Rmu_co8245999.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8245999.1
OG0021474
Physical Location & Seq
Forward (+)
368 .. 781
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8245999.1_g000001.1.cds

Sequence Viewer

Length: 414 bp
atgagagaggctaatgaagcaaaagccattattctcatgacaagacacatgaatgacgcgctccaaaatgagtacctcaatgaggaagacccaagaaagctatgggtggaactcgagcagcgttttggtaacgtttgtgactccctgcttccagacttagaagtgagatggcatagcctccgcttctgtgatttcaagtctgtactagactacaattcagaagcacttcgtatcaagtctttgatgaaattctgtgggcagaaaatcattgatacgatgttgatcgagaagactctctccaccttccccttctatgcattgatgatagccaagaactatcagattgatgtcaatgctagaagcatcacaagatttcatgagctaattggtgccatgaacgtagctgaaaagcac
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

138

Amino Acids

16.24

Weight (kDa)

6.08

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021474)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0228491
rosa_multiflora Rmu_co8245999.1_g000001 Rmu_sc0000971.1_g000015 Rmu_sc0007655.1_g000005 Rmu_sc0010088.1_g000008

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 389
AccII CGCG 1 cut(s) 59
AciI CCGC 1 cut(s) 181
AclI AACGTT 1 cut(s) 132
AcsI RAATTY 1 cut(s) 248
AfaI GTAC 2 cut(s) 74, 204
AfiI CCNNNNNNNGG 1 cut(s) 82
AgsI TTSAA 1 cut(s) 196
AluBI AGCT 3 cut(s) 100, 382, 404
AluI AGCT 3 cut(s) 100, 382, 404
Ama87I CYCGRG 1 cut(s) 113
ApeKI GCWGC 1 cut(s) 118
ApoI RAATTY 1 cut(s) 248
Asp700I GAANNNNTTC 1 cut(s) 225
AspLEI GCGC 1 cut(s) 61
AvaI CYCGRG 1 cut(s) 113
BanI GGYRCC 1 cut(s) 389
BbsI GAAGAC 2 cut(s) 93, 296
BbvI GCAGC 1 cut(s) 130
BccI CCATC 1 cut(s) 162
BfaI CTAG 2 cut(s) 206, 357
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
BmeT110I CYCGRG 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 391
BmsI GCATC 1 cut(s) 372
BpiI GAAGAC 2 cut(s) 93, 296
BsaBI GATNNNNATC 1 cut(s) 281
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse8I GATNNNNATC 1 cut(s) 281
BseJI GATNNNNATC 1 cut(s) 281
BseLI CCNNNNNNNGG 1 cut(s) 82
BseXI GCAGC 1 cut(s) 130
Bsh1236I CGCG 1 cut(s) 59
BshNI GGYRCC 1 cut(s) 389
BsiHKCI CYCGRG 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 82
BsoBI CYCGRG 1 cut(s) 113
Bsp143I GATC 1 cut(s) 282
BspACI CCGC 1 cut(s) 181
BspFNI CGCG 1 cut(s) 59
BspHI TCATGA 2 cut(s) 36, 376
BspLI GGNNCC 1 cut(s) 391
BspT107I GGYRCC 1 cut(s) 389
BssMI GATC 1 cut(s) 282
BstDEI CTNAG 1 cut(s) 157
BstENI CCTNNNNNAGG 1 cut(s) 80
BstFNI CGCG 1 cut(s) 59
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 1 cut(s) 285
BstMBI GATC 1 cut(s) 282
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstUI CGCG 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 130
BstV2I GAAGAC 2 cut(s) 93, 296
CciI TCATGA 2 cut(s) 36, 376
CfoI GCGC 1 cut(s) 61
CseI GACGC 1 cut(s) 65
Csp6I GTAC 2 cut(s) 73, 203
CviAII CATG 4 cut(s) 37, 49, 377, 394
CviJI RGCY 7 cut(s) 11, 26, 100, 177, 329, 382, 404
