Rmu_sc0010088.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010088.1
OG0021474
Physical Location & Seq
Reverse (-)
12069 .. 12575
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010088.1_g000008.1.cds

Sequence Viewer

Length: 507 bp
ctgagtacgatccaagagccaagtcaggacgtgcttactcctcaacaagctgctgcttttgaagcaaatagagctagagaggcaaatgaagctaaagccatcattctcatgacaaggcacatgaatgacgcgctccagaatgagtatctcaatggggaagacccaaaaaaactatgggtagaactcgagcagcgtttgggcaacgttcgtgactccctgcttccagacttagaagtgagatggcatagcctccccttctgtgattttaagtctgtacttgactacaattcggaagcactttgtatcaagtattgtatcaagtctttgatggaattctgtgggcagaaaatcactgatacgatgttgaccgagaagactctctctaccttccccgtctctgcattgatggtagccaagaactatcggattgatgtcaatgcaggatgcatcacaagatttcatgagcttatttgtaacgtcccgtatctcaatttacccgtttactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

168

Amino Acids

19.22

Weight (kDa)

5.22

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021474)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0228491
rosa_multiflora Rmu_co8245999.1_g000001 Rmu_sc0000971.1_g000015 Rmu_sc0007655.1_g000005 Rmu_sc0010088.1_g000008

