RLG00000015397

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0019953
Physical Location & Seq
Forward (+)
65529128 .. 65530205
1078 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015397

Sequence Viewer

Length: 606 bp
ATGAAATCACTCAGGATTTCAAGATGGACCTGCGTTTCCAGAGCCATGCCGTGTTGGCGCTACAGAAGGTGGTGGAGGCCTATCTTGTTGGGTTGTTTGAGGATACTAATATGTGCACCATTCATGCCAAGCAAGTCACAATTATGCCCAAGGATTATTCAACGTGCTAGGAGAATCAGCCGAACACCCTCCTCCGCCGCCTTCTCCACACCTCGAAAAACATTGTCTCAATCGGAGATCACGGCGCCAGGAACAAGCCTTTTTCGCCTCGATTCCACTGTAGCGCACATGAGAACTGTCATCTCCGACGAGATTCGGGTCCGATTTCAGGGAATTTGGAAGCGGGGATCCCCGGGTTGGGTCCACTCGAGTGAGGGTTCTTGTTTGGCCCAGTCTCTCTATGTCCGGCCAGCTCGACTGTGGTTTAGTGGTGTGGCTCAGTTTCGAGAATCTATTCGCAGTCGACCTGTCGTGATTGTGCCGATGATGACTTATTCTGCACACACAAGTCAAACAGTACAAATGGCCTCAGTGTCTCACCTTCCAACTCGTTTTGTTCAATACTCTGCTCTGAATCTCCCTTCTCGAAAATGGGGAGTGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000786 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0032991 GO:0032993 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044815
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

23.03

Weight (kDa)

11.74

Isoelectric Point (pI)

