RchiOBHm_Chr7g0228791

ATP synthase subunit beta

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
52136145 .. 52136333
189 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 189 bp
ATGAGTGCTACAGATGGTCTAGCGAGAGGAATGGAAGTGATTGACACAGGAGCTCCTTTAAGTGTTCCAGTCGGCGGAGCGACTCTAGGACTAATTTTTAACTTACTTGGAGAGCCTGTGGATAATTTAGGTCCTGTAGATACTCGTACAATATCTCCTATTCATAGATATGCGCCTGCCTTTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

62

Amino Acids

6.38

Weight (kDa)

4.52

Isoelectric Point (pI)

37.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021210)

Species Orthologous Gene IDs
malus_domestica MD11G1295100.v1.1
rosa_chinensis RchiOBHm_Chr7g0228781 RchiOBHm_Chr7g0228791
rosa_roxburghii Rroxscaffold_4G00299650
rosa_samantha Rh7DG399500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 75
AfaI GTAC 1 cut(s) 148
AfiI CCNNNNNNNGG 1 cut(s) 74
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw21I GWGCWC 1 cut(s) 55
AspLEI GCGC 1 cut(s) 175
AspS9I GGNCC 1 cut(s) 131
AvaII GGWCC 1 cut(s) 131
BanII GRGCYC 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 55
BccI CCATC 1 cut(s) 8
BfaI CTAG 3 cut(s) 20, 86, 187
BfmI CTRYAG 2 cut(s) 9, 135
Bme18I GGWCC 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 131
BsaXI ACNNNNNCTCC 6 cut(s) 37, 67, 102, 132, 139, 169
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse1I ACTGG 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 74
BseNI ACTGG 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 55
BslI CCNNNNNNNGG 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 55
BspACI CCGC 1 cut(s) 75
BsrI ACTGG 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 177
BstHHI GCGC 1 cut(s) 175
BstSFI CTRYAG 2 cut(s) 9, 135
Cac8I GCNNGC 1 cut(s) 177
CfoI GCGC 1 cut(s) 175
Cfr13I GGNCC 1 cut(s) 131
Csp6I GTAC 1 cut(s) 147
CviJI RGCY 2 cut(s) 53, 115
CviKI_1 RGCY 2 cut(s) 53, 115
CviQI GTAC 1 cut(s) 147
EciI GGCGGA 1 cut(s) 90
Ecl136II GAGCTC 1 cut(s) 53
Eco24I GRGCYC 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 131
Eco53kI GAGCTC 1 cut(s) 53
EcoICRI GAGCTC 1 cut(s) 53
EcoO109I RGGNCCY 1 cut(s) 131
EcoT38I GRGCYC 1 cut(s) 55
FaiI YATR 2 cut(s) 165, 171
FriOI GRGCYC 1 cut(s) 55
FspBI CTAG 3 cut(s) 20, 86, 187
GlaI GCGC 1 cut(s) 174
HhaI GCGC 1 cut(s) 175
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HinfI GANTC 1 cut(s) 82
HspAI GCGC 1 cut(s) 173
LmnI GCTCC 3 cut(s) 50, 58, 77
LpnPI CCDG 4 cut(s) 33, 81, 129, 147
MaeI CTAG 3 cut(s) 20, 86, 187
MhlI GDGCHC 1 cut(s) 55
MluCI AATT 2 cut(s) 93, 124
MlyI GAGTC 1 cut(s) 76
MnlI CCTC 1 cut(s) 20
MseI TTAA 2 cut(s) 59, 99
MslI CAYNNNNRTG 1 cut(s) 168
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
PpuMI RGGWCCY 1 cut(s) 131
Psp124BI GAGCTC 1 cut(s) 55
Psp5II RGGWCCY 1 cut(s) 131
PspPI GGNCC 1 cut(s) 131
PspPPI RGGWCCY 1 cut(s) 131
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
RseI CAYNNNNRTG 1 cut(s) 168
SacI GAGCTC 1 cut(s) 55
SaqAI TTAA 2 cut(s) 59, 99
Sau96I GGNCC 1 cut(s) 131
SchI GAGTC 1 cut(s) 76
SduI GDGCHC 1 cut(s) 55
SetI ASST 2 cut(s) 55, 133
SfcI CTRYAG 2 cut(s) 9, 135
SgeI CNNG 9 cut(s) 32, 36, 60, 80, 98, 119, 128, 146, 156
SinI GGWCC 1 cut(s) 131
SmiMI CAYNNNNRTG 1 cut(s) 168
Sse9I AATT 2 cut(s) 93, 124
SsiI CCGC 1 cut(s) 75
SspMI CTAG 3 cut(s) 20, 86, 187
SstI GAGCTC 1 cut(s) 55
TasI AATT 2 cut(s) 93, 124
Tru1I TTAA 2 cut(s) 59, 99
Tru9I TTAA 2 cut(s) 59, 99
TspDTI ATGAA 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 131
XspI CTAG 3 cut(s) 20, 86, 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.