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 131
AclI AACGTT 1 cut(s) 204
AclWI GGATC 1 cut(s) 4
AcsI RAATTY 1 cut(s) 332
AfaI GTAC 2 cut(s) 7, 276
AgsI TTSAA 1 cut(s) 62
AjiI CACGTC 1 cut(s) 31
AluBI AGCT 4 cut(s) 50, 74, 92, 466
AluI AGCT 4 cut(s) 50, 74, 92, 466
Alw26I GTCTC 1 cut(s) 400
AlwI GGATC 1 cut(s) 4
Ama87I CYCGRG 1 cut(s) 185
ApeKI GCWGC 3 cut(s) 50, 53, 190
ApoI RAATTY 1 cut(s) 332
AspLEI GCGC 1 cut(s) 133
AvaI CYCGRG 1 cut(s) 185
BbsI GAAGAC 2 cut(s) 165, 380
BbvI GCAGC 3 cut(s) 37, 40, 202
BccI CCATC 4 cut(s) 107, 234, 322, 400
BcoDI GTCTC 1 cut(s) 400
BfaI CTAG 2 cut(s) 75, 505
BisI GCNGC 3 cut(s) 51, 54, 191
BlsI GCNGC 3 cut(s) 52, 55, 192
BmeT110I CYCGRG 1 cut(s) 185
BmgBI CACGTC 1 cut(s) 31
BmsI GCATC 2 cut(s) 434, 456
BpiI GAAGAC 2 cut(s) 165, 380
BpmI CTGGAG 1 cut(s) 119
BseGI GGATG 1 cut(s) 449
BseRI GAGGAG 1 cut(s) 30
BseXI GCAGC 3 cut(s) 37, 40, 202
Bsh1236I CGCG 1 cut(s) 131
BsiHKCI CYCGRG 1 cut(s) 185
BslFI GGGAC 1 cut(s) 464
BsmAI GTCTC 1 cut(s) 400
BsmBI CGTCTC 1 cut(s) 400
BsmFI GGGAC 1 cut(s) 464
BsoBI CYCGRG 1 cut(s) 185
Bsp143I GATC 1 cut(s) 9
BspFNI CGCG 1 cut(s) 131
BspHI TCATGA 2 cut(s) 108, 460
BspPI GGATC 1 cut(s) 4
BssMI GATC 1 cut(s) 9
BstDEI CTNAG 2 cut(s) 2, 229
BstF5I GGATG 1 cut(s) 449
BstFNI CGCG 1 cut(s) 131
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 1 cut(s) 12
BstMAI GTCTC 1 cut(s) 400
BstMBI GATC 1 cut(s) 9
BstMWI GCNNNNNNNGC 4 cut(s) 62, 71, 80, 89
BstUI CGCG 1 cut(s) 131
BstV1I GCAGC 3 cut(s) 37, 40, 202
BstV2I GAAGAC 2 cut(s) 165, 380
BtrI CACGTC 1 cut(s) 31
BtsCI GGATG 1 cut(s) 449
BtsIMutI CAGTG 1 cut(s) 351
CciI TCATGA 2 cut(s) 108, 460
CfoI GCGC 1 cut(s) 133
CseI GACGC 1 cut(s) 137
Csp6I GTAC 2 cut(s) 6, 275
CviAII CATG 3 cut(s) 109, 121, 461
CviJI RGCY 8 cut(s) 19, 50, 74, 92, 98, 249, 413, 466
CviKI_1 RGCY 8 cut(s) 19, 50, 74, 92, 98, 249, 413, 466
CviQI GTAC 2 cut(s) 6, 275
DdeI CTNAG 2 cut(s) 2, 229
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
Eco88I CYCGRG 1 cut(s) 185
EcoRI GAATTC 1 cut(s) 332
EcoT22I ATGCAT 1 cut(s) 449
Esp3I CGTCTC 1 cut(s) 400
FaeI CATG 3 cut(s) 112, 124, 464
FaiI YATR 5 cut(s) 110, 122, 175, 246, 462
FaqI GGGAC 1 cut(s) 464
FatI CATG 3 cut(s) 108, 120, 460
Fnu4HI GCNGC 3 cut(s) 51, 54, 191
FokI GGATG 1 cut(s) 456
Fsp4HI GCNGC 3 cut(s) 51, 54, 191
FspBI CTAG 2 cut(s) 75, 505
GlaI GCGC 1 cut(s) 132
GluI GCNGC 3 cut(s) 51, 54, 191
GsuI CTGGAG 1 cut(s) 119
HgaI GACGC 1 cut(s) 137
HhaI GCGC 1 cut(s) 133
Hin1II CATG 3 cut(s) 112, 124, 464
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HincII GTYRAC 1 cut(s) 366
HindII GTYRAC 1 cut(s) 366
HinfI GANTC 2 cut(s) 212, 376
Hpy166II GTNNAC 2 cut(s) 366, 502
Hpy188I TCNGA 2 cut(s) 292, 426
Hpy188III TCNNGA 6 cut(s) 26, 109, 136, 209, 224, 461
Hpy8I GTNNAC 2 cut(s) 366, 502
HpyAV CCTTC 2 cut(s) 265, 397
HpyCH4IV ACGT 3 cut(s) 30, 204, 477
HpyCH4V TGCA 3 cut(s) 401, 440, 447
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 71, 80, 89
HpyF3I CTNAG 2 cut(s) 2, 229
HpySE526I ACGT 3 cut(s) 30, 204, 477
Hsp92II CATG 3 cut(s) 112, 124, 464
HspAI GCGC 1 cut(s) 131
Kzo9I GATC 1 cut(s) 9
LmnI GCTCC 1 cut(s) 138
LpnPI CCDG 5 cut(s) 11, 149, 230, 237, 426
Lsp1109I GCAGC 3 cut(s) 37, 40, 202
LweI GCATC 2 cut(s) 434, 456
MaeI CTAG 2 cut(s) 75, 505
MaeII ACGT 3 cut(s) 30, 204, 477
MaeIII GTNAC 2 cut(s) 209, 473
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 2 cut(s) 170, 385
MluCI AATT 3 cut(s) 286, 332, 490
MlyI GAGTC 2 cut(s) 206, 370
MnlI CCTC 3 cut(s) 51, 73, 260
Mph1103I ATGCAT 1 cut(s) 449
MseI TTAA 1 cut(s) 267
MslI CAYNNNNRTG 2 cut(s) 107, 123
MvnI CGCG 1 cut(s) 131
MwoI GCNNNNNNNGC 4 cut(s) 62, 71, 80, 89
NdeII GATC 1 cut(s) 9
NlaIII CATG 3 cut(s) 112, 124, 464
NmuCI GTSAC 1 cut(s) 209
NsiI ATGCAT 1 cut(s) 449
PaeR7I CTCGAG 1 cut(s) 185
PagI TCATGA 2 cut(s) 108, 460
PkrI GCNGC 3 cut(s) 52, 55, 192
PleI GAGTC 2 cut(s) 206, 370
PpsI GAGTC 2 cut(s) 206, 370
Psp1406I AACGTT 1 cut(s) 204
PspXI VCTCGAGB 1 cut(s) 185
RsaI GTAC 2 cut(s) 7, 276
RsaNI GTAC 2 cut(s) 6, 275
RseI CAYNNNNRTG 2 cut(s) 107, 123
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 3 cut(s) 51, 54, 191
Sau3AI GATC 1 cut(s) 9
SchI GAGTC 2 cut(s) 206, 370
SetI ASST 8 cut(s) 33, 52, 76, 94, 207, 389, 468, 480
SfaNI GCATC 2 cut(s) 434, 456
Sfr274I CTCGAG 1 cut(s) 185
SlaI CTCGAG 1 cut(s) 185
SmiMI CAYNNNNRTG 2 cut(s) 107, 123
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 3 cut(s) 286, 332, 490
SspMI CTAG 2 cut(s) 75, 505
TaiI ACGT 3 cut(s) 33, 207, 480
TaqI TCGA 1 cut(s) 186
TaqII GACCGA 1 cut(s) 383
TasI AATT 3 cut(s) 286, 332, 490
TatI WGTACW 1 cut(s) 274
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 1 cut(s) 358
TseFI GTSAC 1 cut(s) 209
TseI GCWGC 3 cut(s) 50, 53, 190
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 3 cut(s) 102, 137, 449
TspRI CASTG 1 cut(s) 358
XapI RAATTY 1 cut(s) 332
XcmI CCANNNNNNNNNTGG 1 cut(s) 171
XhoI CTCGAG 1 cut(s) 185
XspI CTAG 2 cut(s) 75, 505
Zsp2I ATGCAT 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.