67.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019953)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0252291 RchiOBHm_Chr6g0297691 RchiOBHm_Chr7g0202341
rosa_laevigata RLG00000015397
rosa_multiflora Rmu_sc0006252.1_g000008
rosa_roxburghii Rroxscaffold_4G00315650
rosa_rugosa Rorug06G0218200.1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 38
AccB1I GGYRCC 1 cut(s) 244
AccI GTMKAC 1 cut(s) 463
AciI CCGC 3 cut(s) 195, 198, 343
AclWI GGATC 2 cut(s) 342, 355
AcoI YGGCCR 1 cut(s) 407
AcsI RAATTY 1 cut(s) 333
AcyI GRCGYC 1 cut(s) 245
AfaI GTAC 1 cut(s) 519
AfiI CCNNNNNNNGG 3 cut(s) 328, 357, 358
AgsI TTSAA 3 cut(s) 21, 161, 560
AjnI CCWGG 1 cut(s) 247
AleI CACNNNNGTG 1 cut(s) 369
AluBI AGCT 1 cut(s) 413
AluI AGCT 1 cut(s) 413
Alw21I GWGCWC 1 cut(s) 118
Alw26I GTCTC 3 cut(s) 231, 399, 540
Alw44I GTGCAC 1 cut(s) 114
AlwI GGATC 2 cut(s) 342, 355
Ama87I CYCGRG 2 cut(s) 352, 367
AoxI GGCC 4 cut(s) 77, 387, 407, 525
ApaLI GTGCAC 1 cut(s) 114
ApoI RAATTY 1 cut(s) 333
Asp700I GAANNNNTTC 1 cut(s) 453
AspLEI GCGC 3 cut(s) 60, 247, 286
AspS9I GGNCC 4 cut(s) 27, 319, 361, 388
AsuC2I CCSGG 2 cut(s) 353, 354
AsuHPI GGTGA 1 cut(s) 530
AvaI CYCGRG 2 cut(s) 352, 367
AvaII GGWCC 3 cut(s) 27, 319, 361
BaeGI GKGCMC 1 cut(s) 118
BamHI GGATCC 1 cut(s) 347
BanI GGYRCC 1 cut(s) 244
Bbv12I GWGCWC 1 cut(s) 118
BccI CCATC 1 cut(s) 18
BceAI ACGGC 2 cut(s) 34, 258
BciT130I CCWGG 1 cut(s) 249
BciVI GTATCC 1 cut(s) 96
BcnI CCSGG 2 cut(s) 353, 354
BcoDI GTCTC 3 cut(s) 231, 399, 540
BfaI CTAG 1 cut(s) 168
BfmI CTRYAG 2 cut(s) 61, 279
BfoI RGCGCY 2 cut(s) 61, 248
BfuAI ACCTGC 1 cut(s) 38
BfuI GTATCC 1 cut(s) 96
BglI GCCNNNNNGGC 1 cut(s) 55
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
Bme1390I CCNGG 3 cut(s) 249, 353, 354
Bme18I GGWCC 3 cut(s) 27, 319, 361
BmeT110I CYCGRG 2 cut(s) 352, 367
BmgT120I GGNCC 4 cut(s) 27, 319, 361, 388
BmiI GGNNCC 4 cut(s) 246, 320, 349, 362
BmrFI CCNGG 3 cut(s) 249, 353, 354
BmrI ACTGGG 1 cut(s) 385
BmuI ACTGGG 1 cut(s) 385
BpuMI CCSGG 2 cut(s) 353, 354
BsaHI GRCGYC 1 cut(s) 245
BsaJI CCNNGG 3 cut(s) 149, 351, 352
Bsc4I CCNNNNNNNGG 3 cut(s) 328, 357, 358
Bse1I ACTGG 1 cut(s) 391
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 3 cut(s) 149, 351, 352
BseLI CCNNNNNNNGG 3 cut(s) 328, 357, 358
BseMII CTCAG 3 cut(s) 25, 452, 543
BseNI ACTGG 1 cut(s) 391
BseRI GAGGAG 1 cut(s) 181
BseSI GKGCMC 1 cut(s) 118
BsgI GTGCAG 1 cut(s) 483
BshFI GGCC 4 cut(s) 79, 389, 409, 527
BshNI GGYRCC 1 cut(s) 244
BsiHKAI GWGCWC 1 cut(s) 118
BsiHKCI CYCGRG 2 cut(s) 352, 367
BsiSI CCGG 2 cut(s) 353, 406
BslI CCNNNNNNNGG 3 cut(s) 328, 357, 358
BsmAI GTCTC 3 cut(s) 231, 399, 540
BsnI GGCC 4 cut(s) 79, 389, 409, 527
BsoBI CYCGRG 2 cut(s) 352, 367
Bsp1286I GDGCHC 1 cut(s) 118
Bsp143I GATC 2 cut(s) 237, 347
BspACI CCGC 3 cut(s) 195, 198, 343
BspANI GGCC 4 cut(s) 79, 389, 409, 527
BspCNI CTCAG 3 cut(s) 24, 451, 542
