Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019953

Physical Location & Seq

Genomic Coordinates Reverse (-)

7459645 .. 7460430

Gene Structure 786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGAAGAAGCCGCACACGCTGGAACAGTGGCTCTCCATGAAATCTGATAGTATCAAATCATTTCAAAGGCTTGTTCGTGAATTGCACCTCTGCGCAATTGGGGAGAAGCTTCCCTTTCAGAGGCTTGTTCATGAAATCGCTCAGGATTTCAAGATGGACCTGCGTTTCCAGAGCCATGCTGTGTTGACGCTACAGAAGGTGGCGGAGGCCTATCTTGTTGGGTTGTTTGAGGATACTAATATGTGCACCATTCATGCCAAGCGAGTCACAATTATGCCCAAGGATTATTCAACGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000785 GO:0000786 GO:0000819 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0007049 GO:0007059 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009566 GO:0009567 GO:0009987 GO:0016043 GO:0019237 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0030154 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0032993 GO:0034508 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044703 GO:0044815 GO:0044877 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048555 GO:0048609 GO:0048856 GO:0048869 GO:0051276 GO:0051382 GO:0051383 GO:0051704 GO:0055046 GO:0065003 GO:0065004 GO:0070925 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:0098687 GO:0098813 GO:0140014 GO:1901363 GO:1903047 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

99

Amino Acids

11.56

Weight (kDa)

8.86

Isoelectric Point (pI)

