Rmu_co8057968.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8057968.1
OG0020601
Physical Location & Seq
Forward (+)
1 .. 424
424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8057968.1_g000001.1.cds

Sequence Viewer

Length: 339 bp
atgttcagttttgtggtagatgccggcttccttgataaagcgagagagctccttatgcctctctctaatcaggcaatgctgccggaagtagcggtcttcacaatggtcattatggcctacgctggcgctggcaagaccaaggatgctcacaaggtctacaggcacatgttaggtactgctgttacccctactttctacgcttacactgcattatcaccgcttaagtacttgcttgagacgatggacaaggggaagcggcccaatgctgctacatacactgctgtgatagagacctttacaaggcagctgaggatgaaggcaaacagtttgtggaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

112

Amino Acids

12.57

Weight (kDa)

9.7

Isoelectric Point (pI)

35.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020601)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0230641
rosa_laevigata RLG00000001021
rosa_multiflora Rmu_co8057968.1_g000001 Rmu_sc0002222.1_g000013 Rmu_sc0004952.1_g000009 Rmu_sc0009140.1_g000012

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 156
AciI CCGC 3 cut(s) 92, 218, 256
AfaI GTAC 2 cut(s) 175, 227
AfiI CCNNNNNNNGG 1 cut(s) 300
AflII CTTAAG 1 cut(s) 221
AflIII ACRYGT 1 cut(s) 165
AleI CACNNNNGTG 1 cut(s) 281
AluBI AGCT 2 cut(s) 49, 307
AluI AGCT 2 cut(s) 49, 307
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 2 cut(s) 230, 284
AoxI GGCC 2 cut(s) 114, 257
ApeKI GCWGC 3 cut(s) 79, 266, 304
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 258
AsuHPI GGTGA 1 cut(s) 207
BaeI ACNNNNGTAYC 2 cut(s) 165, 198
BanII GRGCYC 1 cut(s) 51
BbsI GAAGAC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 51
BbvCI CCTCAGC 1 cut(s) 308
BbvI GCAGC 3 cut(s) 66, 253, 316
BccI CCATC 1 cut(s) 235
BcoDI GTCTC 2 cut(s) 230, 284
BfmI CTRYAG 1 cut(s) 157
BfoI RGCGCY 1 cut(s) 129
BfrI CTTAAG 1 cut(s) 221
BisI GCNGC 4 cut(s) 80, 257, 267, 305
BlsI GCNGC 4 cut(s) 81, 258, 268, 306
BmcAI AGTACT 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 258
BmsI GCATC 2 cut(s) 10, 133
BpiI GAAGAC 1 cut(s) 88
Bpu10I CCTNAGC 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 254
BsaI GGTCTC 1 cut(s) 284
BsaJI CCNNGG 1 cut(s) 138
Bsc4I CCNNNNNNNGG 1 cut(s) 300
Bse118I RCCGGY 1 cut(s) 23
Bse3DI GCAATG 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 2 cut(s) 148, 318
BseLI CCNNNNNNNGG 1 cut(s) 300
BseMI GCAATG 1 cut(s) 81
BseMII CTCAG 1 cut(s) 299
BseXI GCAGC 3 cut(s) 66, 253, 316
BshFI GGCC 2 cut(s) 116, 259
BsiHKAI GWGCWC 1 cut(s) 51
BsiSI CCGG 2 cut(s) 24, 83
BslI CCNNNNNNNGG 1 cut(s) 300
BsmAI GTCTC 2 cut(s) 230, 284
BsmBI CGTCTC 1 cut(s) 230
BsnI GGCC 2 cut(s) 116, 259
Bso31I GGTCTC 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 51
BspACI CCGC 3 cut(s) 92, 218, 256
BspANI GGCC 2 cut(s) 116, 259
BspCNI CTCAG 1 cut(s) 300
BspTI CTTAAG 1 cut(s) 221
BspTNI GGTCTC 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 81
BsrFI RCCGGY 1 cut(s) 23
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 326
BstAFI CTTAAG 1 cut(s) 221
BstC8I GCNNGC 3 cut(s) 25, 124, 130
BstDEI CTNAG 1 cut(s) 308
BstENI CCTNNNNNAGG 1 cut(s) 298
BstF5I GGATG 2 cut(s) 148, 318
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstMAI GTCTC 2 cut(s) 230, 284
BstMWI GCNNNNNNNGC 2 cut(s) 55, 206
BstNSI RCATGY 1 cut(s) 169
BstSFI CTRYAG 1 cut(s) 157
BstV1I GCAGC 3 cut(s) 66, 253, 316
BstV2I GAAGAC 1 cut(s) 88
BsuRI GGCC 2 cut(s) 116, 259