BspLI GGNNCC 4 cut(s) 246, 320, 349, 362
BspMI ACCTGC 1 cut(s) 38
BspPI GGATC 2 cut(s) 342, 355
BspT107I GGYRCC 1 cut(s) 244
BsrI ACTGG 1 cut(s) 391
BssECI CCNNGG 3 cut(s) 149, 351, 352
BssMI GATC 2 cut(s) 237, 347
BssNI GRCGYC 1 cut(s) 245
BssT1I CCWWGG 1 cut(s) 149
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 4 cut(s) 280, 298, 420, 517
BstACI GRCGYC 1 cut(s) 245
BstC8I GCNNGC 1 cut(s) 411
BstDEI CTNAG 3 cut(s) 11, 438, 529
BstH2I RGCGCY 2 cut(s) 61, 248
BstHHI GCGC 3 cut(s) 60, 247, 286
BstKTI GATC 2 cut(s) 240, 350
BstMAI GTCTC 3 cut(s) 231, 399, 540
BstMBI GATC 2 cut(s) 237, 347
BstMWI GCNNNNNNNGC 2 cut(s) 55, 264
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 3 cut(s) 247, 351, 352
BstSFI CTRYAG 2 cut(s) 61, 279
BstSLI GKGCMC 1 cut(s) 118
BstX2I RGATCY 1 cut(s) 347
BstYI RGATCY 1 cut(s) 347
BsuI GTATCC 1 cut(s) 96
BsuRI GGCC 4 cut(s) 79, 389, 409, 527
BtsIMutI CAGTG 2 cut(s) 276, 537
BveI ACCTGC 1 cut(s) 38
Cac8I GCNNGC 1 cut(s) 411
CfoI GCGC 3 cut(s) 60, 247, 286
Cfr13I GGNCC 4 cut(s) 27, 319, 361, 388
Cfr9I CCCGGG 1 cut(s) 352
Csp6I GTAC 1 cut(s) 518
CviAII CATG 3 cut(s) 46, 124, 289
CviJI RGCY 9 cut(s) 44, 79, 180, 258, 389, 409, 413, 437, 527
CviKI_1 RGCY 9 cut(s) 44, 79, 180, 258, 389, 409, 413, 437, 527
CviQI GTAC 1 cut(s) 518
DdeI CTNAG 3 cut(s) 11, 438, 529
DinI GGCGCC 1 cut(s) 246
DpnI GATC 2 cut(s) 239, 349
DpnII GATC 2 cut(s) 237, 347
EaeI YGGCCR 1 cut(s) 407
EciI GGCGGA 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 149
Eco147I AGGCCT 1 cut(s) 79
Eco47I GGWCC 3 cut(s) 27, 319, 361
Eco88I CYCGRG 2 cut(s) 352, 367
EcoRII CCWGG 1 cut(s) 247
EcoT14I CCWWGG 1 cut(s) 149
EgeI GGCGCC 1 cut(s) 246
EheI GGCGCC 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 149
FaeI CATG 3 cut(s) 49, 127, 292
FaiI YATR 6 cut(s) 47, 112, 125, 145, 290, 402
FatI CATG 3 cut(s) 45, 123, 288
FauI CCCGC 1 cut(s) 336
FblI GTMKAC 1 cut(s) 463
Fnu4HI GCNGC 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 1 cut(s) 168
GlaI GCGC 3 cut(s) 59, 246, 285
GluI GCNGC 1 cut(s) 198
HaeII RGCGCY 2 cut(s) 61, 248
HaeIII GGCC 4 cut(s) 79, 389, 409, 527
HapII CCGG 2 cut(s) 353, 406
HhaI GCGC 3 cut(s) 60, 247, 286
Hin1I GRCGYC 1 cut(s) 245
Hin1II CATG 3 cut(s) 49, 127, 292
Hin6I GCGC 3 cut(s) 58, 245, 284
HinP1I GCGC 3 cut(s) 58, 245, 284
HincII GTYRAC 1 cut(s) 464
HindII GTYRAC 1 cut(s) 464
HinfI GANTC 5 cut(s) 174, 272, 313, 449, 574
HpaII CCGG 2 cut(s) 353, 406
HphI GGTGA 1 cut(s) 530
Hpy166II GTNNAC 3 cut(s) 116, 364, 464
Hpy188I TCNGA 4 cut(s) 235, 307, 323, 573
Hpy188III TCNNGA 6 cut(s) 13, 21, 39, 446, 472, 585
Hpy8I GTNNAC 3 cut(s) 116, 364, 464
Hpy99I CGWCG 1 cut(s) 311
HpyAV CCTTC 4 cut(s) 60, 211, 551, 591
HpyCH4III ACNGT 4 cut(s) 280, 298, 420, 517
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 2 cut(s) 116, 500
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 264
HpyF3I CTNAG 3 cut(s) 11, 438, 529
