RchiOBHm_Chr6g0246031

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0018792
Physical Location & Seq
Reverse (-)
1730074 .. 1730388
315 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 315 bp
ATGGTTGTTCATGCTAAGCACATTATGCAGCTGCGCCGGCATGCAGCGACGTCGTCTAAGAACCAAATAAGGTGCAGCAGTACTACTAGTAATAATGTTGATGATGTGCCGCCGAAAGGTCATTTCGCAATTTATGTAGGGGTAGAAGAAGAGAAGAAGGAGCGGTTTGTGGTTCCTATGTCATACTTGAAGCAACCGATGTTCCAAGACTTGCTGCTCAAGGCTGCCGAGGAGTTTGGTTTTGATCAAATGGGTGGCATTACACTTCCGTGTGGAGTAGAAGACTTTACTCGTCTTACTTCTCGTCTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

104

Amino Acids

11.77

Weight (kDa)

7.83

Isoelectric Point (pI)

49.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 14 - 102 2e-25 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018792)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02260
prunus_persica Prupe.8G158100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0246031
rosa_laevigata RLG00000015276
rosa_multiflora Rmu_sc0002281.1_g000002 Rmu_sc0004042.1_g000003
rosa_roxburghii Rroxscaffold_7G00215020
rosa_rugosa Rorug05G0518600
rosa_wichuraiana Rw6G002710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 53
AccBSI CCGCTC 1 cut(s) 163
AciI CCGC 2 cut(s) 110, 163
AcyI GRCGYC 1 cut(s) 50
AfaI GTAC 1 cut(s) 82
AfiI CCNNNNNNNGG 1 cut(s) 116
AgsI TTSAA 1 cut(s) 190
AhlI ACTAGT 1 cut(s) 86
AleI CACNNNNGTG 1 cut(s) 268
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
ApeKI GCWGC 6 cut(s) 28, 31, 44, 75, 214, 224
AspLEI GCGC 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 288
BbvI GCAGC 6 cut(s) 18, 40, 56, 87, 201, 211
BcgI CGANNNNNNTGC 2 cut(s) 33, 67
BclI TGATCA 1 cut(s) 244
BcuI ACTAGT 1 cut(s) 86
BfaI CTAG 1 cut(s) 87
BisI GCNGC 7 cut(s) 29, 32, 45, 76, 110, 215, 225
BlpI GCTNAGC 1 cut(s) 15
BlsI GCNGC 7 cut(s) 30, 33, 46, 77, 111, 216, 226
BmcAI AGTACT 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 174
BpiI GAAGAC 1 cut(s) 288
Bpu1102I GCTNAGC 1 cut(s) 15
BpuEI CTTGAG 1 cut(s) 203
BsaHI GRCGYC 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 228
Bsc4I CCNNNNNNNGG 1 cut(s) 116
Bse118I RCCGGY 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 228
BseLI CCNNNNNNNGG 1 cut(s) 116
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 6 cut(s) 18, 40, 56, 87, 201, 211
BsgI GTGCAG 1 cut(s) 94
BsiSI CCGG 1 cut(s) 37
BslI CCNNNNNNNGG 1 cut(s) 116
Bsp143I GATC 1 cut(s) 244
Bsp1720I GCTNAGC 1 cut(s) 15
BspACI CCGC 2 cut(s) 110, 163
BspLI GGNNCC 1 cut(s) 174
BsrBI CCGCTC 1 cut(s) 163
BsrFI RCCGGY 1 cut(s) 36
BssAI RCCGGY 1 cut(s) 36
BssECI CCNNGG 1 cut(s) 228
BssMI GATC 1 cut(s) 244
BssNI GRCGYC 1 cut(s) 50
Bst6I CTCTTC 1 cut(s) 144
BstACI GRCGYC 1 cut(s) 50
BstAPI GCANNNNNTGC 1 cut(s) 25
BstC8I GCNNGC 2 cut(s) 38, 42
BstDEI CTNAG 2 cut(s) 15, 57
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 1 cut(s) 247
BstMBI GATC 1 cut(s) 244
BstMWI GCNNNNNNNGC 2 cut(s) 25, 37
BstNSI RCATGY 1 cut(s) 44
BstV1I GCAGC 6 cut(s) 18, 40, 56, 87, 201, 211