CviKI_1 RGCY 7 cut(s) 11, 26, 100, 177, 329, 382, 404
CviQI GTAC 2 cut(s) 73, 203
DdeI CTNAG 1 cut(s) 157
DpnI GATC 1 cut(s) 284
DpnII GATC 1 cut(s) 282
Eco88I CYCGRG 1 cut(s) 113
EcoNI CCTNNNNNAGG 1 cut(s) 80
EcoT22I ATGCAT 1 cut(s) 319
FaeI CATG 4 cut(s) 40, 52, 380, 397
FaiI YATR 7 cut(s) 38, 50, 103, 174, 315, 378, 395
FatI CATG 4 cut(s) 36, 48, 376, 393
Fnu4HI GCNGC 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 119
FspBI CTAG 2 cut(s) 206, 357
GlaI GCGC 1 cut(s) 60
GluI GCNGC 1 cut(s) 119
HgaI GACGC 1 cut(s) 65
HhaI GCGC 1 cut(s) 61
Hin1II CATG 4 cut(s) 40, 52, 380, 397
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HinfI GANTC 2 cut(s) 140, 292
Hpy188I TCNGA 2 cut(s) 220, 342
Hpy188III TCNNGA 4 cut(s) 37, 152, 286, 377
HpyAV CCTTC 2 cut(s) 313, 319
HpyCH4IV ACGT 2 cut(s) 132, 399
HpyCH4V TGCA 1 cut(s) 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 1 cut(s) 157
HpySE526I ACGT 2 cut(s) 132, 399
Hsp92II CATG 4 cut(s) 40, 52, 380, 397
HspAI GCGC 1 cut(s) 59
Kzo9I GATC 1 cut(s) 282
LmnI GCTCC 1 cut(s) 66
LpnPI CCDG 2 cut(s) 158, 165
Lsp1109I GCAGC 1 cut(s) 130
LweI GCATC 1 cut(s) 372
MaeI CTAG 2 cut(s) 206, 357
MaeII ACGT 2 cut(s) 132, 399
MaeIII GTNAC 2 cut(s) 128, 137
MalI GATC 1 cut(s) 284
MboI GATC 1 cut(s) 282
MboII GAAGA 2 cut(s) 98, 301
MluCI AATT 3 cut(s) 214, 248, 384
MlyI GAGTC 2 cut(s) 134, 286
MnlI CCTC 3 cut(s) 76, 86, 188
Mph1103I ATGCAT 1 cut(s) 319
MroXI GAANNNNTTC 1 cut(s) 225
MslI CAYNNNNRTG 1 cut(s) 51
MvnI CGCG 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 17
NdeII GATC 1 cut(s) 282
NlaIII CATG 4 cut(s) 40, 52, 380, 397
NlaIV GGNNCC 1 cut(s) 391
NmuCI GTSAC 1 cut(s) 137
NsiI ATGCAT 1 cut(s) 319
PaeR7I CTCGAG 1 cut(s) 113
PagI TCATGA 2 cut(s) 36, 376
PdmI GAANNNNTTC 1 cut(s) 225
PkrI GCNGC 1 cut(s) 120
PleI GAGTC 2 cut(s) 134, 286
PpsI GAGTC 2 cut(s) 134, 286
Psp1406I AACGTT 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 391
PspXI VCTCGAGB 1 cut(s) 113
RsaI GTAC 2 cut(s) 74, 204
RsaNI GTAC 2 cut(s) 73, 203
RseI CAYNNNNRTG 1 cut(s) 51
SatI GCNGC 1 cut(s) 119
Sau3AI GATC 1 cut(s) 282
SchI GAGTC 2 cut(s) 134, 286
SetI ASST 7 cut(s) 78, 102, 135, 305, 384, 402, 406
SfaNI GCATC 1 cut(s) 372
Sfr274I CTCGAG 1 cut(s) 113
SlaI CTCGAG 1 cut(s) 113
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 3 cut(s) 214, 248, 384
SsiI CCGC 1 cut(s) 181
SspMI CTAG 2 cut(s) 206, 357
TaiI ACGT 2 cut(s) 135, 402
TaqI TCGA 2 cut(s) 114, 285
TasI AATT 3 cut(s) 214, 248, 384
TatI WGTACW 1 cut(s) 202
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 5 cut(s) 30, 65, 260, 365, 410
XagI CCTNNNNNAGG 1 cut(s) 80
XapI RAATTY 1 cut(s) 248
XcmI CCANNNNNNNNNTGG 1 cut(s) 99
XhoI CTCGAG 1 cut(s) 113
XmnI GAANNNNTTC 1 cut(s) 225
XspI CTAG 2 cut(s) 206, 357
Zsp2I ATGCAT 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.