RLG00000001374

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0020604
Physical Location & Seq
Forward (+)
14823264 .. 14826386
3123 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001374

Sequence Viewer

Length: 576 bp
ATGCCAACAGAAGCTGATGGTCCTGTTTGGGGAGCGCTGCTTAATGCTTGTAAAATCTATGGGAATGAGGAGATGGTTGAGAGGATCAGAGAAGGCCTCCGCAATACTGCAGGAGTGAGCACACTGGAGCTTATGCTCTGTTATCAAATGCTTATGCTAAACAGTATAGGTGGGATGATTCTAATAAGGTTTGGAGGTGGGAGGAAACAAGGTTTAAGATCTGCCCATTGTTCTCTTGCAAGTTTCAAGACTAGTTTCCGTTTAGTTGACATAAGAACTCAACATGCATTCAAGGTGCTAGACGAATATCAGAAAATATTTAGTCCTCTGGAATGGGCACGAGATGGCAGATTTATGAGTTTTTCACCACAGAAGTTCACGGTTCTGGATAGTGTTGAGTGCTCTGATCTTCTTGAAGGAAAGCCAGGAAATTCTTCACCTGCATCACAGCTGATGGGGATGCGGAGAATGGCGAAGGAGAAAGCAAGAATGAAGAATGCTGTCAATGGGGCAGTCGAAGAGCTTGCAGCAGCTCACGAGGTTGCTAGTAATCAACATGCCTATTTGATTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

192

Amino Acids

21.16

Weight (kDa)

8.7

Isoelectric Point (pI)

