RchiOBHm_Chr7g0230641

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0020601
Physical Location & Seq
Reverse (-)
54185000 .. 54186138
1139 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 264 bp
ATGTTCAGTTTTGTGGTAGATGCCGGCTTCCTTGATAAAGCGAGAGAGCTCCTTATGCCTCTCTCTAATCAGGCAATGCTGCCGGAAGTGGCGGTCTTCACAATGGTCATTATGGCCTACGCTGGCGCTGGCAAGACCAAGGATGCTCACAAGGTCTACAGGCACATGTTAGGTACTGCTGTTACCCCCACTTCCTACACTTACACTGCATTATCACCGCTTGTGATGGGGTTGTCCCCAGCTCCTATACTTACTCAGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

87

Amino Acids

9.44

Weight (kDa)

8.08

Isoelectric Point (pI)

29.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 28 - 71 6.6e-09 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020601)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0230641
rosa_laevigata RLG00000001021
rosa_multiflora Rmu_co8057968.1_g000001 Rmu_sc0002222.1_g000013 Rmu_sc0004952.1_g000009 Rmu_sc0009140.1_g000012

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 156
AciI CCGC 2 cut(s) 92, 218
AfaI GTAC 1 cut(s) 175
AflIII ACRYGT 1 cut(s) 165
AluBI AGCT 2 cut(s) 49, 242
AluI AGCT 2 cut(s) 49, 242
Alw21I GWGCWC 1 cut(s) 51
AoxI GGCC 1 cut(s) 114
ApeKI GCWGC 1 cut(s) 79
AspLEI GCGC 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 207
BaeI ACNNNNGTAYC 2 cut(s) 165, 198
BanII GRGCYC 1 cut(s) 51
BbsI GAAGAC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 51
BbvI GCAGC 1 cut(s) 66
BccI CCATC 1 cut(s) 220
BfmI CTRYAG 1 cut(s) 157
BfoI RGCGCY 1 cut(s) 129
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
BmsI GCATC 2 cut(s) 10, 133
BpiI GAAGAC 1 cut(s) 88
BsaJI CCNNGG 1 cut(s) 138
Bse118I RCCGGY 1 cut(s) 23
Bse3DI GCAATG 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 148
BseMI GCAATG 1 cut(s) 81
BseXI GCAGC 1 cut(s) 66
BseYI CCCAGC 1 cut(s) 238
BshFI GGCC 1 cut(s) 116
BsiHKAI GWGCWC 1 cut(s) 51
BsiSI CCGG 2 cut(s) 24, 83
BslFI GGGAC 1 cut(s) 220
BsmFI GGGAC 1 cut(s) 220
BsnI GGCC 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 51
BspACI CCGC 2 cut(s) 92, 218
BspANI GGCC 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 81
BsrFI RCCGGY 1 cut(s) 23
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 138
BstC8I GCNNGC 3 cut(s) 25, 124, 130
BstDEI CTNAG 1 cut(s) 255
BstF5I GGATG 1 cut(s) 148
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstMWI GCNNNNNNNGC 1 cut(s) 55
BstNSI RCATGY 1 cut(s) 169
BstSFI CTRYAG 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 66
BstV2I GAAGAC 1 cut(s) 88
BsuRI GGCC 1 cut(s) 116
BtsCI GGATG 1 cut(s) 148
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 204
Cac8I GCNNGC 3 cut(s) 25, 124, 130
CfoI GCGC 1 cut(s) 128
Cfr10I RCCGGY 1 cut(s) 23
Csp6I GTAC 1 cut(s) 174
CviAII CATG 1 cut(s) 166
CviJI RGCY 4 cut(s) 27, 49, 116, 242
CviKI_1 RGCY 4 cut(s) 27, 49, 116, 242
CviQI GTAC 1 cut(s) 174
DdeI CTNAG 1 cut(s) 255
Ecl136II GAGCTC 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 51
Eco53kI GAGCTC 1 cut(s) 49
EcoICRI GAGCTC 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 138
EcoT38I GRGCYC 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 1 cut(s) 169
FaiI YATR 4 cut(s) 56, 113, 167, 248
FaqI GGGAC 1 cut(s) 220
FatI CATG 1 cut(s) 165
FblI GTMKAC 1 cut(s) 156
Fnu4HI GCNGC 1 cut(s) 80
FokI GGATG 1 cut(s) 155
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 1 cut(s) 80
GlaI GCGC 1 cut(s) 127
GluI GCNGC 1 cut(s) 80
GsaI CCCAGC 1 cut(s) 242
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 1 cut(s) 116
HapII CCGG 2 cut(s) 24, 83
HhaI GCGC 1 cut(s) 128
Hin1II CATG 1 cut(s) 169
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HpaII CCGG 2 cut(s) 24, 83
HphI GGTGA 1 cut(s) 207
Hpy166II GTNNAC 1 cut(s) 157
Hpy8I GTNNAC 1 cut(s) 157
HpyCH4V TGCA 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 55
HpyF3I CTNAG 1 cut(s) 255
Hsp92II CATG 1 cut(s) 169
HspAI GCGC 1 cut(s) 126
KroI GCCGGC 1 cut(s) 23
KroNI GCCGGC 1 cut(s) 25
LmnI GCTCC 2 cut(s) 54, 247
LpnPI CCDG 7 cut(s) 37, 56, 96, 108, 114, 145, 252
Lsp1109I GCAGC 1 cut(s) 66
LweI GCATC 2 cut(s) 10, 133
MaeIII GTNAC 1 cut(s) 181
MboII GAAGA 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 51
MnlI CCTC 1 cut(s) 69
MroNI GCCGGC 1 cut(s) 23
MseI TTAA 1 cut(s) 262
MspI CCGG 2 cut(s) 24, 83
MwoI GCNNNNNNNGC 1 cut(s) 55
NaeI GCCGGC 1 cut(s) 25
NgoMIV GCCGGC 1 cut(s) 23
NlaIII CATG 1 cut(s) 169
NspI RCATGY 1 cut(s) 169
PciI ACATGT 1 cut(s) 165
PdiI GCCGGC 1 cut(s) 25
PkrI GCNGC 1 cut(s) 81
PscI ACATGT 1 cut(s) 165
Psp124BI GAGCTC 1 cut(s) 51
PspFI CCCAGC 1 cut(s) 238
RsaI GTAC 1 cut(s) 175
RsaNI GTAC 1 cut(s) 174
SacI GAGCTC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 262
SatI GCNGC 1 cut(s) 80
SduI GDGCHC 1 cut(s) 51
SetI ASST 4 cut(s) 51, 156, 175, 244
SfaNI GCATC 2 cut(s) 10, 133
SfcI CTRYAG 1 cut(s) 157
SsiI CCGC 2 cut(s) 92, 218
SstI GAGCTC 1 cut(s) 51
StyI CCWWGG 1 cut(s) 138
Tru1I TTAA 1 cut(s) 262
Tru9I TTAA 1 cut(s) 262
TscAI CASTG 1 cut(s) 211
TseI GCWGC 1 cut(s) 79
TspRI CASTG 1 cut(s) 211
XceI RCATGY 1 cut(s) 169
XmiI GTMKAC 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.