RLG00000001021

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0020601
Physical Location & Seq
Reverse (-)
9282413 .. 9282854
442 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001021

Sequence Viewer

Length: 330 bp
ATGAAGGTTTTCGAAGATGTGACCAAACACTGTGAGGACGAGAAGTTGAGAATTCAATTTGACAAGGCCATACTGTTTGAACTGACGGTCTTCACCATGGTCACTATGGCCTACTCCGGGGCTGGCAAGACCAAGGATGCTCACAAGGTCTACCAGCACATGTTAGGTACCGGTGTTACCCCCACCTCCTACACCTACACTGCATTCATCACCGCTGGTGATGGGGTTGTCCCCAACTCCTATACTTACTCGGTTTTAATTAAGGGACTCGATGCTGACCCCAACTTTTTTGGAGACGATAGACAAGGGGAAGCGGCCCAATGCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

110

Amino Acids

12.06

Weight (kDa)

5.18

Isoelectric Point (pI)

6.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 36 - 71 2.2e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020601)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0230641
rosa_laevigata RLG00000001021
rosa_multiflora Rmu_co8057968.1_g000001 Rmu_sc0002222.1_g000013 Rmu_sc0004952.1_g000009 Rmu_sc0009140.1_g000012

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 167
AccB1I GGYRCC 1 cut(s) 167
AccI GTMKAC 1 cut(s) 150
AciI CCGC 2 cut(s) 213, 314
AcsI RAATTY 1 cut(s) 51
AfaI GTAC 1 cut(s) 169
AfiI CCNNNNNNNGG 1 cut(s) 117
AflIII ACRYGT 1 cut(s) 159
AgeI ACCGGT 1 cut(s) 170
AgsI TTSAA 2 cut(s) 56, 80
Alw26I GTCTC 1 cut(s) 288
AoxI GGCC 3 cut(s) 66, 108, 315
ApeKI GCWGC 1 cut(s) 324
ApoI RAATTY 1 cut(s) 51
AsiGI ACCGGT 1 cut(s) 170
Asp700I GAANNNNTTC 1 cut(s) 8
Asp718I GGTACC 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 316
AsuC2I CCSGG 1 cut(s) 118
AsuHPI GGTGA 3 cut(s) 85, 202, 230
AsuII TTCGAA 1 cut(s) 12
BaeI ACNNNNGTAYC 2 cut(s) 159, 192
BanI GGYRCC 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 82
BbvI GCAGC 1 cut(s) 311
BccI CCATC 1 cut(s) 215
BcnI CCSGG 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 288
BisI GCNGC 2 cut(s) 315, 325
BlsI GCNGC 2 cut(s) 316, 326
Bme1390I CCNGG 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 316
BmiI GGNNCC 1 cut(s) 169
BmrFI CCNGG 1 cut(s) 118
BmsI GCATC 2 cut(s) 127, 262
BpiI GAAGAC 1 cut(s) 82
Bpu14I TTCGAA 1 cut(s) 12
BpuMI CCSGG 1 cut(s) 118
BsaJI CCNNGG 3 cut(s) 96, 117, 132
BsaWI WCCGGW 1 cut(s) 170
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse118I RCCGGY 1 cut(s) 170
BseDI CCNNGG 3 cut(s) 96, 117, 132
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 117
BseXI GCAGC 1 cut(s) 311
BshFI GGCC 3 cut(s) 68, 110, 317
BshNI GGYRCC 1 cut(s) 167
BshTI ACCGGT 1 cut(s) 170
BsiSI CCGG 2 cut(s) 117, 171
BslFI GGGAC 2 cut(s) 215, 279
BslI CCNNNNNNNGG 1 cut(s) 117
BsmAI GTCTC 1 cut(s) 288
BsmBI CGTCTC 1 cut(s) 288
BsmFI GGGAC 2 cut(s) 215, 279
BsmI GAATGC 1 cut(s) 203
BsnI GGCC 3 cut(s) 68, 110, 317
Bsp119I TTCGAA 1 cut(s) 12
Bsp19I CCATGG 1 cut(s) 96
BspACI CCGC 2 cut(s) 213, 314
BspANI GGCC 3 cut(s) 68, 110, 317
BspLI GGNNCC 1 cut(s) 169
BspT104I TTCGAA 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 167
BsrFI RCCGGY 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 170
BssECI CCNNGG 3 cut(s) 96, 117, 132
BssT1I CCWWGG 2 cut(s) 96, 132
Bst4CI ACNGT 3 cut(s) 32, 75, 88
BstBI TTCGAA 1 cut(s) 12
BstC8I GCNNGC 1 cut(s) 124
BstDSI CCRYGG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 142
