Rh7AG429500

ABC transporter I family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0020604
Physical Location & Seq
Reverse (-)
57692761 .. 57695350
2590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG429500.1

Sequence Viewer

Length: 546 bp
ATGTGTGTAAATCTGTTTTCTTTATCATCATGTCATAGCTGGGATCATCAGAGGACAGATGGTTACTTTTGGTCTTGGATGATTTCTTTGGTTGGGACTTGGTTTGGTTCTCTGGAATGGGCACGAGATGGCAGATTTATGAGTTTTTCACCACAGAAGTTCACGGTTCTGGACAGTCTTGAGTGCTCTGATCTTCTTGAAGGAAAGCTAGGAAATTCTTCACCTGCTTCACAGCTGATGGGGATGAGGAGAATGGTGAAGGAGAAAGCAAGAATGATGAATGCTGTCAATGGGGCAGTCGAAGAGCTTGCAGCAGCTCACGAGGTTGCTGTTGTTTGCAAAACAAAATCTAGTTCAACATCCTTGATGGTGCTGAGGGGGTATGAGCTCATGCCATATGGTAGCCTCAACATGCATCCTGCTCGACAGAAGCTTCAACTCGATTGTTGTCCTATCCTGGAAGCAAAGGTTGTGTCTGCCTTTGCATATTTTCATGAAGACTGGGTGGAAGACACGAGATGTCAAAGCTTGCAACATAATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran

Protein Analysis

181

Amino Acids

20.5

Weight (kDa)

6.06

Isoelectric Point (pI)

