Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0020604

Physical Location & Seq

Genomic Coordinates Reverse (-)

59124676 .. 59127071

Gene Structure 2396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG419300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAACTACTTGATGGAGTTAGGGGACGTCAGAGAATTATTGCCTGCCTGGTTTGGAGGTGGGAGGAAACAAGGTTTAAGATCAGGTGCTAGACGAATATCAGAAAATATTTACTGGGATCATCAGAGGACAGATGGTTACTTTTGGTCTTGGATGATTTCTTTGGTTGGGACTTGGTTTGGTCCTCTGGAATGGGCACGAGATGGCAGATTTATGACTTTTTCACCACAGAAGTTCACGGTTCTGGATAGTGTTAAGTGCTCTGATCTTCTTGAAGGAAAGCTAGGAAATTCTTCACCTGCTTCACAGCTGATGGGGATGAGGAGAATGGCGAAGGAGAAAGCAAGAATGATGAATGCTGTCAATGGGGCAGTGTCGAAGAGCTTGCAGCAGCTCACGAGGTTGCCAGTAATCGACATGCCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

142

Amino Acids

16.21

Weight (kDa)

9.83

Isoelectric Point (pI)

47.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020604)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0232561
rosa_laevigata	RLG00000001324 RLG00000001374
rosa_samantha	Rh7AG429500 Rh7CG448400 Rh7DG419300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	307
AatII	GACGTC	1 cut(s)	30
Acc36I	ACCTGC	1 cut(s)	307
AclWI	GGATC	1 cut(s)	126
AcsI	RAATTY	1 cut(s)	289
AcyI	GRCGYC	1 cut(s)	27
AgsI	TTSAA	1 cut(s)	275
AjnI	CCWGG	1 cut(s)	47
AluBI	AGCT	4 cut(s)	283, 310, 384, 394
AluI	AGCT	4 cut(s)	283, 310, 384, 394
Alw21I	GWGCWC	1 cut(s)	263
AlwI	GGATC	1 cut(s)	126
ApeKI	GCWGC	2 cut(s)	388, 391
ApoI	RAATTY	1 cut(s)	289
Asp700I	GAANNNNTTC	1 cut(s)	292
AspS9I	GGNCC	1 cut(s)	182
AsuHPI	GGTGA	2 cut(s)	216, 288
AvaII	GGWCC	1 cut(s)	182
BaeGI	GKGCMC	1 cut(s)	199
BauI	CACGAG	2 cut(s)	198, 397
Bbv12I	GWGCWC	1 cut(s)	263
BbvI	GCAGC	2 cut(s)	400, 403
BccI	CCATC	4 cut(s)	7, 128, 197, 307
BcgI	CGANNNNNNTGC	2 cut(s)	367, 401
BciT130I	CCWGG	1 cut(s)	49
BfaI	CTAG	2 cut(s)	90, 284
BfuAI	ACCTGC	1 cut(s)	307
BisI	GCNGC	2 cut(s)	389, 392
BlsI	GCNGC	2 cut(s)	390, 393
Bme1390I	CCNGG	1 cut(s)	49
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	182
BmrFI	CCNGG	1 cut(s)	49
BmrI	ACTGGG	1 cut(s)	124
BmuI	ACTGGG	1 cut(s)	124
BsaHI	GRCGYC	1 cut(s)	27
Bse1I	ACTGG	2 cut(s)	119, 407
BseBI	CCWGG	1 cut(s)	49
BseGI	GGATG	2 cut(s)	159, 324
BseNI	ACTGG	2 cut(s)	119, 407
BseRI	GAGGAG	1 cut(s)	337
BseSI	GKGCMC	1 cut(s)	199
BseXI	GCAGC	2 cut(s)	400, 403
BsiHKAI	GWGCWC	1 cut(s)	263
BslFI	GGGAC	2 cut(s)	38, 184
BsmFI	GGGAC	2 cut(s)	38, 184
BsmI	GAATGC	1 cut(s)	361
Bsp1286I	GDGCHC	2 cut(s)	199, 263
Bsp143I	GATC	3 cut(s)	80, 118, 265
BspMI	ACCTGC	1 cut(s)	307
BspPI	GGATC	1 cut(s)	126
BspQI	GCTCTTC	1 cut(s)	374
BsrI	ACTGG	2 cut(s)	119, 407
BssMI	GATC	3 cut(s)	80, 118, 265
BssNI	GRCGYC	1 cut(s)	27
BssSI	CACGAG	2 cut(s)	198, 397
Bst2BI	CACGAG	2 cut(s)	198, 397
Bst2UI	CCWGG	1 cut(s)	49
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	374
BstACI	GRCGYC	1 cut(s)	27
BstC8I	GCNNGC	2 cut(s)	45, 386
BstF5I	GGATG	2 cut(s)	159, 324
BstKTI	GATC	3 cut(s)	83, 121, 268
BstMBI	GATC	3 cut(s)	80, 118, 265
BstNI	CCWGG	1 cut(s)	49