BstMAI GTCTC 1 cut(s) 288
BstNSI RCATGY 1 cut(s) 163
BstSCI CCNGG 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 311
BstV2I GAAGAC 1 cut(s) 82
BsuRI GGCC 3 cut(s) 68, 110, 317
BtgI CCRYGG 1 cut(s) 96
BtsCI GGATG 1 cut(s) 142
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 2 cut(s) 28, 198
Cac8I GCNNGC 1 cut(s) 124
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 1 cut(s) 316
Csp6I GTAC 1 cut(s) 168
CspAI ACCGGT 1 cut(s) 170
CviAII CATG 2 cut(s) 97, 160
CviJI RGCY 4 cut(s) 68, 110, 122, 317
CviKI_1 RGCY 4 cut(s) 68, 110, 122, 317
CviQI GTAC 1 cut(s) 168
Eco130I CCWWGG 2 cut(s) 96, 132
EcoRI GAATTC 1 cut(s) 51
EcoT14I CCWWGG 2 cut(s) 96, 132
ErhI CCWWGG 2 cut(s) 96, 132
Esp3I CGTCTC 1 cut(s) 288
FaeI CATG 2 cut(s) 100, 163
FaiI YATR 5 cut(s) 71, 98, 107, 161, 243
FaqI GGGAC 2 cut(s) 215, 279
FatI CATG 2 cut(s) 96, 159
FblI GTMKAC 1 cut(s) 150
Fnu4HI GCNGC 2 cut(s) 315, 325
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 2 cut(s) 315, 325
GluI GCNGC 2 cut(s) 315, 325
HaeIII GGCC 3 cut(s) 68, 110, 317
HapII CCGG 2 cut(s) 117, 171
Hin1II CATG 2 cut(s) 100, 163
HinfI GANTC 1 cut(s) 267
HpaII CCGG 2 cut(s) 117, 171
HphI GGTGA 3 cut(s) 85, 202, 230
Hpy166II GTNNAC 1 cut(s) 151
Hpy8I GTNNAC 1 cut(s) 151
HpyCH4III ACNGT 3 cut(s) 32, 75, 88
HpyCH4V TGCA 1 cut(s) 203
Hsp92II CATG 2 cut(s) 100, 163
KpnI GGTACC 1 cut(s) 171
LpnPI CCDG 5 cut(s) 108, 130, 167, 184, 201
Lsp1109I GCAGC 1 cut(s) 311
LweI GCATC 2 cut(s) 127, 262
MaeIII GTNAC 3 cut(s) 19, 100, 175
MboII GAAGA 2 cut(s) 26, 82
MluCI AATT 3 cut(s) 51, 56, 258
MlyI GAGTC 1 cut(s) 261
MnlI CCTC 2 cut(s) 28, 196
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 2 cut(s) 257, 261
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 2 cut(s) 117, 171
MspR9I CCNGG 1 cut(s) 118
Mva1269I GAATGC 1 cut(s) 203
NciI CCSGG 1 cut(s) 118
NcoI CCATGG 1 cut(s) 96
NlaIII CATG 2 cut(s) 100, 163
NlaIV GGNNCC 1 cut(s) 169
NmuCI GTSAC 2 cut(s) 19, 100
NspI RCATGY 1 cut(s) 163
NspV TTCGAA 1 cut(s) 12
PacI TTAATTAA 1 cut(s) 261
PciI ACATGT 1 cut(s) 159
PctI GAATGC 1 cut(s) 203
PdmI GAANNNNTTC 1 cut(s) 8
PinAI ACCGGT 1 cut(s) 170
PkrI GCNGC 2 cut(s) 316, 326
PleI GAGTC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 261
PscI ACATGT 1 cut(s) 159
PspN4I GGNNCC 1 cut(s) 169
PspPI GGNCC 1 cut(s) 316
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
SaqAI TTAA 2 cut(s) 257, 261
SatI GCNGC 2 cut(s) 315, 325
Sau96I GGNCC 1 cut(s) 316
SchI GAGTC 1 cut(s) 261
ScrFI CCNGG 1 cut(s) 118
SetI ASST 5 cut(s) 9, 150, 169, 188, 197
SfaNI GCATC 2 cut(s) 127, 262
SfuI TTCGAA 1 cut(s) 12
Sse9I AATT 3 cut(s) 51, 56, 258
SsiI CCGC 2 cut(s) 213, 314
StyD4I CCNGG 1 cut(s) 116
StyI CCWWGG 2 cut(s) 96, 132
TaaI ACNGT 3 cut(s) 32, 75, 88
TaqI TCGA 2 cut(s) 12, 270
TasI AATT 3 cut(s) 51, 56, 258
TauI GCSGC 1 cut(s) 317
Tru1I TTAA 2 cut(s) 257, 261
Tru9I TTAA 2 cut(s) 257, 261
TscAI CASTG 2 cut(s) 35, 205
TseFI GTSAC 2 cut(s) 19, 100
TseI GCWGC 1 cut(s) 324
Tsp45I GTSAC 2 cut(s) 19, 100
TspDTI ATGAA 2 cut(s) 17, 196
TspRI CASTG 2 cut(s) 35, 205
XapI RAATTY 1 cut(s) 51
XceI RCATGY 1 cut(s) 163
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
XmiI GTMKAC 1 cut(s) 150
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.