36.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020604)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0232561
rosa_laevigata RLG00000001324 RLG00000001374
rosa_samantha Rh7AG429500 Rh7CG448400 Rh7DG419300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 448
Acc36I ACCTGC 1 cut(s) 448
AciI CCGC 2 cut(s) 100, 463
AclWI GGATC 1 cut(s) 92
AcsI RAATTY 1 cut(s) 430
AfeI AGCGCT 1 cut(s) 36
AfiI CCNNNNNNNGG 1 cut(s) 29
AgsI TTSAA 3 cut(s) 247, 292, 416
AhlI ACTAGT 1 cut(s) 251
AjnI CCWGG 1 cut(s) 424
AluBI AGCT 5 cut(s) 14, 130, 451, 523, 533
AluI AGCT 5 cut(s) 14, 130, 451, 523, 533
Alw21I GWGCWC 2 cut(s) 122, 404
AlwI GGATC 1 cut(s) 92
AlwNI CAGNNNCTG 1 cut(s) 14
Aor51HI AGCGCT 1 cut(s) 36
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 3 cut(s) 37, 527, 530
ApoI RAATTY 1 cut(s) 430
Asp700I GAANNNNTTC 1 cut(s) 433
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 20
AsuHPI GGTGA 2 cut(s) 357, 429
AvaII GGWCC 1 cut(s) 20
BaeGI GKGCMC 1 cut(s) 340
BauI CACGAG 2 cut(s) 339, 536
Bbv12I GWGCWC 2 cut(s) 122, 404
BbvI GCAGC 3 cut(s) 24, 539, 542
BccI CCATC 4 cut(s) 11, 67, 338, 448
BcgI CGANNNNNNTGC 2 cut(s) 506, 540
BciT130I CCWGG 1 cut(s) 426
BcuI ACTAGT 1 cut(s) 251
BfaI CTAG 3 cut(s) 252, 299, 546
BfmI CTRYAG 1 cut(s) 108
BfoI RGCGCY 1 cut(s) 38
BfuAI ACCTGC 1 cut(s) 448
BglII AGATCT 1 cut(s) 218
BisI GCNGC 3 cut(s) 38, 528, 531
BlsI GCNGC 3 cut(s) 39, 529, 532
Bme1390I CCNGG 1 cut(s) 426
Bme18I GGWCC 1 cut(s) 20
BmgT120I GGNCC 1 cut(s) 20
BmrFI CCNGG 1 cut(s) 426
BmsI GCATC 2 cut(s) 450, 452
BplI GAGNNNNNCTC 2 cut(s) 81, 113
BpmI CTGGAG 1 cut(s) 146
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 129
BseBI CCWGG 1 cut(s) 426
BseGI GGATG 2 cut(s) 180, 465
BseLI CCNNNNNNNGG 1 cut(s) 29
BseNI ACTGG 1 cut(s) 129
BseRI GAGGAG 1 cut(s) 83
BseSI GKGCMC 1 cut(s) 340
BseXI GCAGC 3 cut(s) 24, 539, 542
BshFI GGCC 1 cut(s) 96
BsiHKAI GWGCWC 2 cut(s) 122, 404
BslI CCNNNNNNNGG 1 cut(s) 29
BsmI GAATGC 2 cut(s) 287, 502
BsnI GGCC 1 cut(s) 96
Bsp1286I GDGCHC 3 cut(s) 122, 340, 404
Bsp143I GATC 3 cut(s) 84, 218, 406
BspACI CCGC 2 cut(s) 100, 463
BspANI GGCC 1 cut(s) 96
BspMAI CTGCAG 1 cut(s) 112
BspMI ACCTGC 1 cut(s) 448
BspPI GGATC 1 cut(s) 92
BspQI GCTCTTC 1 cut(s) 513
BsrI ACTGG 1 cut(s) 129
BssMI GATC 3 cut(s) 84, 218, 406
BssSI CACGAG 2 cut(s) 339, 536
Bst2BI CACGAG 2 cut(s) 339, 536
Bst2UI CCWGG 1 cut(s) 426
Bst4CI ACNGT 2 cut(s) 164, 382
Bst6I CTCTTC 1 cut(s) 513
BstC8I GCNNGC 1 cut(s) 525
BstF5I GGATG 2 cut(s) 180, 465
BstH2I RGCGCY 1 cut(s) 38
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 3 cut(s) 87, 221, 409
BstMBI GATC 3 cut(s) 84, 218, 406
BstNI CCWGG 1 cut(s) 426
BstNSI RCATGY 2 cut(s) 287, 560
BstSCI CCNGG 1 cut(s) 424
BstSFI CTRYAG 1 cut(s) 108
BstSLI GKGCMC 1 cut(s) 340
BstV1I GCAGC 3 cut(s) 24, 539, 542
BstX2I RGATCY 1 cut(s) 218
BstYI RGATCY 1 cut(s) 218
BsuRI GGCC 1 cut(s) 96
BtsCI GGATG 2 cut(s) 180, 465
BtsIMutI CAGTG 1 cut(s) 122
BveI ACCTGC 1 cut(s) 448
Cac8I GCNNGC 1 cut(s) 525
CaiI CAGNNNCTG 1 cut(s) 14
CfoI GCGC 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 20
CviAII CATG 2 cut(s) 284, 557
CviJI RGCY 7 cut(s) 14, 96, 130, 424, 451, 523, 533
CviKI_1 RGCY 7 cut(s) 14, 96, 130, 424, 451, 523, 533
DpnI GATC 3 cut(s) 86, 220, 408
DpnII GATC 3 cut(s) 84, 218, 406
Eam1104I CTCTTC 1 cut(s) 513