HpySE526I ACGT 1 cut(s) 163
Hsp92I GRCGYC 1 cut(s) 245
Hsp92II CATG 3 cut(s) 49, 127, 292
HspAI GCGC 3 cut(s) 58, 245, 284
KasI GGCGCC 1 cut(s) 244
Kzo9I GATC 2 cut(s) 237, 347
MaeI CTAG 1 cut(s) 168
MaeII ACGT 1 cut(s) 163
MaeIII GTNAC 1 cut(s) 135
MalI GATC 2 cut(s) 239, 349
MboI GATC 2 cut(s) 237, 347
MflI RGATCY 1 cut(s) 347
MhlI GDGCHC 1 cut(s) 118
MluCI AATT 2 cut(s) 140, 333
Mly113I GGCGCC 1 cut(s) 245
MmeI TCCRAC 2 cut(s) 330, 569
MnlI CCTC 8 cut(s) 69, 93, 199, 202, 222, 278, 367, 538
MroXI GAANNNNTTC 1 cut(s) 453
MseI TTAA 1 cut(s) 604
MslI CAYNNNNRTG 2 cut(s) 142, 369
MspI CCGG 2 cut(s) 353, 406
MspR9I CCNGG 3 cut(s) 249, 353, 354
MvaI CCWGG 1 cut(s) 249
MwoI GCNNNNNNNGC 2 cut(s) 55, 264
NarI GGCGCC 1 cut(s) 245
NciI CCSGG 2 cut(s) 353, 354
NdeII GATC 2 cut(s) 237, 347
NlaIII CATG 3 cut(s) 49, 127, 292
NlaIV GGNNCC 4 cut(s) 246, 320, 349, 362
NmuCI GTSAC 1 cut(s) 135
OliI CACNNNNGTG 1 cut(s) 369
PaeR7I CTCGAG 1 cut(s) 367
PceI AGGCCT 1 cut(s) 79
PdmI GAANNNNTTC 1 cut(s) 453
PfeI GAWTC 5 cut(s) 174, 272, 313, 449, 574
PkrI GCNGC 1 cut(s) 199
PluTI GGCGCC 1 cut(s) 248
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 4 cut(s) 246, 320, 349, 362
PspPI GGNCC 4 cut(s) 27, 319, 361, 388
PspXI VCTCGAGB 1 cut(s) 367
PsuI RGATCY 1 cut(s) 347
RsaI GTAC 1 cut(s) 519
RsaNI GTAC 1 cut(s) 518
RseI CAYNNNNRTG 2 cut(s) 142, 369
SalI GTCGAC 1 cut(s) 462
SaqAI TTAA 1 cut(s) 604
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 2 cut(s) 237, 347
Sau96I GGNCC 4 cut(s) 27, 319, 361, 388
ScrFI CCNGG 3 cut(s) 249, 353, 354
SduI GDGCHC 1 cut(s) 118
SetI ASST 7 cut(s) 32, 71, 166, 214, 415, 469, 543
SfcI CTRYAG 2 cut(s) 61, 279
SfoI GGCGCC 1 cut(s) 246
Sfr274I CTCGAG 1 cut(s) 367
SinI GGWCC 3 cut(s) 27, 319, 361
SlaI CTCGAG 1 cut(s) 367
SmaI CCCGGG 1 cut(s) 354
SmiMI CAYNNNNRTG 2 cut(s) 142, 369
SmlI CTYRAG 1 cut(s) 367
SmoI CTYRAG 1 cut(s) 367
Sse9I AATT 2 cut(s) 140, 333
SseBI AGGCCT 1 cut(s) 79
SsiI CCGC 3 cut(s) 195, 198, 343
SspDI GGCGCC 1 cut(s) 244
SspMI CTAG 1 cut(s) 168
StuI AGGCCT 1 cut(s) 79
StyD4I CCNGG 3 cut(s) 247, 351, 352
StyI CCWWGG 1 cut(s) 149
TaaI ACNGT 4 cut(s) 280, 298, 420, 517
TaiI ACGT 1 cut(s) 166
TaqI TCGA 7 cut(s) 214, 270, 368, 415, 445, 463, 586
TasI AATT 2 cut(s) 140, 333
TatI WGTACW 1 cut(s) 517
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 5 cut(s) 174, 272, 313, 449, 574
Tru1I TTAA 1 cut(s) 604
Tru9I TTAA 1 cut(s) 604
TscAI CASTG 2 cut(s) 283, 537
TseFI GTSAC 1 cut(s) 135
Tsp45I GTSAC 1 cut(s) 135
TspDTI ATGAA 2 cut(s) 17, 112
TspMI CCCGGG 1 cut(s) 352
TspRI CASTG 2 cut(s) 283, 537
VneI GTGCAC 1 cut(s) 114
VpaK11BI GGWCC 3 cut(s) 27, 319, 361
XapI RAATTY 1 cut(s) 333
XcmI CCANNNNNNNNNTGG 1 cut(s) 417
XhoI CTCGAG 1 cut(s) 367
XmaI CCCGGG 1 cut(s) 352
XmiI GTMKAC 1 cut(s) 463
XmnI GAANNNNTTC 1 cut(s) 453
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.