Rroxscaffold_4G00315650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0019953
Physical Location & Seq
Forward (+)
40093395 .. 40098235
4841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00315650.1

Sequence Viewer

Length: 702 bp
ATGATTGACGGTGAAAACCAAGCAGGCAGGGAGGGCCATGAGCCAGCCAGCCAGGGGAGACACTTCACGTGGAAAGATTCAATGGTGATAACGGGGTTGGTTTTGGTATTTGGTGGTGATCATGCAACTCCGAAGTTAGTGTACACCAGAGAGGAAAGAAGACAAACCTCAGTCATACAAATTGAACACACAACTCATGTAACTGGTCAATTTGGAACCGCGACTTCTTCGACTTCCTCGCCGCCGTCGAACTCACTCCTCCGCCACCTTCTTCACACCTCGAAAAACATTGTCTCCGTCGGAGATCACGACGCCGGGACGAGCCTCTTTCGCCTCGATTCCACCGCAGCCCACGGAGAACGGTCATCTTCGGCGAGATTCGGGTCCAATTTCGGGGTATTTCGAAGCGGGGAGAGAGGGTTCTTGTTCGGCCTAGTCTCTCCATGTCCGGTCGGCTTGACGTGGGCTAGTGGCTTGGCTCGGCTCGGAGAATCTGTTCGCGGTCGACCCGTCGTGATTGTGCCGGTGATGGCTTCTTCGCACACAAGTCAAACTGCACAAATAGCCTCGGTGTCTCACCTTCCAACTCGTTTTGTTCAATACTATGCTCGAATCTCTCTTCGATCTTCCTTCTCCAAAATTGGGAATTTGACGCAGAAGAGCAAACGCAGTACAGGTCATTTTCCAAAGAGAAGAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

25.36

Weight (kDa)