BstV2I GAAGAC 1 cut(s) 288
Cac8I GCNNGC 2 cut(s) 38, 42
CfoI GCGC 1 cut(s) 36
Cfr10I RCCGGY 1 cut(s) 36
Csp6I GTAC 1 cut(s) 81
CviAII CATG 2 cut(s) 11, 41
CviJI RGCY 2 cut(s) 31, 224
CviKI_1 RGCY 2 cut(s) 31, 224
CviQI GTAC 1 cut(s) 81
DdeI CTNAG 2 cut(s) 15, 57
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
FaeI CATG 2 cut(s) 14, 44
FaiI YATR 6 cut(s) 12, 26, 42, 135, 179, 184
FatI CATG 2 cut(s) 10, 40
FbaI TGATCA 1 cut(s) 244
Fnu4HI GCNGC 7 cut(s) 29, 32, 45, 76, 110, 215, 225
Fsp4HI GCNGC 7 cut(s) 29, 32, 45, 76, 110, 215, 225
FspBI CTAG 1 cut(s) 87
GlaI GCGC 1 cut(s) 35
GluI GCNGC 7 cut(s) 29, 32, 45, 76, 110, 215, 225
HapII CCGG 1 cut(s) 37
HhaI GCGC 1 cut(s) 36
Hin1I GRCGYC 1 cut(s) 50
Hin1II CATG 2 cut(s) 14, 44
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HpaII CCGG 1 cut(s) 37
Hpy99I CGWCG 2 cut(s) 52, 55
HpyAV CCTTC 1 cut(s) 151
HpyCH4IV ACGT 1 cut(s) 50
HpyCH4V TGCA 3 cut(s) 28, 44, 75
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 37
HpyF3I CTNAG 2 cut(s) 15, 57
HpySE526I ACGT 1 cut(s) 50
Hsp92I GRCGYC 1 cut(s) 50
Hsp92II CATG 2 cut(s) 14, 44
HspAI GCGC 1 cut(s) 34
KroI GCCGGC 1 cut(s) 36
KroNI GCCGGC 1 cut(s) 38
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 1 cut(s) 244
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 1 cut(s) 50
Lsp1109I GCAGC 6 cut(s) 18, 40, 56, 87, 201, 211
MaeI CTAG 1 cut(s) 87
MaeII ACGT 1 cut(s) 50
MalI GATC 1 cut(s) 246
MbiI CCGCTC 1 cut(s) 163
MboI GATC 1 cut(s) 244
MboII GAAGA 4 cut(s) 158, 161, 166, 293
MluCI AATT 2 cut(s) 129, 310
MnlI CCTC 1 cut(s) 223
MroNI GCCGGC 1 cut(s) 36
MseI TTAA 1 cut(s) 313
MslI CAYNNNNRTG 1 cut(s) 268
MspA1I CMGCKG 1 cut(s) 31
MspI CCGG 1 cut(s) 37
MwoI GCNNNNNNNGC 2 cut(s) 25, 37
NaeI GCCGGC 1 cut(s) 38
NdeII GATC 1 cut(s) 244
NgoMIV GCCGGC 1 cut(s) 36
NlaIII CATG 2 cut(s) 14, 44
NlaIV GGNNCC 1 cut(s) 174
NmeAIII GCCGAG 1 cut(s) 253
NspI RCATGY 1 cut(s) 44
OliI CACNNNNGTG 1 cut(s) 268
PaeI GCATGC 1 cut(s) 44
PdiI GCCGGC 1 cut(s) 38
PflFI GACNNNGTC 1 cut(s) 52
PkrI GCNGC 7 cut(s) 30, 33, 46, 77, 111, 216, 226
PspN4I GGNNCC 1 cut(s) 174
PsyI GACNNNGTC 1 cut(s) 52
PvuII CAGCTG 1 cut(s) 31
RsaI GTAC 1 cut(s) 82
RsaNI GTAC 1 cut(s) 81
RseI CAYNNNNRTG 1 cut(s) 268
SaqAI TTAA 1 cut(s) 313
SatI GCNGC 7 cut(s) 29, 32, 45, 76, 110, 215, 225
Sau3AI GATC 1 cut(s) 244
ScaI AGTACT 1 cut(s) 82
SetI ASST 4 cut(s) 33, 53, 74, 121
SmiMI CAYNNNNRTG 1 cut(s) 268
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
SpeI ACTAGT 1 cut(s) 86
SphI GCATGC 1 cut(s) 44
Sse9I AATT 2 cut(s) 129, 310
SsiI CCGC 2 cut(s) 110, 163
SspMI CTAG 1 cut(s) 87
TaiI ACGT 1 cut(s) 53
TasI AATT 2 cut(s) 129, 310
TatI WGTACW 1 cut(s) 80
TauI GCSGC 1 cut(s) 112
Tru1I TTAA 1 cut(s) 313
Tru9I TTAA 1 cut(s) 313
TseI GCWGC 6 cut(s) 28, 31, 44, 75, 214, 224
TspGWI ACGGA 1 cut(s) 258
Tth111I GACNNNGTC 1 cut(s) 52
XceI RCATGY 1 cut(s) 44
XspI CTAG 1 cut(s) 87
ZraI GACGTC 1 cut(s) 51
ZrmI AGTACT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.