45.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020604)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0232561
rosa_laevigata RLG00000001324 RLG00000001374
rosa_samantha Rh7AG429500 Rh7CG448400 Rh7DG419300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 232
Acc36I ACCTGC 1 cut(s) 232
AclWI GGATC 1 cut(s) 51
AcsI RAATTY 1 cut(s) 214
AgsI TTSAA 3 cut(s) 200, 357, 437
AjnI CCWGG 1 cut(s) 456
AluBI AGCT 8 cut(s) 39, 208, 235, 307, 317, 388, 433, 528
AluI AGCT 8 cut(s) 39, 208, 235, 307, 317, 388, 433, 528
Alw21I GWGCWC 2 cut(s) 188, 390
AlwI GGATC 1 cut(s) 51
ApeKI GCWGC 2 cut(s) 311, 314
ApoI RAATTY 1 cut(s) 214
ArsI GACNNNNNNTTYG 2 cut(s) 458, 490
Asp700I GAANNNNTTC 1 cut(s) 217
AsuHPI GGTGA 3 cut(s) 141, 213, 268
BaeGI GKGCMC 1 cut(s) 124
BanII GRGCYC 1 cut(s) 390
BauI CACGAG 3 cut(s) 123, 320, 514
BbsI GAAGAC 2 cut(s) 504, 516
Bbv12I GWGCWC 2 cut(s) 188, 390
BbvCI CCTCAGC 1 cut(s) 374
BbvI GCAGC 2 cut(s) 323, 326
BccI CCATC 4 cut(s) 53, 122, 232, 361
BcgI CGANNNNNNTGC 4 cut(s) 290, 324, 404, 438
BciT130I CCWGG 1 cut(s) 458
BfaI CTAG 2 cut(s) 209, 351
BfuAI ACCTGC 1 cut(s) 232
BisI GCNGC 2 cut(s) 312, 315
BlsI GCNGC 2 cut(s) 313, 316
Bme1390I CCNGG 1 cut(s) 458
BmrFI CCNGG 1 cut(s) 458
BmrI ACTGGG 1 cut(s) 511
BmsI GCATC 1 cut(s) 424
BmuI ACTGGG 1 cut(s) 511
BpiI GAAGAC 2 cut(s) 504, 516
Bpu10I CCTNAGC 1 cut(s) 374
BpuEI CTTGAG 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 506
BseBI CCWGG 1 cut(s) 458
BseGI GGATG 4 cut(s) 84, 249, 359, 415
BseMII CTCAG 1 cut(s) 365
BseNI ACTGG 1 cut(s) 506
BseRI GAGGAG 1 cut(s) 262
BseSI GKGCMC 1 cut(s) 124
BseXI GCAGC 2 cut(s) 323, 326
BseYI CCCAGC 1 cut(s) 39
BsiHKAI GWGCWC 2 cut(s) 188, 390
BslFI GGGAC 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 109
BsmI GAATGC 1 cut(s) 286
Bsp1286I GDGCHC 3 cut(s) 124, 188, 390
Bsp143I GATC 2 cut(s) 43, 190
BspCNI CTCAG 1 cut(s) 366
BspHI TCATGA 1 cut(s) 493
BspMI ACCTGC 1 cut(s) 232
BspPI GGATC 1 cut(s) 51
BspQI GCTCTTC 1 cut(s) 297
BsrI ACTGG 1 cut(s) 506
BssMI GATC 2 cut(s) 43, 190
BssSI CACGAG 3 cut(s) 123, 320, 514
Bst2BI CACGAG 3 cut(s) 123, 320, 514
Bst2UI CCWGG 1 cut(s) 458
Bst4CI ACNGT 2 cut(s) 166, 176
Bst6I CTCTTC 1 cut(s) 297
BstC8I GCNNGC 2 cut(s) 309, 530
BstDEI CTNAG 1 cut(s) 374
BstF5I GGATG 4 cut(s) 84, 249, 359, 415
BstKTI GATC 2 cut(s) 46, 193
BstMBI GATC 2 cut(s) 43, 190
BstNI CCWGG 1 cut(s) 458
BstNSI RCATGY 1 cut(s) 415
BstSCI CCNGG 1 cut(s) 456
BstSLI GKGCMC 1 cut(s) 124
BstV1I GCAGC 2 cut(s) 323, 326
BstV2I GAAGAC 2 cut(s) 504, 516
BtsCI GGATG 4 cut(s) 84, 249, 359, 415
BveI ACCTGC 1 cut(s) 232
Cac8I GCNNGC 2 cut(s) 309, 530
CciI TCATGA 1 cut(s) 493
CviAII CATG 4 cut(s) 30, 391, 412, 494
CviJI RGCY 9 cut(s) 39, 208, 235, 307, 317, 388, 405, 433, 528
CviKI_1 RGCY 9 cut(s) 39, 208, 235, 307, 317, 388, 405, 433, 528