11.0

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019953)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0252291 RchiOBHm_Chr6g0297691 RchiOBHm_Chr7g0202341
rosa_laevigata RLG00000015397
rosa_multiflora Rmu_sc0006252.1_g000008
rosa_roxburghii Rroxscaffold_4G00315650
rosa_rugosa Rorug06G0218200.1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 505
AccII CGCG 2 cut(s) 221, 501
AciI CCGC 6 cut(s) 219, 242, 262, 345, 408, 501
AcsI RAATTY 1 cut(s) 646
AcvI CACGTG 1 cut(s) 69
AcyI GRCGYC 1 cut(s) 312
AfaI GTAC 2 cut(s) 143, 673
AfiI CCNNNNNNNGG 3 cut(s) 54, 393, 642
AgsI TTSAA 3 cut(s) 81, 185, 599
AjiI CACGTC 1 cut(s) 462
AjnI CCWGG 1 cut(s) 51
AloI GAACNNNNNNTCC 4 cut(s) 404, 436, 480, 512
Alw26I GTCTC 4 cut(s) 52, 298, 442, 579
AoxI GGCC 2 cut(s) 34, 430
ApeKI GCWGC 1 cut(s) 347
ApoI RAATTY 1 cut(s) 646
Asp700I GAANNNNTTC 1 cut(s) 495
AspS9I GGNCC 2 cut(s) 34, 384
AsuC2I CCSGG 1 cut(s) 316
AsuHPI GGTGA 5 cut(s) 23, 97, 128, 538, 569
AsuII TTCGAA 1 cut(s) 403
AvaII GGWCC 1 cut(s) 384
BarI GAAGNNNNNNTAC 2 cut(s) 125, 157
BbrPI CACGTG 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 166
BbvI GCAGC 1 cut(s) 359
BccI CCATC 1 cut(s) 523
BceAI ACGGC 1 cut(s) 229
BciT130I CCWGG 1 cut(s) 53
BclI TGATCA 1 cut(s) 118
BcnI CCSGG 1 cut(s) 316
BcoDI GTCTC 4 cut(s) 52, 298, 442, 579
BfaI CTAG 2 cut(s) 434, 468
BisI GCNGC 2 cut(s) 242, 348
BlsI GCNGC 2 cut(s) 243, 349
Bme1390I CCNGG 2 cut(s) 53, 316
Bme18I GGWCC 1 cut(s) 384
BmgBI CACGTC 1 cut(s) 462
BmgT120I GGNCC 2 cut(s) 34, 384
BmiI GGNNCC 2 cut(s) 217, 385
BmrFI CCNGG 2 cut(s) 53, 316
BpiI GAAGAC 1 cut(s) 166
Bpu14I TTCGAA 1 cut(s) 403
BpuMI CCSGG 1 cut(s) 316
BsaAI YACGTR 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 312
BsaJI CCNNGG 3 cut(s) 52, 352, 567
BsaWI WCCGGW 1 cut(s) 448
BsaXI ACNNNNNCTCC 6 cut(s) 278, 308, 404, 434, 480, 510
Bsc4I CCNNNNNNNGG 3 cut(s) 54, 393, 642
Bse118I RCCGGY 1 cut(s) 523
Bse1I ACTGG 1 cut(s) 208
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 3 cut(s) 52, 352, 567
BseLI CCNNNNNNNGG 3 cut(s) 54, 393, 642
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 1 cut(s) 208
BseRI GAGGAG 1 cut(s) 248
BseXI GCAGC 1 cut(s) 359
BsgI GTGCAG 1 cut(s) 540
Bsh1236I CGCG 2 cut(s) 221, 501
Bsh1285I CGRYCG 2 cut(s) 453, 505
BshFI GGCC 2 cut(s) 36, 432
BsiEI CGRYCG 2 cut(s) 453, 505
BsiSI CCGG 3 cut(s) 315, 449, 524
BslFI GGGAC 1 cut(s) 331
BslI CCNNNNNNNGG 3 cut(s) 54, 393, 642
BsmAI GTCTC 4 cut(s) 52, 298, 442, 579
BsmFI GGGAC 1 cut(s) 331
BsnI GGCC 2 cut(s) 36, 432
Bsp119I TTCGAA 1 cut(s) 403
Bsp1407I TGTACA 1 cut(s) 141
Bsp143I GATC 3 cut(s) 118, 304, 623
BspACI CCGC 6 cut(s) 219, 242, 262, 345, 408, 501
BspANI GGCC 2 cut(s) 36, 432
BspCNI CTCAG 1 cut(s) 182
BspFNI CGCG 2 cut(s) 221, 501
BspLI GGNNCC 2 cut(s) 217, 385
BspQI GCTCTTC 1 cut(s) 653
BspT104I TTCGAA 1 cut(s) 403
BsrFI RCCGGY 1 cut(s) 523
BsrGI TGTACA 1 cut(s) 141
BsrI ACTGG 1 cut(s) 208
BssAI RCCGGY 1 cut(s) 523
BssECI CCNNGG 3 cut(s) 52, 352, 567
BssMI GATC 3 cut(s) 118, 304, 623
BssNI GRCGYC 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 2 cut(s) 11, 363
Bst6I CTCTTC 2 cut(s) 624, 653
BstACI GRCGYC 1 cut(s) 312
BstAUI TGTACA 1 cut(s) 141
BstBAI YACGTR 1 cut(s) 69
BstBI TTCGAA 1 cut(s) 403
BstC8I GCNNGC 3 cut(s) 25, 45, 49
BstDEI CTNAG 1 cut(s) 169
BstDSI CCRYGG 1 cut(s) 352
BstFNI CGCG 2 cut(s) 221, 501
BstKTI GATC 3 cut(s) 121, 307, 626
BstMAI GTCTC 4 cut(s) 52, 298, 442, 579
BstMBI GATC 3 cut(s) 118, 304, 623
BstMCI CGRYCG 2 cut(s) 453, 505
BstMWI GCNNNNNNNGC 3 cut(s) 33, 330, 563
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 2 cut(s) 51, 314
BstUI CGCG 2 cut(s) 221, 501
BstV1I GCAGC 1 cut(s) 359
BstV2I GAAGAC 1 cut(s) 166
BsuRI GGCC 2 cut(s) 36, 432
BtgI CCRYGG 1 cut(s) 352
BtrI CACGTC 1 cut(s) 462
Cac8I GCNNGC 3 cut(s) 25, 45, 49
