Rmu_sc0007655.1_g000005

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007655.1
Physical Location & Seq
Forward (+)
19202 .. 19540
339 bp
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UTR
Exon/CDS
Intron
Rmu_sc0007655.1_g000005.1.cds

Sequence Viewer

Length: 339 bp
atggaggcaaatcaagctaaagccataattctcatgacaaggcacatgaatgacgtgctccagaatgagtacctcaatgaaaatgaccctagaaagctatgggtagaactcgagcagcgatttggcaacgtttgtgactctctgcttcttgatttagaagtgagatggcataacctccacttctgtgattttaagtccgtacttgactacaattcggaagcacttcatatcaagtctttgatggagttctgtagcaagaacataactgatacgatgttgattgagaagtccctctctaccttccctgtctctgcactgatgatttccaagaattattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

112

Amino Acids

13.16

Weight (kDa)

5.25

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021474)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 129
AfaI GTAC 2 cut(s) 71, 201
AjiI CACGTC 1 cut(s) 55
AleI CACNNNNGTG 1 cut(s) 183
AluBI AGCT 2 cut(s) 17, 97
AluI AGCT 2 cut(s) 17, 97
Alw21I GWGCWC 1 cut(s) 60
Alw26I GTCTC 1 cut(s) 313
Ama87I CYCGRG 1 cut(s) 110
ApeKI GCWGC 1 cut(s) 115
Asp700I GAANNNNTTC 1 cut(s) 222
AvaI CYCGRG 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 127
BccI CCATC 2 cut(s) 159, 235
BcoDI GTCTC 1 cut(s) 313
BfaI CTAG 1 cut(s) 90
BfmI CTRYAG 1 cut(s) 250
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
BmeT110I CYCGRG 1 cut(s) 110
BmgBI CACGTC 1 cut(s) 55
BpmI CTGGAG 1 cut(s) 44
BseXI GCAGC 1 cut(s) 127
BsgI GTGCAG 1 cut(s) 297
BsiHKAI GWGCWC 1 cut(s) 60
BsiHKCI CYCGRG 1 cut(s) 110
BslFI GGGAC 1 cut(s) 274
BsmAI GTCTC 1 cut(s) 313
BsmFI GGGAC 1 cut(s) 274
BsoBI CYCGRG 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 60
BspHI TCATGA 1 cut(s) 33
BstMAI GTCTC 1 cut(s) 313
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstSFI CTRYAG 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 127
BtrI CACGTC 1 cut(s) 55
BtsIMutI CAGTG 1 cut(s) 314
CciI TCATGA 1 cut(s) 33
Csp6I GTAC 2 cut(s) 70, 200
CviAII CATG 2 cut(s) 34, 46
CviJI RGCY 3 cut(s) 17, 23, 97
CviKI_1 RGCY 3 cut(s) 17, 23, 97
CviQI GTAC 2 cut(s) 70, 200
Eco88I CYCGRG 1 cut(s) 110
FaeI CATG 2 cut(s) 37, 49
FaiI YATR 7 cut(s) 26, 35, 47, 100, 171, 228, 263
FaqI GGGAC 1 cut(s) 274
FatI CATG 2 cut(s) 33, 45
Fnu4HI GCNGC 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 116
FspBI CTAG 1 cut(s) 90
GluI GCNGC 1 cut(s) 116
GsuI CTGGAG 1 cut(s) 44
Hin1II CATG 2 cut(s) 37, 49
HinfI GANTC 1 cut(s) 137
Hpy188I TCNGA 1 cut(s) 217
Hpy188III TCNNGA 3 cut(s) 34, 61, 149
HpyAV CCTTC 1 cut(s) 310
HpyCH4IV ACGT 2 cut(s) 54, 129
HpyCH4V TGCA 1 cut(s) 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpySE526I ACGT 2 cut(s) 54, 129
Hsp92II CATG 2 cut(s) 37, 49
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 2 cut(s) 74, 318
Lsp1109I GCAGC 1 cut(s) 127
MaeI CTAG 1 cut(s) 90
MaeII ACGT 2 cut(s) 54, 129
MaeIII GTNAC 1 cut(s) 134
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 3 cut(s) 27, 211, 331
MlyI GAGTC 1 cut(s) 131
MnlI CCTC 3 cut(s) 83, 185, 302
MroXI GAANNNNTTC 1 cut(s) 222
MseI TTAA 1 cut(s) 192
MslI CAYNNNNRTG 2 cut(s) 48, 183
MwoI GCNNNNNNNGC 1 cut(s) 14
NlaIII CATG 2 cut(s) 37, 49
NmuCI GTSAC 1 cut(s) 134
OliI CACNNNNGTG 1 cut(s) 183
PaeR7I CTCGAG 1 cut(s) 110
PagI TCATGA 1 cut(s) 33
PdmI GAANNNNTTC 1 cut(s) 222
PkrI GCNGC 1 cut(s) 117
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
Psp1406I AACGTT 1 cut(s) 129
PspXI VCTCGAGB 1 cut(s) 110
RsaI GTAC 2 cut(s) 71, 201
RsaNI GTAC 2 cut(s) 70, 200
RseI CAYNNNNRTG 2 cut(s) 48, 183
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 1 cut(s) 116
SchI GAGTC 1 cut(s) 131
SduI GDGCHC 1 cut(s) 60
SetI ASST 7 cut(s) 19, 57, 75, 99, 132, 177, 302
SfcI CTRYAG 1 cut(s) 250
Sfr274I CTCGAG 1 cut(s) 110
SlaI CTCGAG 1 cut(s) 110
SmiMI CAYNNNNRTG 2 cut(s) 48, 183
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 3 cut(s) 27, 211, 331
SspMI CTAG 1 cut(s) 90
TaiI ACGT 2 cut(s) 57, 132
TaqI TCGA 1 cut(s) 111
TasI AATT 3 cut(s) 27, 211, 331
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 1 cut(s) 321
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 1 cut(s) 115
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 3 cut(s) 62, 93, 215
TspGWI ACGGA 1 cut(s) 187
TspRI CASTG 1 cut(s) 321
XhoI CTCGAG 1 cut(s) 110
XmnI GAANNNNTTC 1 cut(s) 222
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.