Rh7DG399500

ATP synthase subunit beta

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Forward (+)
54885645 .. 54885965
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG399500.1

Sequence Viewer

Length: 321 bp
ATGAGTGCTACATATGGTCTAGCTAGAGGAATAGAAGTGATTGACACAGGAGCTCCTTTAAGTGTTCTAGTCGGCGGAGCGACTCTAGGACTAATTTTTAACTTACTTGGAGAGCCTGTGGATAATTTAGGTCCTGTAGATACTCGTACAACATCTCCTATTCATAGATATGCGCCTGCCTTTATCAAGTTAGATACAAAACTATCCATTTTTGAAACAGGAATTAAAGTTGTAGATCATCTAGCCCCTTATCAACGTGGAGGAAAAATCAGACTTTTTGGGGGAGCTGGAATGGTAAAACAGTACTCATTATGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

106

Amino Acids

11.33

Weight (kDa)

9.1

Isoelectric Point (pI)

22.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0021210)

Species Orthologous Gene IDs
malus_domestica MD11G1295100.v1.1
rosa_chinensis RchiOBHm_Chr7g0228781 RchiOBHm_Chr7g0228791
rosa_roxburghii Rroxscaffold_4G00299650
rosa_samantha Rh7DG399500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 75
AfaI GTAC 2 cut(s) 148, 305
AgsI TTSAA 1 cut(s) 215
AluBI AGCT 3 cut(s) 23, 53, 287
AluI AGCT 3 cut(s) 23, 53, 287
Alw21I GWGCWC 1 cut(s) 55
AspLEI GCGC 1 cut(s) 175
AspS9I GGNCC 1 cut(s) 131
AvaII GGWCC 1 cut(s) 131
BanII GRGCYC 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 55
BfaI CTAG 5 cut(s) 20, 24, 68, 86, 242
BfmI CTRYAG 1 cut(s) 135
BmcAI AGTACT 1 cut(s) 305
Bme18I GGWCC 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 131
BsaXI ACNNNNNCTCC 6 cut(s) 37, 67, 102, 132, 139, 169
BsiHKAI GWGCWC 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 55
Bsp143I GATC 1 cut(s) 235
BspACI CCGC 1 cut(s) 75
BssMI GATC 1 cut(s) 235
Bst4CI ACNGT 1 cut(s) 303
BstC8I GCNNGC 1 cut(s) 177
BstHHI GCGC 1 cut(s) 175
BstKTI GATC 1 cut(s) 238
BstMBI GATC 1 cut(s) 235
BstSFI CTRYAG 1 cut(s) 135
Cac8I GCNNGC 1 cut(s) 177
CfoI GCGC 1 cut(s) 175
Cfr13I GGNCC 1 cut(s) 131
Csp6I GTAC 2 cut(s) 147, 304
CviJI RGCY 5 cut(s) 23, 53, 115, 245, 287
CviKI_1 RGCY 5 cut(s) 23, 53, 115, 245, 287
CviQI GTAC 2 cut(s) 147, 304
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
EciI GGCGGA 1 cut(s) 90
Ecl136II GAGCTC 1 cut(s) 53
Eco24I GRGCYC 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 131
Eco53kI GAGCTC 1 cut(s) 53
EcoICRI GAGCTC 1 cut(s) 53
EcoO109I RGGNCCY 1 cut(s) 131
EcoT38I GRGCYC 1 cut(s) 55
FaiI YATR 5 cut(s) 13, 15, 165, 171, 313
FauNDI CATATG 1 cut(s) 13
FriOI GRGCYC 1 cut(s) 55
FspBI CTAG 5 cut(s) 20, 24, 68, 86, 242
GlaI GCGC 1 cut(s) 174
HhaI GCGC 1 cut(s) 175
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HinfI GANTC 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 272
HpyCH4III ACNGT 1 cut(s) 303
HpyCH4IV ACGT 1 cut(s) 256
HpySE526I ACGT 1 cut(s) 256
HspAI GCGC 1 cut(s) 173
Kzo9I GATC 1 cut(s) 235
LmnI GCTCC 4 cut(s) 50, 58, 77, 284
LpnPI CCDG 6 cut(s) 33, 129, 147, 189, 204, 273
MaeI CTAG 5 cut(s) 20, 24, 68, 86, 242
MaeII ACGT 1 cut(s) 256
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MhlI GDGCHC 1 cut(s) 55
MluCI AATT 4 cut(s) 93, 124, 222, 316
MlyI GAGTC 1 cut(s) 76
MnlI CCTC 2 cut(s) 20, 254
MseI TTAA 3 cut(s) 59, 99, 225
MslI CAYNNNNRTG 1 cut(s) 168
NdeI CATATG 1 cut(s) 13
NdeII GATC 1 cut(s) 235
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
PpuMI RGGWCCY 1 cut(s) 131
Psp124BI GAGCTC 1 cut(s) 55
Psp5II RGGWCCY 1 cut(s) 131
PspPI GGNCC 1 cut(s) 131
PspPPI RGGWCCY 1 cut(s) 131
RsaI GTAC 2 cut(s) 148, 305
RsaNI GTAC 2 cut(s) 147, 304
RseI CAYNNNNRTG 1 cut(s) 168
SacI GAGCTC 1 cut(s) 55
SaqAI TTAA 3 cut(s) 59, 99, 225
Sau3AI GATC 1 cut(s) 235
Sau96I GGNCC 1 cut(s) 131
ScaI AGTACT 1 cut(s) 305
SchI GAGTC 1 cut(s) 76
SduI GDGCHC 1 cut(s) 55
SetI ASST 5 cut(s) 25, 55, 133, 259, 289
SfcI CTRYAG 1 cut(s) 135
SinI GGWCC 1 cut(s) 131
SmiMI CAYNNNNRTG 1 cut(s) 168
Sse9I AATT 4 cut(s) 93, 124, 222, 316
SsiI CCGC 1 cut(s) 75
SspMI CTAG 5 cut(s) 20, 24, 68, 86, 242
SstI GAGCTC 1 cut(s) 55
TaaI ACNGT 1 cut(s) 303
TaiI ACGT 1 cut(s) 259
TasI AATT 4 cut(s) 93, 124, 222, 316
TatI WGTACW 1 cut(s) 303
Tru1I TTAA 3 cut(s) 59, 99, 225
Tru9I TTAA 3 cut(s) 59, 99, 225
TspDTI ATGAA 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 131
XspI CTAG 5 cut(s) 20, 24, 68, 86, 242
ZrmI AGTACT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.