DdeI CTNAG 1 cut(s) 374
DpnI GATC 2 cut(s) 45, 192
DpnII GATC 2 cut(s) 43, 190
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Ecl136II GAGCTC 1 cut(s) 388
Eco24I GRGCYC 1 cut(s) 390
Eco53kI GAGCTC 1 cut(s) 388
EcoICRI GAGCTC 1 cut(s) 388
EcoRII CCWGG 1 cut(s) 456
EcoT22I ATGCAT 1 cut(s) 417
EcoT38I GRGCYC 1 cut(s) 390
FaeI CATG 4 cut(s) 33, 394, 415, 497
FaqI GGGAC 1 cut(s) 109
FatI CATG 4 cut(s) 29, 390, 411, 493
FauNDI CATATG 1 cut(s) 397
Fnu4HI GCNGC 2 cut(s) 312, 315
FokI GGATG 4 cut(s) 91, 256, 346, 402
FriOI GRGCYC 1 cut(s) 390
Fsp4HI GCNGC 2 cut(s) 312, 315
FspBI CTAG 2 cut(s) 209, 351
GluI GCNGC 2 cut(s) 312, 315
GsaI CCCAGC 1 cut(s) 43
Hin1II CATG 4 cut(s) 33, 394, 415, 497
HindIII AAGCTT 2 cut(s) 431, 526
HphI GGTGA 3 cut(s) 141, 213, 268
Hpy166II GTNNAC 1 cut(s) 162
Hpy188I TCNGA 2 cut(s) 51, 190
Hpy188III TCNNGA 6 cut(s) 113, 170, 179, 197, 320, 494
Hpy8I GTNNAC 1 cut(s) 162
HpyAV CCTTC 2 cut(s) 194, 253
HpyCH4III ACNGT 2 cut(s) 166, 176
HpyCH4V TGCA 5 cut(s) 311, 339, 415, 485, 532
HpyF3I CTNAG 1 cut(s) 374
Hsp92II CATG 4 cut(s) 33, 394, 415, 497
Kzo9I GATC 2 cut(s) 43, 190
LguI GCTCTTC 1 cut(s) 297
LpnPI CCDG 8 cut(s) 25, 98, 155, 237, 432, 443, 470, 487
Lsp1109I GCAGC 2 cut(s) 323, 326
LweI GCATC 1 cut(s) 424
MaeI CTAG 2 cut(s) 209, 351
MaeIII GTNAC 1 cut(s) 62
MalI GATC 2 cut(s) 45, 192
MboI GATC 2 cut(s) 43, 190
MboII GAAGA 5 cut(s) 185, 210, 314, 509, 521
MhlI GDGCHC 3 cut(s) 124, 188, 390
MluCI AATT 1 cut(s) 214
MnlI CCTC 5 cut(s) 45, 240, 316, 369, 416
Mph1103I ATGCAT 1 cut(s) 417
MroXI GAANNNNTTC 1 cut(s) 217
MspA1I CMGCKG 1 cut(s) 235
MspR9I CCNGG 1 cut(s) 458
Mva1269I GAATGC 1 cut(s) 286
MvaI CCWGG 1 cut(s) 458
NdeI CATATG 1 cut(s) 397
NdeII GATC 2 cut(s) 43, 190
NlaIII CATG 4 cut(s) 33, 394, 415, 497
NsiI ATGCAT 1 cut(s) 417
NspI RCATGY 1 cut(s) 415
PagI TCATGA 1 cut(s) 493
PaqCI CACCTGC 1 cut(s) 232
PciSI GCTCTTC 1 cut(s) 297
PctI GAATGC 1 cut(s) 286
PdmI GAANNNNTTC 1 cut(s) 217
PfoI TCCNGGA 1 cut(s) 456
PkrI GCNGC 2 cut(s) 313, 316
Psp124BI GAGCTC 1 cut(s) 390
Psp6I CCWGG 1 cut(s) 456
PspFI CCCAGC 1 cut(s) 39
PspGI CCWGG 1 cut(s) 456
PvuII CAGCTG 1 cut(s) 235
SacI GAGCTC 1 cut(s) 390
SapI GCTCTTC 1 cut(s) 297
SatI GCNGC 2 cut(s) 312, 315
Sau3AI GATC 2 cut(s) 43, 190
ScrFI CCNGG 1 cut(s) 458
SduI GDGCHC 3 cut(s) 124, 188, 390
SfaNI GCATC 1 cut(s) 424
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 1 cut(s) 214
SspMI CTAG 2 cut(s) 209, 351
SstI GAGCTC 1 cut(s) 390
StyD4I CCNGG 1 cut(s) 456
TaaI ACNGT 2 cut(s) 166, 176
TaqI TCGA 3 cut(s) 300, 424, 441
TasI AATT 1 cut(s) 214
TseI GCWGC 2 cut(s) 311, 314
TspDTI ATGAA 3 cut(s) 293, 482, 510
XapI RAATTY 1 cut(s) 214
XceI RCATGY 1 cut(s) 415
XmnI GAANNNNTTC 1 cut(s) 217
XspI CTAG 2 cut(s) 209, 351
Zsp2I ATGCAT 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.