EarI CTCTTC 1 cut(s) 513
Eco147I AGGCCT 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 20
Eco47III AGCGCT 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 424
EcoT22I ATGCAT 1 cut(s) 289
FaeI CATG 2 cut(s) 287, 560
FaiI YATR 8 cut(s) 60, 134, 155, 167, 272, 285, 356, 558
FatI CATG 2 cut(s) 283, 556
Fnu4HI GCNGC 3 cut(s) 38, 528, 531
FokI GGATG 2 cut(s) 187, 472
Fsp4HI GCNGC 3 cut(s) 38, 528, 531
FspBI CTAG 3 cut(s) 252, 299, 546
GlaI GCGC 1 cut(s) 36
GluI GCNGC 3 cut(s) 38, 528, 531
GsuI CTGGAG 1 cut(s) 146
HaeII RGCGCY 1 cut(s) 38
HaeIII GGCC 1 cut(s) 96
HhaI GCGC 1 cut(s) 37
Hin1II CATG 2 cut(s) 287, 560
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 1 cut(s) 178
HphI GGTGA 2 cut(s) 357, 429
Hpy166II GTNNAC 2 cut(s) 268, 378
Hpy188I TCNGA 3 cut(s) 89, 312, 406
Hpy188III TCNNGA 5 cut(s) 247, 329, 386, 413, 536
Hpy8I GTNNAC 2 cut(s) 268, 378
HpyAV CCTTC 3 cut(s) 86, 410, 469
HpyCH4III ACNGT 2 cut(s) 164, 382
HpyCH4V TGCA 5 cut(s) 110, 239, 287, 443, 527
Hsp92II CATG 2 cut(s) 287, 560
HspAI GCGC 1 cut(s) 35
Kzo9I GATC 3 cut(s) 84, 218, 406
LguI GCTCTTC 1 cut(s) 513
LmnI GCTCC 2 cut(s) 32, 127
LpnPI CCDG 8 cut(s) 36, 96, 110, 314, 371, 411, 438, 453
Lsp1109I GCAGC 3 cut(s) 24, 539, 542
LweI GCATC 2 cut(s) 450, 452
MaeI CTAG 3 cut(s) 252, 299, 546
MalI GATC 3 cut(s) 86, 220, 408
MboI GATC 3 cut(s) 84, 218, 406
MboII GAAGA 4 cut(s) 401, 426, 505, 530
MflI RGATCY 1 cut(s) 218
MhlI GDGCHC 3 cut(s) 122, 340, 404
MluCI AATT 1 cut(s) 430
MnlI CCTC 7 cut(s) 61, 75, 107, 188, 195, 336, 532
Mph1103I ATGCAT 1 cut(s) 289
MroXI GAANNNNTTC 1 cut(s) 433
MseI TTAA 2 cut(s) 42, 215
MspA1I CMGCKG 1 cut(s) 451
MspR9I CCNGG 1 cut(s) 426
Mva1269I GAATGC 2 cut(s) 287, 502
MvaI CCWGG 1 cut(s) 426
NdeII GATC 3 cut(s) 84, 218, 406
NlaIII CATG 2 cut(s) 287, 560
NsiI ATGCAT 1 cut(s) 289
NspI RCATGY 2 cut(s) 287, 560
PaqCI CACCTGC 1 cut(s) 448
PceI AGGCCT 1 cut(s) 96
PciSI GCTCTTC 1 cut(s) 513
PctI GAATGC 2 cut(s) 287, 502
PdmI GAANNNNTTC 1 cut(s) 433
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 3 cut(s) 39, 529, 532
Psp6I CCWGG 1 cut(s) 424
PspGI CCWGG 1 cut(s) 424
PspPI GGNCC 1 cut(s) 20
PstI CTGCAG 1 cut(s) 112
PstNI CAGNNNCTG 1 cut(s) 14
PsuI RGATCY 1 cut(s) 218
PvuII CAGCTG 1 cut(s) 451
SapI GCTCTTC 1 cut(s) 513
SaqAI TTAA 2 cut(s) 42, 215
SatI GCNGC 3 cut(s) 38, 528, 531
Sau3AI GATC 3 cut(s) 84, 218, 406
Sau96I GGNCC 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 426
SduI GDGCHC 3 cut(s) 122, 340, 404
SfaNI GCATC 2 cut(s) 450, 452
SfcI CTRYAG 1 cut(s) 108
SinI GGWCC 1 cut(s) 20
SpeI ACTAGT 1 cut(s) 251
Sse9I AATT 1 cut(s) 430
SseBI AGGCCT 1 cut(s) 96
SsiI CCGC 2 cut(s) 100, 463
SspI AATATT 1 cut(s) 318
SspMI CTAG 3 cut(s) 252, 299, 546
StuI AGGCCT 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 424
TaaI ACNGT 2 cut(s) 164, 382
TaqI TCGA 1 cut(s) 516
TasI AATT 1 cut(s) 430
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 2 cut(s) 42, 215
Tru9I TTAA 2 cut(s) 42, 215
TscAI CASTG 1 cut(s) 129
TseI GCWGC 3 cut(s) 37, 527, 530
TspDTI ATGAA 1 cut(s) 506
TspGWI ACGGA 1 cut(s) 248
TspRI CASTG 1 cut(s) 129
VpaK11BI GGWCC 1 cut(s) 20
XapI RAATTY 1 cut(s) 430
XceI RCATGY 2 cut(s) 287, 560
XmnI GAANNNNTTC 1 cut(s) 433
XspI CTAG 3 cut(s) 252, 299, 546
Zsp2I ATGCAT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.