RchiOBHm_Chr7g0232561

ABC transporter I family member

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
56655814 .. 56656944
1131 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 216 bp
ATGACTTTTTCACCACAGAAGTTCACGGTTCTGGACAGTGTTGAGTGCTCTGATCTTCTTGAAGGAAAGCTAGGAAATTCTTCACCTGCTTCACAGCTGATGGGGATGAGGAGAATGGCGAAGGAGAAAGCAAGAATGATGAATGCTGTCAATGGGGCAGTGTCGAAGAGCTTGCAGCAGCTCACGAGGTTGCTAGTAATCGACATGCCTATTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

71

Amino Acids

7.8

Weight (kDa)

9.51

Isoelectric Point (pI)

58.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020604)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0232561
rosa_laevigata RLG00000001324 RLG00000001374
rosa_samantha Rh7AG429500 Rh7CG448400 Rh7DG419300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 94
Acc36I ACCTGC 1 cut(s) 94
AcsI RAATTY 1 cut(s) 76
AgsI TTSAA 1 cut(s) 62
AluBI AGCT 4 cut(s) 70, 97, 171, 181
AluI AGCT 4 cut(s) 70, 97, 171, 181
Alw21I GWGCWC 1 cut(s) 50
ApeKI GCWGC 2 cut(s) 175, 178
ApoI RAATTY 1 cut(s) 76
Asp700I GAANNNNTTC 1 cut(s) 79
AsuHPI GGTGA 2 cut(s) 3, 75
BauI CACGAG 1 cut(s) 184
Bbv12I GWGCWC 1 cut(s) 50
BbvI GCAGC 2 cut(s) 187, 190
BccI CCATC 1 cut(s) 94
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BfaI CTAG 2 cut(s) 71, 194
BfuAI ACCTGC 1 cut(s) 94
BisI GCNGC 2 cut(s) 176, 179
BlsI GCNGC 2 cut(s) 177, 180
BseGI GGATG 1 cut(s) 111
BseRI GAGGAG 1 cut(s) 124
BseXI GCAGC 2 cut(s) 187, 190
BsiHKAI GWGCWC 1 cut(s) 50
BsmI GAATGC 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 50
Bsp143I GATC 1 cut(s) 52
BspMI ACCTGC 1 cut(s) 94
BspQI GCTCTTC 1 cut(s) 161
BssMI GATC 1 cut(s) 52
BssSI CACGAG 1 cut(s) 184
Bst2BI CACGAG 1 cut(s) 184
Bst4CI ACNGT 2 cut(s) 28, 38
Bst6I CTCTTC 1 cut(s) 161
BstC8I GCNNGC 1 cut(s) 173
BstF5I GGATG 1 cut(s) 111
BstKTI GATC 1 cut(s) 55
BstMBI GATC 1 cut(s) 52
BstNSI RCATGY 1 cut(s) 208
BstV1I GCAGC 2 cut(s) 187, 190
BtsCI GGATG 1 cut(s) 111
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 2 cut(s) 43, 165
BveI ACCTGC 1 cut(s) 94
Cac8I GCNNGC 1 cut(s) 173
CviAII CATG 1 cut(s) 205
CviJI RGCY 4 cut(s) 70, 97, 171, 181
CviKI_1 RGCY 4 cut(s) 70, 97, 171, 181
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
FaeI CATG 1 cut(s) 208
FaiI YATR 1 cut(s) 206
FatI CATG 1 cut(s) 204
Fnu4HI GCNGC 2 cut(s) 176, 179
FokI GGATG 1 cut(s) 118
Fsp4HI GCNGC 2 cut(s) 176, 179
FspBI CTAG 2 cut(s) 71, 194
GluI GCNGC 2 cut(s) 176, 179
Hin1II CATG 1 cut(s) 208
HphI GGTGA 2 cut(s) 3, 75
Hpy166II GTNNAC 1 cut(s) 24
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 3 cut(s) 32, 59, 184
Hpy8I GTNNAC 1 cut(s) 24
HpyAV CCTTC 2 cut(s) 56, 115
HpyCH4III ACNGT 2 cut(s) 28, 38
HpyCH4V TGCA 1 cut(s) 175
Hsp92II CATG 1 cut(s) 208
Kzo9I GATC 1 cut(s) 52
LguI GCTCTTC 1 cut(s) 161
LpnPI CCDG 2 cut(s) 17, 99
Lsp1109I GCAGC 2 cut(s) 187, 190
MaeI CTAG 2 cut(s) 71, 194
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MboII GAAGA 3 cut(s) 47, 72, 178
MhlI GDGCHC 1 cut(s) 50
MluCI AATT 1 cut(s) 76
MnlI CCTC 2 cut(s) 102, 180
MroXI GAANNNNTTC 1 cut(s) 79
MspA1I CMGCKG 1 cut(s) 97
Mva1269I GAATGC 1 cut(s) 148
NdeII GATC 1 cut(s) 52
NlaIII CATG 1 cut(s) 208
NspI RCATGY 1 cut(s) 208
PaqCI CACCTGC 1 cut(s) 94
PciSI GCTCTTC 1 cut(s) 161
PctI GAATGC 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 79
PkrI GCNGC 2 cut(s) 177, 180
PvuII CAGCTG 1 cut(s) 97
SapI GCTCTTC 1 cut(s) 161
SatI GCNGC 2 cut(s) 176, 179
Sau3AI GATC 1 cut(s) 52
SduI GDGCHC 1 cut(s) 50
SetI ASST 6 cut(s) 72, 88, 99, 173, 183, 191
Sse9I AATT 1 cut(s) 76
SspMI CTAG 2 cut(s) 71, 194
TaaI ACNGT 2 cut(s) 28, 38
TaqI TCGA 2 cut(s) 164, 201
TasI AATT 1 cut(s) 76
TscAI CASTG 2 cut(s) 43, 165
TseI GCWGC 2 cut(s) 175, 178
TspDTI ATGAA 1 cut(s) 155
TspRI CASTG 2 cut(s) 43, 165
XapI RAATTY 1 cut(s) 76
XceI RCATGY 1 cut(s) 208
XmnI GAANNNNTTC 1 cut(s) 79
XspI CTAG 2 cut(s) 71, 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.