Cfr10I RCCGGY 1 cut(s) 523
Cfr13I GGNCC 2 cut(s) 34, 384
CseI GACGC 2 cut(s) 320, 661
Csp6I GTAC 2 cut(s) 142, 672
CviAII CATG 4 cut(s) 38, 122, 197, 444
CviQI GTAC 2 cut(s) 142, 672
DdeI CTNAG 1 cut(s) 169
DpnI GATC 3 cut(s) 120, 306, 625
DpnII GATC 3 cut(s) 118, 304, 623
Eam1104I CTCTTC 2 cut(s) 624, 653
EarI CTCTTC 2 cut(s) 624, 653
EciI GGCGGA 1 cut(s) 251
Eco47I GGWCC 1 cut(s) 384
Eco72I CACGTG 1 cut(s) 69
EcoRII CCWGG 1 cut(s) 51
FaeI CATG 4 cut(s) 41, 125, 200, 447
FaiI YATR 6 cut(s) 39, 123, 176, 198, 445, 606
FaqI GGGAC 1 cut(s) 331
FatI CATG 4 cut(s) 37, 121, 196, 443
FauI CCCGC 1 cut(s) 401
FbaI TGATCA 1 cut(s) 118
FblI GTMKAC 1 cut(s) 505
Fnu4HI GCNGC 2 cut(s) 242, 348
Fsp4HI GCNGC 2 cut(s) 242, 348
FspBI CTAG 2 cut(s) 434, 468
GluI GCNGC 2 cut(s) 242, 348
HaeIII GGCC 2 cut(s) 36, 432
HapII CCGG 3 cut(s) 315, 449, 524
HgaI GACGC 2 cut(s) 320, 661
Hin1I GRCGYC 1 cut(s) 312
Hin1II CATG 4 cut(s) 41, 125, 200, 447
HincII GTYRAC 1 cut(s) 506
HindII GTYRAC 1 cut(s) 506
HinfI GANTC 5 cut(s) 77, 338, 378, 491, 612
HpaII CCGG 3 cut(s) 315, 449, 524
HphI GGTGA 5 cut(s) 23, 97, 128, 538, 569
Hpy166II GTNNAC 3 cut(s) 142, 144, 506
Hpy188I TCNGA 3 cut(s) 132, 302, 488
Hpy188III TCNNGA 2 cut(s) 308, 514
Hpy8I GTNNAC 3 cut(s) 142, 144, 506
Hpy99I CGWCG 4 cut(s) 250, 302, 314, 515
HpyAV CCTTC 3 cut(s) 278, 590, 640
HpyCH4III ACNGT 2 cut(s) 11, 363
HpyCH4IV ACGT 2 cut(s) 68, 461
HpyCH4V TGCA 2 cut(s) 125, 557
HpyF10VI GCNNNNNNNGC 3 cut(s) 33, 330, 563
HpyF3I CTNAG 1 cut(s) 169
HpySE526I ACGT 2 cut(s) 68, 461
Hsp92I GRCGYC 1 cut(s) 312
Hsp92II CATG 4 cut(s) 41, 125, 200, 447
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 3 cut(s) 118, 304, 623
LguI GCTCTTC 1 cut(s) 653
Lsp1109I GCAGC 1 cut(s) 359
MaeI CTAG 2 cut(s) 434, 468
MaeII ACGT 2 cut(s) 68, 461
MaeIII GTNAC 1 cut(s) 199
MalI GATC 3 cut(s) 120, 306, 625
MboI GATC 3 cut(s) 118, 304, 623
MboII GAAGA 8 cut(s) 171, 219, 263, 360, 528, 611, 618, 670
MluCI AATT 5 cut(s) 180, 209, 388, 639, 646
MmeI TCCRAC 2 cut(s) 280, 608
MroXI GAANNNNTTC 1 cut(s) 495
MspI CCGG 3 cut(s) 315, 449, 524
MspR9I CCNGG 2 cut(s) 53, 316
MvaI CCWGG 1 cut(s) 53
MvnI CGCG 2 cut(s) 221, 501
MwoI GCNNNNNNNGC 3 cut(s) 33, 330, 563
NciI CCSGG 1 cut(s) 316
NdeII GATC 3 cut(s) 118, 304, 623
NlaIII CATG 4 cut(s) 41, 125, 200, 447
NlaIV GGNNCC 2 cut(s) 217, 385
NmeAIII GCCGAG 1 cut(s) 460
NspV TTCGAA 1 cut(s) 403
PciSI GCTCTTC 1 cut(s) 653
PcsI WCGNNNNNNNCGW 2 cut(s) 245, 306
PdmI GAANNNNTTC 1 cut(s) 495
PfeI GAWTC 5 cut(s) 77, 338, 378, 491, 612
PkrI GCNGC 2 cut(s) 243, 349
PmaCI CACGTG 1 cut(s) 69
PmlI CACGTG 1 cut(s) 69
Ppu21I YACGTR 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 51
PspCI CACGTG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 2 cut(s) 217, 385
PspPI GGNCC 2 cut(s) 34, 384
RsaI GTAC 2 cut(s) 143, 673
RsaNI GTAC 2 cut(s) 142, 672
SalI GTCGAC 1 cut(s) 504
SapI GCTCTTC 1 cut(s) 653
SatI GCNGC 2 cut(s) 242, 348
Sau3AI GATC 3 cut(s) 118, 304, 623
Sau96I GGNCC 2 cut(s) 34, 384
ScrFI CCNGG 2 cut(s) 53, 316
SetI ASST 7 cut(s) 71, 170, 270, 281, 464, 582, 679
SfuI TTCGAA 1 cut(s) 403
SinI GGWCC 1 cut(s) 384
Sse9I AATT 5 cut(s) 180, 209, 388, 639, 646
SsiI CCGC 6 cut(s) 219, 242, 262, 345, 408, 501
SspMI CTAG 2 cut(s) 434, 468
StyD4I CCNGG 2 cut(s) 51, 314
TaaI ACNGT 2 cut(s) 11, 363
TaiI ACGT 2 cut(s) 71, 464
TaqI TCGA 8 cut(s) 230, 248, 281, 336, 403, 505, 610, 622
TasI AATT 5 cut(s) 180, 209, 388, 639, 646
TatI WGTACW 2 cut(s) 141, 671
TauI GCSGC 1 cut(s) 244
TfiI GAWTC 5 cut(s) 77, 338, 378, 491, 612
TseI GCWGC 1 cut(s) 347
TspGWI ACGGA 2 cut(s) 286, 369
VpaK11BI GGWCC 1 cut(s) 384
XapI RAATTY 1 cut(s) 646
XmiI GTMKAC 1 cut(s) 505
XmnI GAANNNNTTC 1 cut(s) 495
XspI CTAG 2 cut(s) 434, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.