Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021210

Physical Location & Seq

Genomic Coordinates Forward (+)

52135911 .. 52136117

Gene Structure 207 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20494

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGAGAATAAATCCTAGTACTTCTGGTCCTGGGGTTTCCGCACTTGAAAAAAAAAACTTGGGGCGTATTGCTCAAATCATTGGTCCGGTACTGGATATAGCTTTTCCACCCGGCAAGATGCCTAATATTTACAACGCTCTGGTAGTTAAGAGTCTAGATACCGCTGGTCAACAAATTAATGTGACTTGTGAAGTACAGCAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008270 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009544 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009814 GO:0009817 GO:0010287 GO:0010319 GO:0016020 GO:0030312 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046872 GO:0046914 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071944 GO:0098542 GO:0098796 GO:0098807

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

ATP-synt_DE ATP-synt_DE_N ATP-synt_ab ATP-synt_ab_N

Protein Analysis

68

Amino Acids

7.22

Weight (kDa)

9.03

Isoelectric Point (pI)

37.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_ab_N	PF02874	23 - 66	2.6e-07	ATP synthase alpha/beta family, beta-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0021210)

Species	Orthologous Gene IDs
malus_domestica	MD11G1295100.v1.1
rosa_chinensis	RchiOBHm_Chr7g0228781 RchiOBHm_Chr7g0228791
rosa_roxburghii	Rroxscaffold_4G00299650
rosa_samantha	Rh7DG399500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	205
AciI	CCGC	2 cut(s)	39, 162
AfaI	GTAC	3 cut(s)	19, 90, 195
AgsI	TTSAA	1 cut(s)	47
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
ArsI	GACNNNNNNTTYG	2 cut(s)	67, 99
AseI	ATTAAT	1 cut(s)	177
AspS9I	GGNCC	2 cut(s)	26, 83
AsuC2I	CCSGG	1 cut(s)	111
AvaII	GGWCC	2 cut(s)	26, 83
BciT130I	CCWGG	1 cut(s)	30
BcnI	CCSGG	1 cut(s)	111
BfaI	CTAG	2 cut(s)	15, 155
BmcAI	AGTACT	1 cut(s)	19
Bme1390I	CCNGG	2 cut(s)	30, 111
Bme18I	GGWCC	2 cut(s)	26, 83
BmgT120I	GGNCC	2 cut(s)	26, 83
BmrFI	CCNGG	2 cut(s)	30, 111
BmsI	GCATC	1 cut(s)	108
BpuMI	CCSGG	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	29
BsaWI	WCCGGW	1 cut(s)	85
Bse1I	ACTGG	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	29
BseNI	ACTGG	1 cut(s)	96
BsiSI	CCGG	2 cut(s)	86, 111
BspACI	CCGC	2 cut(s)	39, 162
BsrI	ACTGG	1 cut(s)	96
BssECI	CCNNGG	1 cut(s)	29
Bst2UI	CCWGG	1 cut(s)	30
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	2 cut(s)	28, 109
Cfr13I	GGNCC	2 cut(s)	26, 83
Csp6I	GTAC	3 cut(s)	18, 89, 194
CviJI	RGCY	1 cut(s)	101
CviKI_1	RGCY	1 cut(s)	101
CviQI	GTAC	3 cut(s)	18, 89, 194
Eco47I	GGWCC	2 cut(s)	26, 83
EcoRII	CCWGG	1 cut(s)	28
FaiI	YATR	2 cut(s)	98, 205
FspBI	CTAG	2 cut(s)	15, 155
HapII	CCGG	2 cut(s)	86, 111
HincII	GTYRAC	1 cut(s)	170
HindII	GTYRAC	1 cut(s)	170
HinfI	GANTC	1 cut(s)	151
HpaII	CCGG	2 cut(s)	86, 111
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	1 cut(s)	170
LpnPI	CCDG	8 cut(s)	9, 15, 42, 77, 99, 124, 125, 150
LweI	GCATC	1 cut(s)	108
MaeI	CTAG	2 cut(s)	15, 155
MaeIII	GTNAC	1 cut(s)	181
MluCI	AATT	2 cut(s)	174, 200
MlyI	GAGTC	1 cut(s)	160
MseI	TTAA	2 cut(s)	147, 177
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	2 cut(s)	86, 111
MspR9I	CCNGG	2 cut(s)	30, 111
MvaI	CCWGG	1 cut(s)	30
NciI	CCSGG	1 cut(s)	111
NmuCI	GTSAC	1 cut(s)	181
PleI	GAGTC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	159
PshBI	ATTAAT	1 cut(s)	177
PsiI	TTATAA	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PspPI	GGNCC	2 cut(s)	26, 83
RsaI	GTAC	3 cut(s)	19, 90, 195
RsaNI	GTAC	3 cut(s)	18, 89, 194
SaqAI	TTAA	2 cut(s)	147, 177
Sau96I	GGNCC	2 cut(s)	26, 83
ScaI	AGTACT	1 cut(s)	19
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	2 cut(s)	30, 111
SetI	ASST	1 cut(s)	103
SfaNI	GCATC	1 cut(s)	108
SinI	GGWCC	2 cut(s)	26, 83
Sse9I	AATT	2 cut(s)	174, 200
SsiI	CCGC	2 cut(s)	39, 162
SspI	AATATT	1 cut(s)	127
SspMI	CTAG	2 cut(s)	15, 155
StyD4I	CCNGG	2 cut(s)	28, 109
TasI	AATT	2 cut(s)	174, 200
TatI	WGTACW	2 cut(s)	17, 193
Tru1I	TTAA	2 cut(s)	147, 177
Tru9I	TTAA	2 cut(s)	147, 177
TseFI	GTSAC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	181
VpaK11BI	GGWCC	2 cut(s)	26, 83
VspI	ATTAAT	1 cut(s)	177
XbaI	TCTAGA	1 cut(s)	154
XspI	CTAG	2 cut(s)	15, 155
ZrmI	AGTACT	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.