BstNSI	RCATGY	1 cut(s)	421
BstSCI	CCNGG	1 cut(s)	47
BstSLI	GKGCMC	1 cut(s)	199
BstV1I	GCAGC	2 cut(s)	400, 403
BtsCI	GGATG	2 cut(s)	159, 324
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	1 cut(s)	378
BveI	ACCTGC	1 cut(s)	307
Cac8I	GCNNGC	2 cut(s)	45, 386
Cfr13I	GGNCC	1 cut(s)	182
CviAII	CATG	1 cut(s)	418
CviJI	RGCY	4 cut(s)	283, 310, 384, 394
CviKI_1	RGCY	4 cut(s)	283, 310, 384, 394
DpnI	GATC	3 cut(s)	82, 120, 267
DpnII	GATC	3 cut(s)	80, 118, 265
Eam1104I	CTCTTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	47
FaeI	CATG	1 cut(s)	421
FaiI	YATR	2 cut(s)	215, 419
FaqI	GGGAC	2 cut(s)	38, 184
FatI	CATG	1 cut(s)	417
Fnu4HI	GCNGC	2 cut(s)	389, 392
FokI	GGATG	2 cut(s)	166, 331
Fsp4HI	GCNGC	2 cut(s)	389, 392
FspBI	CTAG	2 cut(s)	90, 284
GluI	GCNGC	2 cut(s)	389, 392
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	1 cut(s)	421
HphI	GGTGA	2 cut(s)	216, 288
Hpy166II	GTNNAC	1 cut(s)	237
Hpy188I	TCNGA	4 cut(s)	32, 103, 126, 265
Hpy188III	TCNNGA	4 cut(s)	188, 245, 272, 397
Hpy8I	GTNNAC	1 cut(s)	237
HpyAV	CCTTC	2 cut(s)	269, 328
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	1 cut(s)	388
HpySE526I	ACGT	1 cut(s)	27
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	1 cut(s)	421
Kzo9I	GATC	3 cut(s)	80, 118, 265
LguI	GCTCTTC	1 cut(s)	374
LpnPI	CCDG	9 cut(s)	34, 57, 61, 69, 100, 173, 230, 312, 420
Lsp1109I	GCAGC	2 cut(s)	400, 403
MaeI	CTAG	2 cut(s)	90, 284
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	3 cut(s)	82, 120, 267
MboI	GATC	3 cut(s)	80, 118, 265
MboII	GAAGA	3 cut(s)	260, 285, 391
MhlI	GDGCHC	2 cut(s)	199, 263
MluCI	AATT	2 cut(s)	35, 289
MnlI	CCTC	6 cut(s)	50, 57, 120, 195, 315, 393
MroXI	GAANNNNTTC	1 cut(s)	292
MseI	TTAA	2 cut(s)	77, 255
MspA1I	CMGCKG	1 cut(s)	310
MspR9I	CCNGG	1 cut(s)	49
Mva1269I	GAATGC	1 cut(s)	361
MvaI	CCWGG	1 cut(s)	49
NdeII	GATC	3 cut(s)	80, 118, 265
NlaIII	CATG	1 cut(s)	421
NspI	RCATGY	1 cut(s)	421
PaqCI	CACCTGC	1 cut(s)	307
PciSI	GCTCTTC	1 cut(s)	374
PctI	GAATGC	1 cut(s)	361
PdmI	GAANNNNTTC	1 cut(s)	292
PkrI	GCNGC	2 cut(s)	390, 393
Psp6I	CCWGG	1 cut(s)	47
PspGI	CCWGG	1 cut(s)	47
PspPI	GGNCC	1 cut(s)	182
PvuII	CAGCTG	1 cut(s)	310
SapI	GCTCTTC	1 cut(s)	374
SaqAI	TTAA	2 cut(s)	77, 255
SatI	GCNGC	2 cut(s)	389, 392
Sau3AI	GATC	3 cut(s)	80, 118, 265
Sau96I	GGNCC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	49
SduI	GDGCHC	2 cut(s)	199, 263
SinI	GGWCC	1 cut(s)	182
Sse9I	AATT	2 cut(s)	35, 289
SspI	AATATT	1 cut(s)	109
SspMI	CTAG	2 cut(s)	90, 284
StyD4I	CCNGG	1 cut(s)	47
TaaI	ACNGT	1 cut(s)	241
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	2 cut(s)	377, 414
TasI	AATT	2 cut(s)	35, 289
Tru1I	TTAA	2 cut(s)	77, 255
Tru9I	TTAA	2 cut(s)	77, 255
TscAI	CASTG	1 cut(s)	378
TseI	GCWGC	2 cut(s)	388, 391
TspDTI	ATGAA	2 cut(s)	17, 368
TspRI	CASTG	1 cut(s)	378
VpaK11BI	GGWCC	1 cut(s)	182
XapI	RAATTY	1 cut(s)	289
XceI	RCATGY	1 cut(s)	421
XmnI	GAANNNNTTC	1 cut(s)	292
XspI	CTAG	2 cut(s)	90, 284
ZraI	GACGTC	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.