EcoRI GAATTC 1 cut(s) 290
Esp3I CGTCTC 1 cut(s) 358
FaeI CATG 3 cut(s) 82, 94, 422
FaiI YATR 5 cut(s) 80, 92, 145, 216, 420
FaqI GGGAC 1 cut(s) 422
FatI CATG 3 cut(s) 78, 90, 418
Fnu4HI GCNGC 3 cut(s) 21, 24, 161
Fsp4HI GCNGC 3 cut(s) 21, 24, 161
FspBI CTAG 2 cut(s) 45, 463
GlaI GCGC 1 cut(s) 102
GluI GCNGC 3 cut(s) 21, 24, 161
GsuI CTGGAG 1 cut(s) 89
HgaI GACGC 2 cut(s) 107, 411
HhaI GCGC 1 cut(s) 103
Hin1II CATG 3 cut(s) 82, 94, 422
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HinfI GANTC 2 cut(s) 182, 334
Hpy166II GTNNAC 1 cut(s) 460
Hpy188I TCNGA 2 cut(s) 262, 384
Hpy188III TCNNGA 6 cut(s) 79, 106, 179, 194, 328, 419
Hpy8I GTNNAC 1 cut(s) 460
HpyAV CCTTC 1 cut(s) 355
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 2 cut(s) 359, 398
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 41, 50, 59
HpyF3I CTNAG 1 cut(s) 199
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 3 cut(s) 82, 94, 422
HspAI GCGC 1 cut(s) 101
Kzo9I GATC 1 cut(s) 324
LmnI GCTCC 1 cut(s) 108
LpnPI CCDG 4 cut(s) 119, 200, 207, 384
Lsp1109I GCAGC 3 cut(s) 7, 10, 172
LweI GCATC 1 cut(s) 414
MaeI CTAG 2 cut(s) 45, 463
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 1 cut(s) 179
MalI GATC 1 cut(s) 326
MboI GATC 1 cut(s) 324
MboII GAAGA 2 cut(s) 140, 343
MluCI AATT 3 cut(s) 256, 290, 448
MlyI GAGTC 2 cut(s) 176, 328
MnlI CCTC 3 cut(s) 21, 43, 230
MseI TTAA 1 cut(s) 237
MslI CAYNNNNRTG 3 cut(s) 77, 93, 228
MvnI CGCG 1 cut(s) 101
MwoI GCNNNNNNNGC 4 cut(s) 32, 41, 50, 59
NdeII GATC 1 cut(s) 324
NlaIII CATG 3 cut(s) 82, 94, 422
NmuCI GTSAC 1 cut(s) 179
OliI CACNNNNGTG 1 cut(s) 228
PaeR7I CTCGAG 1 cut(s) 155
PagI TCATGA 2 cut(s) 78, 418
PkrI GCNGC 3 cut(s) 22, 25, 162
PleI GAGTC 2 cut(s) 176, 328
PpsI GAGTC 2 cut(s) 176, 328
Psp1406I AACGTT 1 cut(s) 174
PspXI VCTCGAGB 1 cut(s) 155
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
RseI CAYNNNNRTG 3 cut(s) 77, 93, 228
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 3 cut(s) 21, 24, 161
Sau3AI GATC 1 cut(s) 324
SchI GAGTC 2 cut(s) 176, 328
SetI ASST 6 cut(s) 22, 46, 64, 177, 347, 426
SfaNI GCATC 1 cut(s) 414
Sfr274I CTCGAG 1 cut(s) 155
SlaI CTCGAG 1 cut(s) 155
SmiMI CAYNNNNRTG 3 cut(s) 77, 93, 228
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 3 cut(s) 256, 290, 448
SspMI CTAG 2 cut(s) 45, 463
TaiI ACGT 1 cut(s) 177
TaqI TCGA 2 cut(s) 156, 327
TasI AATT 3 cut(s) 256, 290, 448
TatI WGTACW 1 cut(s) 244
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 2 cut(s) 235, 316
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 3 cut(s) 20, 23, 160
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 3 cut(s) 72, 107, 407
TspRI CASTG 2 cut(s) 235, 316
XapI RAATTY 1 cut(s) 290
XcmI CCANNNNNNNNNTGG 1 cut(s) 141
XhoI CTCGAG 1 cut(s) 155
XspI CTAG 2 cut(s) 45, 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.