38.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	35 - 95	2e-21	Core histone H2A/H2B/H3/H4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019953)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0252291 RchiOBHm_Chr6g0297691 RchiOBHm_Chr7g0202341
rosa_laevigata	RLG00000015397
rosa_multiflora	Rmu_sc0006252.1_g000008
rosa_roxburghii	Rroxscaffold_4G00315650
rosa_rugosa	Rorug06G0218200.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	94
Acc36I	ACCTGC	1 cut(s)	168
AciI	CCGC	2 cut(s)	11, 203
AfiI	CCNNNNNNNGG	1 cut(s)	120
AgsI	TTSAA	3 cut(s)	65, 151, 291
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
Alw21I	GWGCWC	1 cut(s)	248
Alw44I	GTGCAC	1 cut(s)	244
AoxI	GGCC	1 cut(s)	207
ApaLI	GTGCAC	1 cut(s)	244
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	1 cut(s)	157
AvaII	GGWCC	1 cut(s)	157
BaeGI	GKGCMC	1 cut(s)	248
Bbv12I	GWGCWC	1 cut(s)	248
BccI	CCATC	1 cut(s)	148
BciVI	GTATCC	1 cut(s)	226
BfaI	CTAG	1 cut(s)	298
BfmI	CTRYAG	1 cut(s)	191
BfuAI	ACCTGC	1 cut(s)	168
BfuI	GTATCC	1 cut(s)	226
BisI	GCNGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	12
Bme18I	GGWCC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	157
Bpu10I	CCTNAGC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	120
BseMII	CTCAG	1 cut(s)	155
BseSI	GKGCMC	1 cut(s)	248
BshFI	GGCC	1 cut(s)	209
BsiHKAI	GWGCWC	1 cut(s)	248
BslI	CCNNNNNNNGG	1 cut(s)	120
BsnI	GGCC	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	248
BspACI	CCGC	2 cut(s)	11, 203
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	1 cut(s)	154
BspHI	TCATGA	1 cut(s)	130
BspMI	ACCTGC	1 cut(s)	168
BssECI	CCNNGG	1 cut(s)	279
BssT1I	CCWWGG	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	27
BstDEI	CTNAG	1 cut(s)	141
BstENI	CCTNNNNNAGG	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	95
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstSFI	CTRYAG	1 cut(s)	191
BstSLI	GKGCMC	1 cut(s)	248
BsuI	GTATCC	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	209
BtsIMutI	CAGTG	1 cut(s)	32
BveI	ACCTGC	1 cut(s)	168
CciI	TCATGA	1 cut(s)	130
CfoI	GCGC	1 cut(s)	95
Cfr13I	GGNCC	1 cut(s)	157
CseI	GACGC	1 cut(s)	196
CviAII	CATG	4 cut(s)	37, 131, 176, 254
CviJI	RGCY	7 cut(s)	10, 31, 70, 109, 124, 174, 209
CviKI_1	RGCY	7 cut(s)	10, 31, 70, 109, 124, 174, 209
DdeI	CTNAG	1 cut(s)	141
EciI	GGCGGA	1 cut(s)	218
Eco130I	CCWWGG	1 cut(s)	279
Eco147I	AGGCCT	1 cut(s)	209
Eco47I	GGWCC	1 cut(s)	157
EcoNI	CCTNNNNNAGG	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	4 cut(s)	40, 134, 179, 257
FaiI	YATR	6 cut(s)	38, 132, 177, 242, 255, 275
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FatI	CATG	4 cut(s)	36, 130, 175, 253
Fnu4HI	GCNGC	1 cut(s)	11
Fsp4HI	GCNGC	1 cut(s)	11
FspBI	CTAG	1 cut(s)	298
FspI	TGCGCA	1 cut(s)	94
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	209
HgaI	GACGC	1 cut(s)	196
HhaI	GCGC	1 cut(s)	95
Hin1II	CATG	4 cut(s)	40, 134, 179, 257
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	1 cut(s)	264
Hpy166II	GTNNAC	2 cut(s)	186, 246
Hpy188I	TCNGA	2 cut(s)	46, 120
Hpy188III	TCNNGA	5 cut(s)	77, 131, 143, 151, 169
Hpy8I	GTNNAC	2 cut(s)	186, 246
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	1 cut(s)	27
HpyCH4IV	ACGT	1 cut(s)	293
HpyCH4V	TGCA	2 cut(s)	85, 246
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	1 cut(s)	293
Hsp92II	CATG	4 cut(s)	40, 134, 179, 257
HspAI	GCGC	1 cut(s)	93
LpnPI	CCDG	4 cut(s)	5, 128, 173, 182
MaeI	CTAG	1 cut(s)	298
MaeII	ACGT	1 cut(s)	293
MaeIII	GTNAC	1 cut(s)	265
MboII	GAAGA	1 cut(s)	16
MfeI	CAATTG	1 cut(s)	96
MhlI	GDGCHC	1 cut(s)	248
MluCI	AATT	3 cut(s)	80, 96, 270
MlyI	GAGTC	1 cut(s)	273
MnlI	CCTC	4 cut(s)	98, 114, 199, 223
MslI	CAYNNNNRTG	1 cut(s)	272
MunI	CAATTG	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	16
NlaIII	CATG	4 cut(s)	40, 134, 179, 257
NmuCI	GTSAC	1 cut(s)	265
NsbI	TGCGCA	1 cut(s)	94
PagI	TCATGA	1 cut(s)	130
PceI	AGGCCT	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	12
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
PspPI	GGNCC	1 cut(s)	157
RseI	CAYNNNNRTG	1 cut(s)	272
SatI	GCNGC	1 cut(s)	11
Sau96I	GGNCC	1 cut(s)	157
SchI	GAGTC	1 cut(s)	273
SduI	GDGCHC	1 cut(s)	248
SetI	ASST	5 cut(s)	90, 111, 162, 201, 296
SfcI	CTRYAG	1 cut(s)	191
SinI	GGWCC	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	272
Sse9I	AATT	3 cut(s)	80, 96, 270
SseBI	AGGCCT	1 cut(s)	209
SsiI	CCGC	2 cut(s)	11, 203
SspMI	CTAG	1 cut(s)	298
StuI	AGGCCT	1 cut(s)	209
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	27
TaiI	ACGT	1 cut(s)	296
TasI	AATT	3 cut(s)	80, 96, 270
TauI	GCSGC	1 cut(s)	13
TscAI	CASTG	1 cut(s)	32
TseFI	GTSAC	1 cut(s)	265
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	5 cut(s)	17, 53, 119, 147, 242
TspRI	CASTG	1 cut(s)	32
VneI	GTGCAC	1 cut(s)	244
VpaK11BI	GGWCC	1 cut(s)	157
XagI	CCTNNNNNAGG	1 cut(s)	118
XspI	CTAG	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.