RLG00000001324

ABC transporter I family member

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
14129040 .. 14130079
1040 bp
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UTR
Exon/CDS
Intron
RLM00000001324

Sequence Viewer

Length: 312 bp
ATGTGGCTGGGATCATCAGAGGACAGATGGTTACTTTTGGTCTTGGATGATTTCTTTGGTCCTCTGGAATGGGCACGAGTTGGCAGCTTTATGAGTTTTTCACCACAGAAGTTCACGGTTCTGGATAGTGTTGAGTGCTCTGATCTTCTTGAAGGAAAGCTAGGAACTTCTTCACCTGCTTCACAGCTGATGGGGATGAGGAGAATGGCGAAGGAGAAAGCAAGAATGATGAATGCTGTCAATGGGGCAGTCGAAGAGCTTGCAGCAGCTGACGAGGTTGCTAGTAATCGACATGCCTATTTGATTGCTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

11.39

Weight (kDa)

4.86

Isoelectric Point (pI)

49.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020604)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0232561
rosa_laevigata RLG00000001324 RLG00000001374
rosa_samantha Rh7AG429500 Rh7CG448400 Rh7DG419300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 184
Acc36I ACCTGC 1 cut(s) 184
AclWI GGATC 1 cut(s) 19
AgsI TTSAA 1 cut(s) 152
AluBI AGCT 5 cut(s) 87, 160, 187, 259, 269
AluI AGCT 5 cut(s) 87, 160, 187, 259, 269
Alw21I GWGCWC 1 cut(s) 140
AlwI GGATC 1 cut(s) 19
AlwNI CAGNNNCTG 1 cut(s) 269
ApeKI GCWGC 3 cut(s) 84, 263, 266
Asp700I GAANNNNTTC 1 cut(s) 169
AspS9I GGNCC 1 cut(s) 59
AsuHPI GGTGA 2 cut(s) 93, 165
AvaII GGWCC 1 cut(s) 59
BaeGI GKGCMC 1 cut(s) 76
BauI CACGAG 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 140
BbvI GCAGC 3 cut(s) 96, 275, 278
BccI CCATC 2 cut(s) 21, 184
BcgI CGANNNNNNTGC 2 cut(s) 242, 276
BfaI CTAG 2 cut(s) 161, 282
BfuAI ACCTGC 1 cut(s) 184
BisI GCNGC 3 cut(s) 85, 264, 267
BlsI GCNGC 3 cut(s) 86, 265, 268
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 59
BseGI GGATG 2 cut(s) 52, 201
BseRI GAGGAG 1 cut(s) 214
BseSI GKGCMC 1 cut(s) 76
BseXI GCAGC 3 cut(s) 96, 275, 278
BseYI CCCAGC 1 cut(s) 7
BsiHKAI GWGCWC 1 cut(s) 140
BsmI GAATGC 1 cut(s) 238
Bsp1286I GDGCHC 2 cut(s) 76, 140
Bsp143I GATC 2 cut(s) 11, 142
BspMI ACCTGC 1 cut(s) 184
BspPI GGATC 1 cut(s) 19
BspQI GCTCTTC 1 cut(s) 249
BssMI GATC 2 cut(s) 11, 142
BssSI CACGAG 1 cut(s) 75
Bst2BI CACGAG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 118
Bst6I CTCTTC 1 cut(s) 249
BstC8I GCNNGC 1 cut(s) 261
BstF5I GGATG 2 cut(s) 52, 201
BstKTI GATC 2 cut(s) 14, 145
BstMBI GATC 2 cut(s) 11, 142
BstNSI RCATGY 1 cut(s) 296
BstSLI GKGCMC 1 cut(s) 76
BstV1I GCAGC 3 cut(s) 96, 275, 278
BtsCI GGATG 2 cut(s) 52, 201
BveI ACCTGC 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 261
CaiI CAGNNNCTG 1 cut(s) 269
Cfr13I GGNCC 1 cut(s) 59
CviAII CATG 1 cut(s) 293
CviJI RGCY 6 cut(s) 7, 87, 160, 187, 259, 269
CviKI_1 RGCY 6 cut(s) 7, 87, 160, 187, 259, 269
DpnI GATC 2 cut(s) 13, 144
DpnII GATC 2 cut(s) 11, 142
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 59
FaeI CATG 1 cut(s) 296
FaiI YATR 2 cut(s) 92, 294
FatI CATG 1 cut(s) 292
Fnu4HI GCNGC 3 cut(s) 85, 264, 267
FokI GGATG 2 cut(s) 59, 208
Fsp4HI GCNGC 3 cut(s) 85, 264, 267
FspBI CTAG 2 cut(s) 161, 282
GluI GCNGC 3 cut(s) 85, 264, 267
GsaI CCCAGC 1 cut(s) 11
Hin1II CATG 1 cut(s) 296
HphI GGTGA 2 cut(s) 93, 165
Hpy166II GTNNAC 1 cut(s) 114
Hpy188I TCNGA 2 cut(s) 19, 142
Hpy188III TCNNGA 3 cut(s) 65, 122, 149
Hpy8I GTNNAC 1 cut(s) 114
HpyAV CCTTC 2 cut(s) 146, 205
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4V TGCA 1 cut(s) 263
Hsp92II CATG 1 cut(s) 296
Kzo9I GATC 2 cut(s) 11, 142
LguI GCTCTTC 1 cut(s) 249
LpnPI CCDG 3 cut(s) 50, 107, 189
Lsp1109I GCAGC 3 cut(s) 96, 275, 278
MaeI CTAG 2 cut(s) 161, 282
MaeIII GTNAC 1 cut(s) 30
MalI GATC 2 cut(s) 13, 144
MboI GATC 2 cut(s) 11, 142
MboII GAAGA 3 cut(s) 137, 162, 266
MhlI GDGCHC 2 cut(s) 76, 140
MnlI CCTC 4 cut(s) 13, 72, 192, 268
MroXI GAANNNNTTC 1 cut(s) 169
MspA1I CMGCKG 2 cut(s) 187, 269
Mva1269I GAATGC 1 cut(s) 238
NdeII GATC 2 cut(s) 11, 142
NlaIII CATG 1 cut(s) 296
NspI RCATGY 1 cut(s) 296
PaqCI CACCTGC 1 cut(s) 184
PciSI GCTCTTC 1 cut(s) 249
PctI GAATGC 1 cut(s) 238
PdmI GAANNNNTTC 1 cut(s) 169
PkrI GCNGC 3 cut(s) 86, 265, 268
PspFI CCCAGC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 59
PstNI CAGNNNCTG 1 cut(s) 269
PvuII CAGCTG 2 cut(s) 187, 269
SapI GCTCTTC 1 cut(s) 249
SatI GCNGC 3 cut(s) 85, 264, 267
Sau3AI GATC 2 cut(s) 11, 142
Sau96I GGNCC 1 cut(s) 59
SduI GDGCHC 2 cut(s) 76, 140
SetI ASST 7 cut(s) 89, 162, 178, 189, 261, 271, 279
SinI GGWCC 1 cut(s) 59
SspMI CTAG 2 cut(s) 161, 282
TaaI ACNGT 1 cut(s) 118
TaqI TCGA 2 cut(s) 252, 289
TseI GCWGC 3 cut(s) 84, 263, 266
TspDTI ATGAA 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 59
XceI RCATGY 1 cut(s) 296
XmnI GAANNNNTTC 1 cut(s) 169
XspI CTAG 2 cut(s) 161, 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.