BtsCI GGATG 2 cut(s) 148, 318
BtsI GCAGTG 2 cut(s) 204, 276
BtsIMutI CAGTG 2 cut(s) 204, 276
Cac8I GCNNGC 3 cut(s) 25, 124, 130
CfoI GCGC 1 cut(s) 128
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 258
Csp6I GTAC 2 cut(s) 174, 226
CviAII CATG 1 cut(s) 166
CviJI RGCY 5 cut(s) 27, 49, 116, 259, 307
CviKI_1 RGCY 5 cut(s) 27, 49, 116, 259, 307
CviQI GTAC 2 cut(s) 174, 226
DdeI CTNAG 1 cut(s) 308
Ecl136II GAGCTC 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 284
Eco53kI GAGCTC 1 cut(s) 49
EcoICRI GAGCTC 1 cut(s) 49
EcoNI CCTNNNNNAGG 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 138
EcoT38I GRGCYC 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 138
Esp3I CGTCTC 1 cut(s) 230
FaeI CATG 1 cut(s) 169
FaiI YATR 4 cut(s) 56, 113, 167, 274
FatI CATG 1 cut(s) 165
FblI GTMKAC 1 cut(s) 156
Fnu4HI GCNGC 4 cut(s) 80, 257, 267, 305
FokI GGATG 2 cut(s) 155, 325
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 4 cut(s) 80, 257, 267, 305
GlaI GCGC 1 cut(s) 127
GluI GCNGC 4 cut(s) 80, 257, 267, 305
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 2 cut(s) 116, 259
HapII CCGG 2 cut(s) 24, 83
HhaI GCGC 1 cut(s) 128
Hin1II CATG 1 cut(s) 169
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HpaII CCGG 2 cut(s) 24, 83
HphI GGTGA 1 cut(s) 207
Hpy166II GTNNAC 1 cut(s) 157
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 310
HpyCH4III ACNGT 1 cut(s) 326
HpyCH4V TGCA 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 206
HpyF3I CTNAG 1 cut(s) 308
Hsp92II CATG 1 cut(s) 169
HspAI GCGC 1 cut(s) 126
KroI GCCGGC 1 cut(s) 23
KroNI GCCGGC 1 cut(s) 25
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 6 cut(s) 37, 56, 96, 108, 114, 145
Lsp1109I GCAGC 3 cut(s) 66, 253, 316
LweI GCATC 2 cut(s) 10, 133
MaeIII GTNAC 1 cut(s) 181
MboII GAAGA 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 51
MnlI CCTC 2 cut(s) 69, 303
MroNI GCCGGC 1 cut(s) 23
MseI TTAA 1 cut(s) 222
MslI CAYNNNNRTG 1 cut(s) 281
MspA1I CMGCKG 1 cut(s) 307
MspCI CTTAAG 1 cut(s) 221
MspI CCGG 2 cut(s) 24, 83
MwoI GCNNNNNNNGC 2 cut(s) 55, 206
NaeI GCCGGC 1 cut(s) 25
NgoMIV GCCGGC 1 cut(s) 23
NlaIII CATG 1 cut(s) 169
NspI RCATGY 1 cut(s) 169
OliI CACNNNNGTG 1 cut(s) 281
PciI ACATGT 1 cut(s) 165
PdiI GCCGGC 1 cut(s) 25
PkrI GCNGC 4 cut(s) 81, 258, 268, 306
PscI ACATGT 1 cut(s) 165
Psp124BI GAGCTC 1 cut(s) 51
PspPI GGNCC 1 cut(s) 258
PvuII CAGCTG 1 cut(s) 307
RsaI GTAC 2 cut(s) 175, 227
RsaNI GTAC 2 cut(s) 174, 226
RseI CAYNNNNRTG 1 cut(s) 281
SacI GAGCTC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 4 cut(s) 80, 257, 267, 305
Sau96I GGNCC 1 cut(s) 258
ScaI AGTACT 1 cut(s) 227
SduI GDGCHC 1 cut(s) 51
SetI ASST 5 cut(s) 51, 156, 175, 296, 309
SfaNI GCATC 2 cut(s) 10, 133
SfcI CTRYAG 1 cut(s) 157
SmiMI CAYNNNNRTG 1 cut(s) 281
SmlI CTYRAG 2 cut(s) 221, 233
SmoI CTYRAG 2 cut(s) 221, 233
SsiI CCGC 3 cut(s) 92, 218, 256
SstI GAGCTC 1 cut(s) 51
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 326
TatI WGTACW 1 cut(s) 225
TauI GCSGC 1 cut(s) 259
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 2 cut(s) 211, 283
TseI GCWGC 3 cut(s) 79, 266, 304
TspDTI ATGAA 1 cut(s) 329
TspRI CASTG 2 cut(s) 211, 283
Vha464I CTTAAG 1 cut(s) 221
XagI CCTNNNNNAGG 1 cut(s) 298
XceI RCATGY 1 cut(s) 169
XmiI GTMKAC 1 cut(s) 156
ZrmI AGTACT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.